data_1N2K # _model_server_result.job_id r_WW19nHXk_BfHihgUsJtg _model_server_result.datetime_utc '2025-04-18 02:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1N2K # _exptl.entry_id 1N2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N2K _cell.length_a 131.52 _cell.length_b 131.52 _cell.length_c 192.17 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 156 1_555 A SG CYS 154 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 143 A CYS 161 1_555 A SG CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 282 A CYS 300 1_555 A SG CYS 396 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 470 A CYS 488 1_555 A SG CYS 482 A CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 471 A CYS 489 1_555 A SG CYS 484 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 475 A CYS 493 1_555 A SG CYS 481 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C LEU 50 A LEU 68 1_555 A N FGP 51 A FGP 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C FGP 51 A FGP 69 1_555 A N THR 52 A THR 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A ND2 ASN 140 A ASN 158 1_555 C C1 NAG . A NAG 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 166 A ASN 184 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 A OD1 ASP 11 A ASP 29 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OD1 ASP 12 A ASP 30 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 A O3P FGP 51 A FGP 69 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc4 A OG2 FGP 51 A FGP 69 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 A OD1 ASP 263 A ASP 281 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 A OD2 ASP 263 A ASP 281 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc7 A OD1 ASN 264 A ASN 282 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1N2K _atom_sites.fract_transf_matrix[1][1] 0.007603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 650 650 NAG NAG . D 4 CA A 1 600 600 CA CA . E 5 HOH A 1 801 801 HOH HOH . E 5 HOH A 2 802 802 HOH HOH . E 5 HOH A 3 803 803 HOH HOH . E 5 HOH A 4 804 804 HOH HOH . E 5 HOH A 5 805 805 HOH HOH . E 5 HOH A 6 806 806 HOH HOH . E 5 HOH A 7 807 807 HOH HOH . E 5 HOH A 8 808 808 HOH HOH . E 5 HOH A 9 809 809 HOH HOH . E 5 HOH A 10 810 810 HOH HOH . E 5 HOH A 11 811 811 HOH HOH . E 5 HOH A 12 812 812 HOH HOH . E 5 HOH A 13 813 813 HOH HOH . E 5 HOH A 14 814 814 HOH HOH . E 5 HOH A 15 815 815 HOH HOH . E 5 HOH A 16 816 816 HOH HOH . E 5 HOH A 17 817 817 HOH HOH . E 5 HOH A 18 818 818 HOH HOH . E 5 HOH A 19 819 819 HOH HOH . E 5 HOH A 20 820 820 HOH HOH . E 5 HOH A 21 821 821 HOH HOH . E 5 HOH A 22 822 822 HOH HOH . E 5 HOH A 23 823 823 HOH HOH . E 5 HOH A 24 824 824 HOH HOH . E 5 HOH A 25 825 825 HOH HOH . E 5 HOH A 26 826 826 HOH HOH . E 5 HOH A 27 827 827 HOH HOH . E 5 HOH A 28 828 828 HOH HOH . E 5 HOH A 29 829 829 HOH HOH . E 5 HOH A 30 830 830 HOH HOH . E 5 HOH A 31 831 831 HOH HOH . E 5 HOH A 32 832 832 HOH HOH . E 5 HOH A 33 833 833 HOH HOH . E 5 HOH A 34 834 834 HOH HOH . E 5 HOH A 35 835 835 HOH HOH . E 5 HOH A 36 836 836 HOH HOH . E 5 HOH A 37 837 837 HOH HOH . E 5 HOH A 38 838 838 HOH HOH . E 5 HOH A 39 839 839 HOH HOH . E 5 HOH A 40 840 840 HOH HOH . E 5 HOH A 41 841 841 HOH HOH . E 5 HOH A 42 842 842 HOH HOH . E 5 HOH A 43 843 843 HOH HOH . E 5 HOH A 44 844 844 HOH HOH . E 5 HOH A 45 845 845 HOH HOH . E 5 HOH A 46 846 846 HOH HOH . E 5 HOH A 47 847 847 HOH HOH . E 5 HOH A 48 848 848 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.982 _atom_site.Cartn_y 36.361 _atom_site.Cartn_z -18.348 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #