data_1N3R # _model_server_result.job_id NADU0pJwLWGuPV_In84X9Q _model_server_result.datetime_utc '2025-03-05 21:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":1424}' # _entry.id 1N3R # _exptl.entry_id 1N3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N3R _cell.length_a 224.466 _cell.length_b 313.258 _cell.length_c 130.181 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 PISA pentameric 5 author_and_software_defined_assembly 3 PISA decameric 10 software_defined_assembly 4 PISA decameric 10 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,P,Q,R,S,T,EA,FA,GA,HA,IA 1 1 F,G,H,I,J,U,V,W,X,Y,JA,KA,LA,MA,NA 2 1 K,L,M,N,O,Z,AA,BA,CA,DA,OA,PA,QA,RA,SA 3 1 A,B,C,D,E,P,Q,R,S,T,EA,FA,GA,HA,IA 4 1 F,G,H,I,J,U,V,W,X,Y,JA,KA,LA,MA,NA 4 2 K,L,M,N,O,Z,AA,BA,CA,DA,OA,PA,QA,RA,SA 5 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 112.233 156.629 0 3 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1N3R _atom_sites.fract_transf_matrix[1][1] 0.004455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 2 GTP A 1 1415 411 GTP GTP . Q 2 GTP B 1 1411 411 GTP GTP . R 2 GTP C 1 1412 411 GTP GTP . S 2 GTP D 1 1413 411 GTP GTP . T 2 GTP E 1 1414 411 GTP GTP . U 2 GTP F 1 1420 411 GTP GTP . V 2 GTP G 1 1416 411 GTP GTP . W 2 GTP H 1 1417 411 GTP GTP . X 2 GTP I 1 1418 411 GTP GTP . Y 2 GTP J 1 1419 411 GTP GTP . Z 2 GTP K 1 1425 411 GTP GTP . AA 2 GTP L 1 1421 411 GTP GTP . BA 2 GTP M 1 1422 411 GTP GTP . CA 2 GTP N 1 1423 411 GTP GTP . DA 2 GTP O 1 1424 411 GTP GTP . EA 3 HOH A 1 1416 62 HOH HOH . EA 3 HOH A 2 1417 76 HOH HOH . FA 3 HOH B 1 1412 18 HOH HOH . FA 3 HOH B 2 1413 33 HOH HOH . FA 3 HOH B 3 1414 57 HOH HOH . FA 3 HOH B 4 1415 67 HOH HOH . GA 3 HOH C 1 1413 46 HOH HOH . GA 3 HOH C 2 1414 60 HOH HOH . GA 3 HOH C 3 1415 65 HOH HOH . GA 3 HOH C 4 1416 78 HOH HOH . HA 3 HOH D 1 1414 4 HOH HOH . HA 3 HOH D 2 1415 9 HOH HOH . HA 3 HOH D 3 1416 10 HOH HOH . HA 3 HOH D 4 1417 30 HOH HOH . HA 3 HOH D 5 1418 43 HOH HOH . HA 3 HOH D 6 1419 56 HOH HOH . HA 3 HOH D 7 1420 63 HOH HOH . IA 3 HOH E 1 1415 52 HOH HOH . IA 3 HOH E 2 1416 71 HOH HOH . JA 3 HOH F 1 1421 2 HOH HOH . JA 3 HOH F 2 1422 5 HOH HOH . JA 3 HOH F 3 1423 6 HOH HOH . JA 3 HOH F 4 1424 7 HOH HOH . JA 3 HOH F 5 1425 14 HOH HOH . JA 3 HOH F 6 1426 50 HOH HOH . KA 3 HOH G 1 1417 11 HOH HOH . KA 3 HOH G 2 1418 12 HOH HOH . KA 3 HOH G 3 1419 13 HOH HOH . KA 3 HOH G 4 1420 15 HOH HOH . KA 3 HOH G 5 1421 25 HOH HOH . LA 3 HOH H 1 1418 16 HOH HOH . LA 3 HOH H 2 1419 17 HOH HOH . LA 3 HOH H 3 1420 19 HOH HOH . LA 3 HOH H 4 1421 20 HOH HOH . LA 3 HOH H 5 1422 21 HOH HOH . LA 3 HOH H 6 1423 22 HOH HOH . MA 3 HOH I 1 1419 24 HOH HOH . MA 3 HOH I 2 1420 26 HOH HOH . MA 3 HOH I 3 1421 27 HOH HOH . MA 3 HOH I 4 1422 66 HOH HOH . NA 3 HOH J 1 1420 28 HOH HOH . NA 3 HOH J 2 1421 79 HOH HOH . OA 3 HOH K 1 1426 1 HOH HOH . OA 3 HOH K 2 1427 8 HOH HOH . OA 3 HOH K 3 1428 48 HOH HOH . OA 3 HOH K 4 1429 53 HOH HOH . OA 3 HOH K 5 1430 54 HOH HOH . OA 3 HOH K 6 1431 58 HOH HOH . OA 3 HOH K 7 1432 73 HOH HOH . PA 3 HOH L 1 1422 23 HOH HOH . PA 3 HOH L 2 1423 37 HOH HOH . PA 3 HOH L 3 1424 40 HOH HOH . PA 3 HOH L 4 1425 55 HOH HOH . PA 3 HOH L 5 1426 64 HOH HOH . QA 3 HOH M 1 1423 29 HOH HOH . QA 3 HOH M 2 1424 31 HOH HOH . QA 3 HOH M 3 1425 32 HOH HOH . QA 3 HOH M 4 1426 34 HOH HOH . QA 3 HOH M 5 1427 35 HOH HOH . QA 3 HOH M 6 1428 38 HOH HOH . QA 3 HOH M 7 1429 41 HOH HOH . QA 3 HOH M 8 1430 49 HOH HOH . QA 3 HOH M 9 1431 61 HOH HOH . QA 3 HOH M 10 1432 68 HOH HOH . QA 3 HOH M 11 1433 69 HOH HOH . QA 3 HOH M 12 1434 70 HOH HOH . QA 3 HOH M 13 1435 74 HOH HOH . RA 3 HOH N 1 1424 3 HOH HOH . RA 3 HOH N 2 1425 36 HOH HOH . RA 3 HOH N 3 1426 39 HOH HOH . RA 3 HOH N 4 1427 42 HOH HOH . RA 3 HOH N 5 1428 44 HOH HOH . RA 3 HOH N 6 1429 45 HOH HOH . RA 3 HOH N 7 1430 47 HOH HOH . RA 3 HOH N 8 1431 75 HOH HOH . RA 3 HOH N 9 1432 77 HOH HOH . SA 3 HOH O 1 1425 51 HOH HOH . SA 3 HOH O 2 1426 59 HOH HOH . SA 3 HOH O 3 1427 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . DA 2 75.279 26.233 2.702 1 49.76 ? PG GTP 1424 O 1 HETATM 2 O O1G GTP . . . DA 2 76.179 26.276 1.475 1 48.26 ? O1G GTP 1424 O 1 HETATM 3 O O2G GTP . . . DA 2 75.923 25.764 3.983 1 47.52 ? O2G GTP 1424 O 1 HETATM 4 O O3G GTP . . . DA 2 74.092 25.485 2.357 1 53.98 ? O3G GTP 1424 O 1 HETATM 5 O O3B GTP . . . DA 2 74.789 27.794 2.884 1 58.41 ? O3B GTP 1424 O 1 HETATM 6 P PB GTP . . . DA 2 75.628 29.219 2.696 1 65.64 ? PB GTP 1424 O 1 HETATM 7 O O1B GTP . . . DA 2 76.975 28.9 2.018 1 66.96 ? O1B GTP 1424 O 1 HETATM 8 O O2B GTP . . . DA 2 74.794 30.181 1.951 1 62.58 ? O2B GTP 1424 O 1 HETATM 9 O O3A GTP . . . DA 2 75.808 29.619 4.198 1 64.93 ? O3A GTP 1424 O 1 HETATM 10 P PA GTP . . . DA 2 75.265 30.856 5.038 1 67.66 ? PA GTP 1424 O 1 HETATM 11 O O1A GTP . . . DA 2 76.192 31.185 6.099 1 69.47 ? O1A GTP 1424 O 1 HETATM 12 O O2A GTP . . . DA 2 74.977 31.95 4.013 1 66.75 ? O2A GTP 1424 O 1 HETATM 13 O O5' GTP . . . DA 2 73.882 30.278 5.803 1 67.85 ? O5' GTP 1424 O 1 HETATM 14 C C5' GTP . . . DA 2 72.749 29.876 4.904 0.75 66.61 ? C5' GTP 1424 O 1 HETATM 15 C C4' GTP . . . DA 2 72.172 28.797 5.947 0.75 65.89 ? C4' GTP 1424 O 1 HETATM 16 O O4' GTP . . . DA 2 70.792 28.956 6.44 0.75 65.98 ? O4' GTP 1424 O 1 HETATM 17 C C3' GTP . . . DA 2 72.245 27.385 5.56 0.75 65.05 ? C3' GTP 1424 O 1 HETATM 18 O O3' GTP . . . DA 2 72.771 26.577 6.597 1 62.67 ? O3' GTP 1424 O 1 HETATM 19 C C2' GTP . . . DA 2 70.809 26.968 5.1 0.75 64.54 ? C2' GTP 1424 O 1 HETATM 20 O O2' GTP . . . DA 2 70.614 25.665 5.002 0.75 64.23 ? O2' GTP 1424 O 1 HETATM 21 C C1' GTP . . . DA 2 70.102 27.697 6.42 0.75 64.54 ? C1' GTP 1424 O 1 HETATM 22 N N9 GTP . . . DA 2 68.597 27.859 6.235 0.75 64.7 ? N9 GTP 1424 O 1 HETATM 23 C C8 GTP . . . DA 2 67.949 28.081 5.015 0.75 64.34 ? C8 GTP 1424 O 1 HETATM 24 N N7 GTP . . . DA 2 66.67 28.121 5.472 0.75 63.72 ? N7 GTP 1424 O 1 HETATM 25 C C5 GTP . . . DA 2 66.51 27.938 6.851 0.75 62.66 ? C5 GTP 1424 O 1 HETATM 26 C C6 GTP . . . DA 2 65.434 27.922 7.554 0.75 63.03 ? C6 GTP 1424 O 1 HETATM 27 O O6 GTP . . . DA 2 64.178 28.039 7.404 0.75 62.04 ? O6 GTP 1424 O 1 HETATM 28 N N1 GTP . . . DA 2 65.743 27.685 9.052 0.75 62.16 ? N1 GTP 1424 O 1 HETATM 29 C C2 GTP . . . DA 2 67.008 27.544 9.341 0.75 61.98 ? C2 GTP 1424 O 1 HETATM 30 N N2 GTP . . . DA 2 67.306 27.308 10.795 1 60.63 ? N2 GTP 1424 O 1 HETATM 31 N N3 GTP . . . DA 2 68.127 27.562 8.599 0.75 61.93 ? N3 GTP 1424 O 1 HETATM 32 C C4 GTP . . . DA 2 67.749 27.778 7.3 0.75 63.11 ? C4 GTP 1424 O 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #