data_1N26 # _model_server_result.job_id J0Yrhc6V4TV4ztmQYhoKbw _model_server_result.datetime_utc '2024-11-05 00:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":621}' # _entry.id 1N26 # _exptl.entry_id 1N26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N26 _cell.length_a 51.13 _cell.length_b 51.13 _cell.length_c 303.388 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -y+3/2,x+1/2,z-1/4 0 -1 0 1 0 0 0 0 1 76.695 25.565 -75.847 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NDG MAN C1 O1 . O4 HO4 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 631 NAG 2 n B NAG 2 B 2 NAG ? 632 NAG 2 n B BMA 3 B 3 BMA ? 633 MAN 2 n B MAN 4 B 4 MAN ? 635 MAN 2 n B NDG 5 B 5 NDG ? 636 NAG 3 n C NAG 1 C 1 NAG ? 611 NAG 3 n C NAG 2 C 2 NAG ? 612 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 102 A CYS 102 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 146 A CYS 146 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 A SG CYS 192 A CYS 192 1_555 H SG CYS . A CYS 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 36 A ASN 36 1_555 E C1 NAG . A NAG 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 74 A ASN 74 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 A ND2 ASN 202 A ASN 202 1_555 D C1 NAG . A NAG 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 226 A ASN 226 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale8 B O4 MAN . B MAN 4 1_555 B C1 NDG . B NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1N26 _atom_sites.fract_transf_matrix[1][1] 0.019558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 621 621 NAG NAG . E 4 NAG A 1 641 641 NAG NAG . F 5 SO4 A 1 701 701 SO4 SO4 . G 5 SO4 A 1 702 702 SO4 SO4 . H 6 CYS A 1 692 692 CYS CYS . I 7 HOH A 1 710 710 HOH TIP . I 7 HOH A 2 711 711 HOH TIP . I 7 HOH A 3 712 712 HOH TIP . I 7 HOH A 4 713 713 HOH TIP . I 7 HOH A 5 714 714 HOH TIP . I 7 HOH A 6 715 715 HOH TIP . I 7 HOH A 7 716 716 HOH TIP . I 7 HOH A 8 717 717 HOH TIP . I 7 HOH A 9 718 718 HOH TIP . I 7 HOH A 10 719 719 HOH TIP . I 7 HOH A 11 720 720 HOH TIP . I 7 HOH A 12 721 721 HOH TIP . I 7 HOH A 13 722 722 HOH TIP . I 7 HOH A 14 723 723 HOH TIP . I 7 HOH A 15 724 724 HOH TIP . I 7 HOH A 16 725 725 HOH TIP . I 7 HOH A 17 726 726 HOH TIP . I 7 HOH A 18 727 727 HOH TIP . I 7 HOH A 19 728 728 HOH TIP . I 7 HOH A 20 729 729 HOH TIP . I 7 HOH A 21 730 730 HOH TIP . I 7 HOH A 22 731 731 HOH TIP . I 7 HOH A 23 732 732 HOH TIP . I 7 HOH A 24 733 733 HOH TIP . I 7 HOH A 25 734 734 HOH TIP . I 7 HOH A 26 736 736 HOH TIP . I 7 HOH A 27 738 738 HOH TIP . I 7 HOH A 28 739 739 HOH TIP . I 7 HOH A 29 740 740 HOH TIP . I 7 HOH A 30 741 741 HOH TIP . I 7 HOH A 31 742 742 HOH TIP . I 7 HOH A 32 743 743 HOH TIP . I 7 HOH A 33 744 744 HOH TIP . I 7 HOH A 34 745 745 HOH TIP . I 7 HOH A 35 746 746 HOH TIP . I 7 HOH A 36 747 747 HOH TIP . I 7 HOH A 37 748 748 HOH TIP . I 7 HOH A 38 749 749 HOH TIP . I 7 HOH A 39 750 750 HOH TIP . I 7 HOH A 40 751 751 HOH TIP . I 7 HOH A 41 752 752 HOH TIP . I 7 HOH A 42 753 753 HOH TIP . I 7 HOH A 43 754 754 HOH TIP . I 7 HOH A 44 755 755 HOH TIP . I 7 HOH A 45 756 756 HOH TIP . I 7 HOH A 46 757 757 HOH TIP . I 7 HOH A 47 758 758 HOH TIP . I 7 HOH A 48 759 759 HOH TIP . I 7 HOH A 49 760 760 HOH TIP . I 7 HOH A 50 761 761 HOH TIP . I 7 HOH A 51 762 762 HOH TIP . I 7 HOH A 52 763 763 HOH TIP . I 7 HOH A 53 764 764 HOH TIP . I 7 HOH A 54 765 765 HOH TIP . I 7 HOH A 55 766 766 HOH TIP . I 7 HOH A 56 767 767 HOH TIP . I 7 HOH A 57 768 768 HOH TIP . I 7 HOH A 58 769 769 HOH TIP . I 7 HOH A 59 770 770 HOH TIP . I 7 HOH A 60 771 771 HOH TIP . I 7 HOH A 61 772 772 HOH TIP . I 7 HOH A 62 773 773 HOH TIP . I 7 HOH A 63 774 774 HOH TIP . I 7 HOH A 64 775 775 HOH TIP . I 7 HOH A 65 776 776 HOH TIP . I 7 HOH A 66 777 777 HOH TIP . I 7 HOH A 67 778 778 HOH TIP . I 7 HOH A 68 779 779 HOH TIP . I 7 HOH A 69 780 780 HOH TIP . I 7 HOH A 70 781 781 HOH TIP . I 7 HOH A 71 782 782 HOH TIP . I 7 HOH A 72 783 783 HOH TIP . I 7 HOH A 73 784 784 HOH TIP . I 7 HOH A 74 806 806 HOH TIP . I 7 HOH A 75 807 807 HOH TIP . I 7 HOH A 76 810 810 HOH TIP . I 7 HOH A 77 816 816 HOH TIP . I 7 HOH A 78 825 825 HOH TIP . I 7 HOH A 79 826 826 HOH TIP . I 7 HOH A 80 827 827 HOH TIP . I 7 HOH A 81 828 828 HOH TIP . I 7 HOH A 82 829 829 HOH TIP . I 7 HOH A 83 830 830 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 26.852 45.835 100.046 1 81 ? C1 NAG 621 A 1 HETATM 2 C C2 NAG . . . D 4 26.502 47.309 99.776 1 83.54 ? C2 NAG 621 A 1 HETATM 3 C C3 NAG . . . D 4 27.733 48.114 99.359 1 86.42 ? C3 NAG 621 A 1 HETATM 4 C C4 NAG . . . D 4 28.934 47.86 100.265 1 87.26 ? C4 NAG 621 A 1 HETATM 5 C C5 NAG . . . D 4 29.155 46.349 100.479 1 87.92 ? C5 NAG 621 A 1 HETATM 6 C C6 NAG . . . D 4 30.268 46.049 101.483 1 86.52 ? C6 NAG 621 A 1 HETATM 7 C C7 NAG . . . D 4 24.458 48.183 98.769 1 69.41 ? C7 NAG 621 A 1 HETATM 8 C C8 NAG . . . D 4 24.48 49.345 99.752 1 70.85 ? C8 NAG 621 A 1 HETATM 9 N N2 NAG . . . D 4 25.517 47.376 98.704 1 76.26 ? N2 NAG 621 A 1 HETATM 10 O O3 NAG . . . D 4 27.417 49.499 99.381 1 89.94 ? O3 NAG 621 A 1 HETATM 11 O O4 NAG . . . D 4 30.089 48.435 99.657 1 94.4 ? O4 NAG 621 A 1 HETATM 12 O O5 NAG . . . D 4 27.945 45.724 100.971 1 81.54 ? O5 NAG 621 A 1 HETATM 13 O O6 NAG . . . D 4 29.772 45.958 102.815 1 84.86 ? O6 NAG 621 A 1 HETATM 14 O O7 NAG . . . D 4 23.47 48.02 98.053 1 66.32 ? O7 NAG 621 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #