data_1N39 # _model_server_result.job_id LR8IsY7eWxDofdrHtRElkw _model_server_result.datetime_utc '2024-11-21 17:59:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1N39 # _exptl.entry_id 1N39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N39 _cell.length_a 92.366 _cell.length_b 92.366 _cell.length_c 211.277 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 C DA 22 1_555 B P 3DR 8 C 3DR 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale2 B O3' 3DR 8 C 3DR 23 1_555 B P DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 D CA CA . C CA 1001 1_555 G O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? hydrog 'DG-DC PAIR' hydrog1 A N1 DG 2 B DG 2 1_555 B O2 DC 14 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DT 3 B DT 3 1_555 B N1 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O4 DT 3 B DT 3 1_555 B N6 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 4 B DA 4 1_555 B N3 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 4 B DA 4 1_555 B O4 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 5 B DG 5 1_555 B N3 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 5 B DG 5 1_555 B O2 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 5 B DG 5 1_555 B N4 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 6 B DA 6 1_555 B N3 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 6 B DA 6 1_555 B O4 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 7 B DC 7 1_555 B N1 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 7 B DC 7 1_555 B O6 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 7 B DC 7 1_555 B N2 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 9 B DT 9 1_555 B N1 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 9 B DT 9 1_555 B N6 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 10 B DG 10 1_555 B N3 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 10 B DG 10 1_555 B O2 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 10 B DG 10 1_555 B N4 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 11 B DG 11 1_555 B N3 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 11 B DG 11 1_555 B O2 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 11 B DG 11 1_555 B N4 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 12 B DA 12 1_555 B N3 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 12 B DA 12 1_555 B O4 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DC 13 B DC 13 1_555 B N1 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 DC 13 B DC 13 1_555 B O6 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 DC 13 B DC 13 1_555 B N2 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 14 B DG 14 1_555 B N3 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 14 B DG 14 1_555 B O2 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 14 B DG 14 1_555 B N4 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1N39 _atom_sites.fract_transf_matrix[1][1] 0.010826 _atom_sites.fract_transf_matrix[1][2] 0.006251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA C 1 1001 1001 CA CA . E 5 HOH B 1 23 23 HOH HOH . E 5 HOH B 2 41 41 HOH HOH . E 5 HOH B 3 115 115 HOH HOH . E 5 HOH B 4 120 120 HOH HOH . E 5 HOH B 5 135 135 HOH HOH . F 5 HOH C 1 1002 16 HOH HOH . F 5 HOH C 2 1003 92 HOH HOH . F 5 HOH C 3 1004 100 HOH HOH . F 5 HOH C 4 1005 136 HOH HOH . F 5 HOH C 5 1006 163 HOH HOH . G 5 HOH A 1 326 2 HOH HOH . G 5 HOH A 2 327 5 HOH HOH . G 5 HOH A 3 328 6 HOH HOH . G 5 HOH A 4 329 9 HOH HOH . G 5 HOH A 5 330 10 HOH HOH . G 5 HOH A 6 331 11 HOH HOH . G 5 HOH A 7 332 12 HOH HOH . G 5 HOH A 8 333 13 HOH HOH . G 5 HOH A 9 334 14 HOH HOH . G 5 HOH A 10 335 17 HOH HOH . G 5 HOH A 11 336 19 HOH HOH . G 5 HOH A 12 337 21 HOH HOH . G 5 HOH A 13 338 22 HOH HOH . G 5 HOH A 14 339 25 HOH HOH . G 5 HOH A 15 340 26 HOH HOH . G 5 HOH A 16 341 28 HOH HOH . G 5 HOH A 17 342 29 HOH HOH . G 5 HOH A 18 343 30 HOH HOH . G 5 HOH A 19 344 31 HOH HOH . G 5 HOH A 20 345 32 HOH HOH . G 5 HOH A 21 346 33 HOH HOH . G 5 HOH A 22 347 36 HOH HOH . G 5 HOH A 23 348 37 HOH HOH . G 5 HOH A 24 349 40 HOH HOH . G 5 HOH A 25 350 43 HOH HOH . G 5 HOH A 26 351 44 HOH HOH . G 5 HOH A 27 352 45 HOH HOH . G 5 HOH A 28 353 46 HOH HOH . G 5 HOH A 29 354 48 HOH HOH . G 5 HOH A 30 355 49 HOH HOH . G 5 HOH A 31 356 53 HOH HOH . G 5 HOH A 32 357 54 HOH HOH . G 5 HOH A 33 358 55 HOH HOH . G 5 HOH A 34 359 56 HOH HOH . G 5 HOH A 35 360 57 HOH HOH . G 5 HOH A 36 361 58 HOH HOH . G 5 HOH A 37 362 59 HOH HOH . G 5 HOH A 38 363 60 HOH HOH . G 5 HOH A 39 364 64 HOH HOH . G 5 HOH A 40 365 65 HOH HOH . G 5 HOH A 41 366 66 HOH HOH . G 5 HOH A 42 367 68 HOH HOH . G 5 HOH A 43 368 69 HOH HOH . G 5 HOH A 44 369 71 HOH HOH . G 5 HOH A 45 370 72 HOH HOH . G 5 HOH A 46 371 73 HOH HOH . G 5 HOH A 47 372 74 HOH HOH . G 5 HOH A 48 373 75 HOH HOH . G 5 HOH A 49 374 76 HOH HOH . G 5 HOH A 50 375 77 HOH HOH . G 5 HOH A 51 376 78 HOH HOH . G 5 HOH A 52 377 79 HOH HOH . G 5 HOH A 53 378 80 HOH HOH . G 5 HOH A 54 379 81 HOH HOH . G 5 HOH A 55 380 83 HOH HOH . G 5 HOH A 56 381 84 HOH HOH . G 5 HOH A 57 382 85 HOH HOH . G 5 HOH A 58 383 86 HOH HOH . G 5 HOH A 59 384 87 HOH HOH . G 5 HOH A 60 385 88 HOH HOH . G 5 HOH A 61 386 89 HOH HOH . G 5 HOH A 62 387 90 HOH HOH . G 5 HOH A 63 388 91 HOH HOH . G 5 HOH A 64 389 93 HOH HOH . G 5 HOH A 65 390 94 HOH HOH . G 5 HOH A 66 391 95 HOH HOH . G 5 HOH A 67 392 96 HOH HOH . G 5 HOH A 68 393 97 HOH HOH . G 5 HOH A 69 394 98 HOH HOH . G 5 HOH A 70 395 101 HOH HOH . G 5 HOH A 71 396 102 HOH HOH . G 5 HOH A 72 397 103 HOH HOH . G 5 HOH A 73 398 104 HOH HOH . G 5 HOH A 74 399 105 HOH HOH . G 5 HOH A 75 400 109 HOH HOH . G 5 HOH A 76 401 110 HOH HOH . G 5 HOH A 77 402 111 HOH HOH . G 5 HOH A 78 403 112 HOH HOH . G 5 HOH A 79 404 113 HOH HOH . G 5 HOH A 80 405 114 HOH HOH . G 5 HOH A 81 406 117 HOH HOH . G 5 HOH A 82 407 118 HOH HOH . G 5 HOH A 83 408 119 HOH HOH . G 5 HOH A 84 409 121 HOH HOH . G 5 HOH A 85 410 123 HOH HOH . G 5 HOH A 86 411 124 HOH HOH . G 5 HOH A 87 412 125 HOH HOH . G 5 HOH A 88 413 126 HOH HOH . G 5 HOH A 89 414 127 HOH HOH . G 5 HOH A 90 415 128 HOH HOH . G 5 HOH A 91 416 129 HOH HOH . G 5 HOH A 92 417 130 HOH HOH . G 5 HOH A 93 418 131 HOH HOH . G 5 HOH A 94 419 132 HOH HOH . G 5 HOH A 95 420 137 HOH HOH . G 5 HOH A 96 421 138 HOH HOH . G 5 HOH A 97 422 139 HOH HOH . G 5 HOH A 98 423 140 HOH HOH . G 5 HOH A 99 424 141 HOH HOH . G 5 HOH A 100 425 143 HOH HOH . G 5 HOH A 101 426 144 HOH HOH . G 5 HOH A 102 427 145 HOH HOH . G 5 HOH A 103 428 146 HOH HOH . G 5 HOH A 104 429 147 HOH HOH . G 5 HOH A 105 430 149 HOH HOH . G 5 HOH A 106 431 150 HOH HOH . G 5 HOH A 107 432 151 HOH HOH . G 5 HOH A 108 433 152 HOH HOH . G 5 HOH A 109 434 153 HOH HOH . G 5 HOH A 110 435 154 HOH HOH . G 5 HOH A 111 436 155 HOH HOH . G 5 HOH A 112 437 156 HOH HOH . G 5 HOH A 113 438 157 HOH HOH . G 5 HOH A 114 439 158 HOH HOH . G 5 HOH A 115 440 159 HOH HOH . G 5 HOH A 116 441 161 HOH HOH . G 5 HOH A 117 442 162 HOH HOH . G 5 HOH A 118 443 164 HOH HOH . G 5 HOH A 119 444 165 HOH HOH . G 5 HOH A 120 445 166 HOH HOH . G 5 HOH A 121 446 167 HOH HOH . G 5 HOH A 122 447 168 HOH HOH . G 5 HOH A 123 448 169 HOH HOH . G 5 HOH A 124 449 170 HOH HOH . G 5 HOH A 125 450 171 HOH HOH . G 5 HOH A 126 451 172 HOH HOH . G 5 HOH A 127 452 173 HOH HOH . G 5 HOH A 128 453 174 HOH HOH . G 5 HOH A 129 454 175 HOH HOH . G 5 HOH A 130 455 176 HOH HOH . G 5 HOH A 131 456 178 HOH HOH . G 5 HOH A 132 457 179 HOH HOH . G 5 HOH A 133 458 180 HOH HOH . G 5 HOH A 134 459 181 HOH HOH . G 5 HOH A 135 460 182 HOH HOH . G 5 HOH A 136 461 183 HOH HOH . G 5 HOH A 137 462 185 HOH HOH . G 5 HOH A 138 463 186 HOH HOH . G 5 HOH A 139 464 187 HOH HOH . G 5 HOH A 140 465 188 HOH HOH . G 5 HOH A 141 466 189 HOH HOH . G 5 HOH A 142 467 190 HOH HOH . G 5 HOH A 143 468 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.689 _atom_site.Cartn_y 32.164 _atom_site.Cartn_z 40.269 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #