data_1N3U # _model_server_result.job_id EELMv4ZEZzWl6pu5JK_LTA _model_server_result.datetime_utc '2025-02-18 15:09:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 1N3U # _exptl.entry_id 1N3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.2 _cell.angle_gamma 90 _cell.entry_id 1N3U _cell.length_a 54.395 _cell.length_b 55.92 _cell.length_c 79.379 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 D FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 D FE HEM . A HEM 300 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc3 B NE2 HIS 25 B HIS 25 1_555 G FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 G FE HEM . B HEM 300 1_555 I O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1N3U _atom_sites.fract_transf_matrix[1][1] 0.018384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 234 100 CL CL . D 3 HEM A 1 300 300 HEM HEM . E 2 CL B 1 234 101 CL CL . F 2 CL B 1 235 102 CL CL . G 3 HEM B 1 300 300 HEM HEM . H 4 HOH A 1 301 1 HOH HOH . H 4 HOH A 2 302 5 HOH HOH . H 4 HOH A 3 303 6 HOH HOH . H 4 HOH A 4 304 7 HOH HOH . H 4 HOH A 5 305 9 HOH HOH . H 4 HOH A 6 306 10 HOH HOH . H 4 HOH A 7 307 11 HOH HOH . H 4 HOH A 8 308 13 HOH HOH . H 4 HOH A 9 309 15 HOH HOH . H 4 HOH A 10 310 16 HOH HOH . H 4 HOH A 11 311 17 HOH HOH . H 4 HOH A 12 312 31 HOH HOH . H 4 HOH A 13 313 32 HOH HOH . H 4 HOH A 14 314 33 HOH HOH . H 4 HOH A 15 315 37 HOH HOH . H 4 HOH A 16 316 43 HOH HOH . H 4 HOH A 17 317 45 HOH HOH . H 4 HOH A 18 318 48 HOH HOH . H 4 HOH A 19 319 49 HOH HOH . H 4 HOH A 20 320 50 HOH HOH . H 4 HOH A 21 321 51 HOH HOH . H 4 HOH A 22 322 52 HOH HOH . H 4 HOH A 23 323 53 HOH HOH . H 4 HOH A 24 324 54 HOH HOH . H 4 HOH A 25 325 55 HOH HOH . H 4 HOH A 26 326 56 HOH HOH . H 4 HOH A 27 327 69 HOH HOH . H 4 HOH A 28 328 70 HOH HOH . H 4 HOH A 29 329 73 HOH HOH . H 4 HOH A 30 330 78 HOH HOH . H 4 HOH A 31 331 79 HOH HOH . H 4 HOH A 32 332 81 HOH HOH . H 4 HOH A 33 333 84 HOH HOH . H 4 HOH A 34 334 85 HOH HOH . H 4 HOH A 35 335 86 HOH HOH . I 4 HOH B 1 301 2 HOH HOH . I 4 HOH B 2 302 4 HOH HOH . I 4 HOH B 3 303 8 HOH HOH . I 4 HOH B 4 304 12 HOH HOH . I 4 HOH B 5 305 14 HOH HOH . I 4 HOH B 6 306 18 HOH HOH . I 4 HOH B 7 307 19 HOH HOH . I 4 HOH B 8 308 20 HOH HOH . I 4 HOH B 9 309 21 HOH HOH . I 4 HOH B 10 310 22 HOH HOH . I 4 HOH B 11 311 23 HOH HOH . I 4 HOH B 12 312 24 HOH HOH . I 4 HOH B 13 313 25 HOH HOH . I 4 HOH B 14 314 26 HOH HOH . I 4 HOH B 15 315 27 HOH HOH . I 4 HOH B 16 316 28 HOH HOH . I 4 HOH B 17 317 29 HOH HOH . I 4 HOH B 18 318 30 HOH HOH . I 4 HOH B 19 319 34 HOH HOH . I 4 HOH B 20 320 35 HOH HOH . I 4 HOH B 21 321 36 HOH HOH . I 4 HOH B 22 322 38 HOH HOH . I 4 HOH B 23 323 39 HOH HOH . I 4 HOH B 24 324 40 HOH HOH . I 4 HOH B 25 325 41 HOH HOH . I 4 HOH B 26 326 42 HOH HOH . I 4 HOH B 27 327 44 HOH HOH . I 4 HOH B 28 328 46 HOH HOH . I 4 HOH B 29 329 47 HOH HOH . I 4 HOH B 30 330 57 HOH HOH . I 4 HOH B 31 331 58 HOH HOH . I 4 HOH B 32 332 59 HOH HOH . I 4 HOH B 33 333 60 HOH HOH . I 4 HOH B 34 334 61 HOH HOH . I 4 HOH B 35 335 62 HOH HOH . I 4 HOH B 36 336 63 HOH HOH . I 4 HOH B 37 337 64 HOH HOH . I 4 HOH B 38 338 65 HOH HOH . I 4 HOH B 39 339 66 HOH HOH . I 4 HOH B 40 340 67 HOH HOH . I 4 HOH B 41 341 68 HOH HOH . I 4 HOH B 42 342 71 HOH HOH . I 4 HOH B 43 343 72 HOH HOH . I 4 HOH B 44 344 74 HOH HOH . I 4 HOH B 45 345 75 HOH HOH . I 4 HOH B 46 346 76 HOH HOH . I 4 HOH B 47 347 77 HOH HOH . I 4 HOH B 48 348 80 HOH HOH . I 4 HOH B 49 349 82 HOH HOH . I 4 HOH B 50 350 83 HOH HOH . I 4 HOH B 51 351 87 HOH HOH . I 4 HOH B 52 352 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 26.036 14.712 -38.553 1 78.82 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . D 3 30.502 16.178 -37.209 1 79.75 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . D 3 28.447 19.61 -34.388 1 77.65 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . D 3 24.099 18.578 -36.331 1 75.98 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . D 3 27.428 14.762 -38.351 1 80.2 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . D 3 28.383 13.792 -38.902 1 81.78 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . D 3 29.631 14.295 -38.67 1 81.23 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . D 3 29.459 15.488 -37.84 1 80.22 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . D 3 30.937 13.797 -39.281 1 81.29 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . D 3 28.002 12.428 -39.478 1 84.16 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . D 3 27.477 12.532 -40.908 1 87.6 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . D 3 26.634 11.331 -41.32 1 89.69 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . D 3 26.231 11.266 -42.505 1 90.5 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . D 3 26.369 10.456 -40.459 1 91.01 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . D 3 30.317 17.259 -36.32 1 79.48 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . D 3 31.397 17.889 -35.555 1 79.77 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . D 3 30.817 18.77 -34.666 1 79.52 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . D 3 29.37 18.726 -34.941 1 78.68 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . D 3 32.902 17.707 -35.806 1 79.93 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . D 3 31.481 19.557 -33.717 1 79.52 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . D 3 32.243 18.961 -32.622 1 80.32 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . D 3 27.121 19.691 -34.779 1 76.82 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . D 3 26.223 20.712 -34.321 1 76.77 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . D 3 25.012 20.455 -34.894 1 76.79 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . D 3 25.157 19.253 -35.691 1 76.5 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . D 3 26.562 21.873 -33.398 1 76.2 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . D 3 23.868 21.221 -34.762 1 76.9 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . D 3 23.205 21.378 -33.475 1 77.83 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . D 3 24.239 17.425 -37.115 1 76.28 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . D 3 23.162 16.756 -37.862 1 76.52 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . D 3 23.684 15.655 -38.453 1 77.12 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . D 3 25.111 15.657 -38.096 1 77.64 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . D 3 21.718 17.218 -38.031 1 75.73 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . D 3 22.938 14.681 -39.374 1 77.58 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . D 3 23.004 15.127 -40.832 1 79.3 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . D 3 22.402 14.118 -41.794 1 80.5 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . D 3 21.172 13.904 -41.755 1 81.35 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . D 3 23.164 13.532 -42.593 1 81.66 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . D 3 28.095 15.795 -37.673 1 79.15 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . D 3 29.069 17.806 -35.965 1 78.45 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . D 3 26.488 18.829 -35.674 1 76.72 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . D 3 25.454 16.766 -37.308 1 77.15 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . D 3 27.291 17.35 -36.714 1 76.9 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #