data_1N2L # _model_server_result.job_id KUIRieCyeJ-wfhpX_ReKxw _model_server_result.datetime_utc '2024-11-30 15:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":650}' # _entry.id 1N2L # _exptl.entry_id 1N2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N2L _cell.length_a 131.25 _cell.length_b 131.25 _cell.length_c 191.84 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 156 1_555 A SG CYS 154 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 143 A CYS 161 1_555 A SG CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 282 A CYS 300 1_555 A SG CYS 396 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 470 A CYS 488 1_555 A SG CYS 482 A CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 471 A CYS 489 1_555 A SG CYS 484 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 475 A CYS 493 1_555 A SG CYS 481 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A C LEU 50 A LEU 68 1_555 A N FGP 51 A FGP 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C FGP 51 A FGP 69 1_555 A N THR 52 A THR 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A ND2 ASN 140 A ASN 158 1_555 C C1 NAG . A NAG 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? covale ? covale4 A ND2 ASN 166 A ASN 184 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 A OD1 ASP 11 A ASP 29 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 A OD1 ASP 12 A ASP 30 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc3 A O3P FGP 51 A FGP 69 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc4 A OG2 FGP 51 A FGP 69 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 A OD1 ASP 263 A ASP 281 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc6 A OD2 ASP 263 A ASP 281 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A OD1 ASN 264 A ASN 282 1_555 D CA CA . A CA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 256 n n C1 O1 NAG sing 257 n n C1 O5 NAG sing 258 n n C1 H1 NAG sing 259 n n C2 C3 NAG sing 260 n n C2 N2 NAG sing 261 n n C2 H2 NAG sing 262 n n C3 C4 NAG sing 263 n n C3 O3 NAG sing 264 n n C3 H3 NAG sing 265 n n C4 C5 NAG sing 266 n n C4 O4 NAG sing 267 n n C4 H4 NAG sing 268 n n C5 C6 NAG sing 269 n n C5 O5 NAG sing 270 n n C5 H5 NAG sing 271 n n C6 O6 NAG sing 272 n n C6 H61 NAG sing 273 n n C6 H62 NAG sing 274 n n C7 C8 NAG sing 275 n n C7 N2 NAG sing 276 n n C7 O7 NAG doub 277 n n C8 H81 NAG sing 278 n n C8 H82 NAG sing 279 n n C8 H83 NAG sing 280 n n N2 HN2 NAG sing 281 n n O1 HO1 NAG sing 282 n n O3 HO3 NAG sing 283 n n O4 HO4 NAG sing 284 n n O6 HO6 NAG sing 285 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1N2L _atom_sites.fract_transf_matrix[1][1] 0.007619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 650 650 NAG NAG . D 4 CA A 1 600 600 CA CA . E 5 HOH A 1 801 801 HOH HOH . E 5 HOH A 2 802 802 HOH HOH . E 5 HOH A 3 804 804 HOH HOH . E 5 HOH A 4 805 805 HOH HOH . E 5 HOH A 5 806 806 HOH HOH . E 5 HOH A 6 807 807 HOH HOH . E 5 HOH A 7 808 808 HOH HOH . E 5 HOH A 8 809 809 HOH HOH . E 5 HOH A 9 810 810 HOH HOH . E 5 HOH A 10 812 812 HOH HOH . E 5 HOH A 11 813 813 HOH HOH . E 5 HOH A 12 814 814 HOH HOH . E 5 HOH A 13 816 816 HOH HOH . E 5 HOH A 14 817 817 HOH HOH . E 5 HOH A 15 818 818 HOH HOH . E 5 HOH A 16 819 819 HOH HOH . E 5 HOH A 17 820 820 HOH HOH . E 5 HOH A 18 821 821 HOH HOH . E 5 HOH A 19 822 822 HOH HOH . E 5 HOH A 20 823 823 HOH HOH . E 5 HOH A 21 824 824 HOH HOH . E 5 HOH A 22 825 825 HOH HOH . E 5 HOH A 23 826 826 HOH HOH . E 5 HOH A 24 827 827 HOH HOH . E 5 HOH A 25 828 828 HOH HOH . E 5 HOH A 26 829 829 HOH HOH . E 5 HOH A 27 830 830 HOH HOH . E 5 HOH A 28 831 831 HOH HOH . E 5 HOH A 29 832 832 HOH HOH . E 5 HOH A 30 833 833 HOH HOH . E 5 HOH A 31 834 834 HOH HOH . E 5 HOH A 32 835 835 HOH HOH . E 5 HOH A 33 836 836 HOH HOH . E 5 HOH A 34 837 837 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 30.827 20.086 -38.513 1 97.55 ? C1 NAG 650 A 1 HETATM 2 C C2 NAG . . . C 3 30.366 20.77 -39.803 1 100 ? C2 NAG 650 A 1 HETATM 3 C C3 NAG . . . C 3 29.069 21.498 -39.533 1 100 ? C3 NAG 650 A 1 HETATM 4 C C4 NAG . . . C 3 27.994 20.502 -38.989 1 100 ? C4 NAG 650 A 1 HETATM 5 C C5 NAG . . . C 3 28.535 19.667 -37.805 1 100 ? C5 NAG 650 A 1 HETATM 6 C C6 NAG . . . C 3 27.639 18.447 -37.424 1 100 ? C6 NAG 650 A 1 HETATM 7 C C7 NAG . . . C 3 32.553 21.343 -40.679 1 100 ? C7 NAG 650 A 1 HETATM 8 C C8 NAG . . . C 3 33.456 22.495 -41.048 1 100 ? C8 NAG 650 A 1 HETATM 9 N N2 NAG . . . C 3 31.373 21.75 -40.221 1 100 ? N2 NAG 650 A 1 HETATM 10 O O3 NAG . . . C 3 28.642 22.116 -40.768 1 100 ? O3 NAG 650 A 1 HETATM 11 O O4 NAG . . . C 3 26.85 21.221 -38.511 1 100 ? O4 NAG 650 A 1 HETATM 12 O O5 NAG . . . C 3 29.856 19.148 -38.11 1 100 ? O5 NAG 650 A 1 HETATM 13 O O6 NAG . . . C 3 28.216 17.726 -36.32 1 100 ? O6 NAG 650 A 1 HETATM 14 O O7 NAG . . . C 3 32.897 20.168 -40.792 1 100 ? O7 NAG 650 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #