data_1N3C # _model_server_result.job_id iwbbcpFBYeDcI7IvQfjfVQ _model_server_result.datetime_utc '2024-10-19 03:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1N3C # _exptl.entry_id 1N3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N3C _cell.length_a 92.255 _cell.length_b 92.255 _cell.length_c 210.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 C DA 22 1_555 B P 8OG 8 C 8OG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale2 B O3' 8OG 8 C 8OG 23 1_555 B P DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc1 D CA CA . C CA 1001 1_555 F O HOH . C HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 D CA CA . C CA 1001 1_555 G O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 B DG 2 1_555 B N3 DC 14 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 B DG 2 1_555 B O2 DC 14 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 B DG 2 1_555 B N4 DC 14 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 B DT 3 1_555 B N1 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 B DT 3 1_555 B N6 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 B DA 4 1_555 B N3 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 B DA 4 1_555 B O4 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 5 B DG 5 1_555 B N3 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 5 B DG 5 1_555 B O2 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 5 B DG 5 1_555 B N4 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 6 B DA 6 1_555 B N3 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 6 B DA 6 1_555 B O4 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 7 B DC 7 1_555 B N1 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 7 B DC 7 1_555 B O6 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 7 B DC 7 1_555 B N2 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 9 B DT 9 1_555 B N1 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 9 B DT 9 1_555 B N6 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 B DG 10 1_555 B N3 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 B DG 10 1_555 B O2 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 B DG 10 1_555 B N4 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog21 A N2 DG 11 B DG 11 1_555 B O2 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 12 B DA 12 1_555 B N3 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 12 B DA 12 1_555 B O4 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog24 A N4 DC 13 B DC 13 1_555 B O6 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 14 B DG 14 1_555 B N3 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 14 B DG 14 1_555 B O2 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 14 B DG 14 1_555 B N4 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog28 A O2 DC 15 B DC 15 1_555 B N2 DG 1 C DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1N3C _atom_sites.fract_transf_matrix[1][1] 0.01084 _atom_sites.fract_transf_matrix[1][2] 0.006258 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA C 1 1001 1 CA CA . E 5 HOH B 1 173 173 HOH HOH . E 5 HOH B 2 183 183 HOH HOH . E 5 HOH B 3 188 188 HOH HOH . E 5 HOH B 4 190 190 HOH HOH . E 5 HOH B 5 192 192 HOH HOH . E 5 HOH B 6 198 198 HOH HOH . E 5 HOH B 7 206 206 HOH HOH . E 5 HOH B 8 207 207 HOH HOH . E 5 HOH B 9 213 213 HOH HOH . F 5 HOH C 1 1002 1 HOH HOH . F 5 HOH C 2 1003 16 HOH HOH . F 5 HOH C 3 1004 89 HOH HOH . F 5 HOH C 4 1005 155 HOH HOH . F 5 HOH C 5 1006 181 HOH HOH . F 5 HOH C 6 1007 187 HOH HOH . F 5 HOH C 7 1008 205 HOH HOH . G 5 HOH A 1 326 2 HOH HOH . G 5 HOH A 2 327 4 HOH HOH . G 5 HOH A 3 328 5 HOH HOH . G 5 HOH A 4 329 6 HOH HOH . G 5 HOH A 5 330 9 HOH HOH . G 5 HOH A 6 331 12 HOH HOH . G 5 HOH A 7 332 13 HOH HOH . G 5 HOH A 8 333 15 HOH HOH . G 5 HOH A 9 334 17 HOH HOH . G 5 HOH A 10 335 18 HOH HOH . G 5 HOH A 11 336 19 HOH HOH . G 5 HOH A 12 337 21 HOH HOH . G 5 HOH A 13 338 24 HOH HOH . G 5 HOH A 14 339 25 HOH HOH . G 5 HOH A 15 340 26 HOH HOH . G 5 HOH A 16 341 28 HOH HOH . G 5 HOH A 17 342 30 HOH HOH . G 5 HOH A 18 343 31 HOH HOH . G 5 HOH A 19 344 32 HOH HOH . G 5 HOH A 20 345 33 HOH HOH . G 5 HOH A 21 346 36 HOH HOH . G 5 HOH A 22 347 37 HOH HOH . G 5 HOH A 23 348 39 HOH HOH . G 5 HOH A 24 349 40 HOH HOH . G 5 HOH A 25 350 43 HOH HOH . G 5 HOH A 26 351 44 HOH HOH . G 5 HOH A 27 352 45 HOH HOH . G 5 HOH A 28 353 46 HOH HOH . G 5 HOH A 29 354 47 HOH HOH . G 5 HOH A 30 355 48 HOH HOH . G 5 HOH A 31 356 49 HOH HOH . G 5 HOH A 32 357 50 HOH HOH . G 5 HOH A 33 358 53 HOH HOH . G 5 HOH A 34 359 54 HOH HOH . G 5 HOH A 35 360 55 HOH HOH . G 5 HOH A 36 361 56 HOH HOH . G 5 HOH A 37 362 57 HOH HOH . G 5 HOH A 38 363 58 HOH HOH . G 5 HOH A 39 364 59 HOH HOH . G 5 HOH A 40 365 64 HOH HOH . G 5 HOH A 41 366 65 HOH HOH . G 5 HOH A 42 367 66 HOH HOH . G 5 HOH A 43 368 68 HOH HOH . G 5 HOH A 44 369 71 HOH HOH . G 5 HOH A 45 370 72 HOH HOH . G 5 HOH A 46 371 73 HOH HOH . G 5 HOH A 47 372 74 HOH HOH . G 5 HOH A 48 373 76 HOH HOH . G 5 HOH A 49 374 77 HOH HOH . G 5 HOH A 50 375 78 HOH HOH . G 5 HOH A 51 376 79 HOH HOH . G 5 HOH A 52 377 80 HOH HOH . G 5 HOH A 53 378 81 HOH HOH . G 5 HOH A 54 379 83 HOH HOH . G 5 HOH A 55 380 84 HOH HOH . G 5 HOH A 56 381 85 HOH HOH . G 5 HOH A 57 382 87 HOH HOH . G 5 HOH A 58 383 90 HOH HOH . G 5 HOH A 59 384 91 HOH HOH . G 5 HOH A 60 385 92 HOH HOH . G 5 HOH A 61 386 95 HOH HOH . G 5 HOH A 62 387 96 HOH HOH . G 5 HOH A 63 388 97 HOH HOH . G 5 HOH A 64 389 98 HOH HOH . G 5 HOH A 65 390 101 HOH HOH . G 5 HOH A 66 391 102 HOH HOH . G 5 HOH A 67 392 103 HOH HOH . G 5 HOH A 68 393 104 HOH HOH . G 5 HOH A 69 394 109 HOH HOH . G 5 HOH A 70 395 112 HOH HOH . G 5 HOH A 71 396 113 HOH HOH . G 5 HOH A 72 397 116 HOH HOH . G 5 HOH A 73 398 117 HOH HOH . G 5 HOH A 74 399 118 HOH HOH . G 5 HOH A 75 400 119 HOH HOH . G 5 HOH A 76 401 121 HOH HOH . G 5 HOH A 77 402 124 HOH HOH . G 5 HOH A 78 403 126 HOH HOH . G 5 HOH A 79 404 127 HOH HOH . G 5 HOH A 80 405 128 HOH HOH . G 5 HOH A 81 406 129 HOH HOH . G 5 HOH A 82 407 130 HOH HOH . G 5 HOH A 83 408 132 HOH HOH . G 5 HOH A 84 409 137 HOH HOH . G 5 HOH A 85 410 138 HOH HOH . G 5 HOH A 86 411 139 HOH HOH . G 5 HOH A 87 412 140 HOH HOH . G 5 HOH A 88 413 141 HOH HOH . G 5 HOH A 89 414 142 HOH HOH . G 5 HOH A 90 415 143 HOH HOH . G 5 HOH A 91 416 145 HOH HOH . G 5 HOH A 92 417 146 HOH HOH . G 5 HOH A 93 418 149 HOH HOH . G 5 HOH A 94 419 150 HOH HOH . G 5 HOH A 95 420 152 HOH HOH . G 5 HOH A 96 421 153 HOH HOH . G 5 HOH A 97 422 154 HOH HOH . G 5 HOH A 98 423 156 HOH HOH . G 5 HOH A 99 424 157 HOH HOH . G 5 HOH A 100 425 158 HOH HOH . G 5 HOH A 101 426 159 HOH HOH . G 5 HOH A 102 427 160 HOH HOH . G 5 HOH A 103 428 161 HOH HOH . G 5 HOH A 104 429 162 HOH HOH . G 5 HOH A 105 430 163 HOH HOH . G 5 HOH A 106 431 164 HOH HOH . G 5 HOH A 107 432 165 HOH HOH . G 5 HOH A 108 433 166 HOH HOH . G 5 HOH A 109 434 167 HOH HOH . G 5 HOH A 110 435 168 HOH HOH . G 5 HOH A 111 436 169 HOH HOH . G 5 HOH A 112 437 170 HOH HOH . G 5 HOH A 113 438 171 HOH HOH . G 5 HOH A 114 439 172 HOH HOH . G 5 HOH A 115 440 174 HOH HOH . G 5 HOH A 116 441 175 HOH HOH . G 5 HOH A 117 442 176 HOH HOH . G 5 HOH A 118 443 177 HOH HOH . G 5 HOH A 119 444 178 HOH HOH . G 5 HOH A 120 445 179 HOH HOH . G 5 HOH A 121 446 180 HOH HOH . G 5 HOH A 122 447 182 HOH HOH . G 5 HOH A 123 448 184 HOH HOH . G 5 HOH A 124 449 185 HOH HOH . G 5 HOH A 125 450 186 HOH HOH . G 5 HOH A 126 451 189 HOH HOH . G 5 HOH A 127 452 191 HOH HOH . G 5 HOH A 128 453 193 HOH HOH . G 5 HOH A 129 454 194 HOH HOH . G 5 HOH A 130 455 195 HOH HOH . G 5 HOH A 131 456 196 HOH HOH . G 5 HOH A 132 457 197 HOH HOH . G 5 HOH A 133 458 199 HOH HOH . G 5 HOH A 134 459 200 HOH HOH . G 5 HOH A 135 460 201 HOH HOH . G 5 HOH A 136 461 202 HOH HOH . G 5 HOH A 137 462 203 HOH HOH . G 5 HOH A 138 463 204 HOH HOH . G 5 HOH A 139 464 208 HOH HOH . G 5 HOH A 140 465 209 HOH HOH . G 5 HOH A 141 466 210 HOH HOH . G 5 HOH A 142 467 211 HOH HOH . G 5 HOH A 143 468 212 HOH HOH . G 5 HOH A 144 469 214 HOH HOH . G 5 HOH A 145 470 215 HOH HOH . G 5 HOH A 146 471 216 HOH HOH . G 5 HOH A 147 472 217 HOH HOH . G 5 HOH A 148 473 218 HOH HOH . G 5 HOH A 149 474 219 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.653 _atom_site.Cartn_y 32.244 _atom_site.Cartn_z 41.623 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 123.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #