data_1N3Z # _model_server_result.job_id clTeE6LtLamy-LP4FphsoQ _model_server_result.datetime_utc '2024-10-27 04:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":126}' # _entry.id 1N3Z # _exptl.entry_id 1N3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.2 _cell.angle_gamma 90 _cell.entry_id 1N3Z _cell.length_a 70.69 _cell.length_b 28.82 _cell.length_c 67.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A C MET 30 A MET 30 1_555 A N YCM 31 A YCM 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C YCM 31 A YCM 31 1_555 A N YCM 32 A YCM 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C YCM 32 A YCM 32 1_555 A N ARG 33 A ARG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1N3Z _atom_sites.fract_transf_matrix[1][1] 0.014146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007906 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U3P A 1 125 125 U3P U3P . C 3 ADN A 1 126 126 ADN ADN . D 4 HOH A 1 201 201 HOH WAT . D 4 HOH A 2 202 202 HOH WAT . D 4 HOH A 3 203 203 HOH WAT . D 4 HOH A 4 204 204 HOH WAT . D 4 HOH A 5 205 205 HOH WAT . D 4 HOH A 6 206 206 HOH WAT . D 4 HOH A 7 207 207 HOH WAT . D 4 HOH A 8 208 208 HOH WAT . D 4 HOH A 9 209 209 HOH WAT . D 4 HOH A 10 210 210 HOH WAT . D 4 HOH A 11 212 212 HOH WAT . D 4 HOH A 12 213 213 HOH WAT . D 4 HOH A 13 214 214 HOH WAT . D 4 HOH A 14 216 216 HOH WAT . D 4 HOH A 15 217 217 HOH WAT . D 4 HOH A 16 218 218 HOH WAT . D 4 HOH A 17 219 219 HOH WAT . D 4 HOH A 18 220 220 HOH WAT . D 4 HOH A 19 221 221 HOH WAT . D 4 HOH A 20 223 223 HOH WAT . D 4 HOH A 21 224 224 HOH WAT . D 4 HOH A 22 225 225 HOH WAT . D 4 HOH A 23 226 226 HOH WAT . D 4 HOH A 24 227 227 HOH WAT . D 4 HOH A 25 228 228 HOH WAT . D 4 HOH A 26 229 229 HOH WAT . D 4 HOH A 27 230 230 HOH WAT . D 4 HOH A 28 233 233 HOH WAT . D 4 HOH A 29 234 234 HOH WAT . D 4 HOH A 30 235 235 HOH WAT . D 4 HOH A 31 236 236 HOH WAT . D 4 HOH A 32 237 237 HOH WAT . D 4 HOH A 33 238 238 HOH WAT . D 4 HOH A 34 240 240 HOH WAT . D 4 HOH A 35 241 241 HOH WAT . D 4 HOH A 36 242 242 HOH WAT . D 4 HOH A 37 243 243 HOH WAT . D 4 HOH A 38 244 244 HOH WAT . D 4 HOH A 39 245 245 HOH WAT . D 4 HOH A 40 246 246 HOH WAT . D 4 HOH A 41 247 247 HOH WAT . D 4 HOH A 42 248 248 HOH WAT . D 4 HOH A 43 249 249 HOH WAT . D 4 HOH A 44 250 250 HOH WAT . D 4 HOH A 45 251 251 HOH WAT . D 4 HOH A 46 252 252 HOH WAT . D 4 HOH A 47 254 254 HOH WAT . D 4 HOH A 48 257 257 HOH WAT . D 4 HOH A 49 258 258 HOH WAT . D 4 HOH A 50 259 259 HOH WAT . D 4 HOH A 51 261 261 HOH WAT . D 4 HOH A 52 262 262 HOH WAT . D 4 HOH A 53 265 265 HOH WAT . D 4 HOH A 54 269 269 HOH WAT . D 4 HOH A 55 271 271 HOH WAT . D 4 HOH A 56 272 272 HOH WAT . D 4 HOH A 57 273 273 HOH WAT . D 4 HOH A 58 274 274 HOH WAT . D 4 HOH A 59 275 275 HOH WAT . D 4 HOH A 60 276 276 HOH WAT . D 4 HOH A 61 277 277 HOH WAT . D 4 HOH A 62 279 279 HOH WAT . D 4 HOH A 63 280 280 HOH WAT . D 4 HOH A 64 281 281 HOH WAT . D 4 HOH A 65 282 282 HOH WAT . D 4 HOH A 66 283 283 HOH WAT . D 4 HOH A 67 284 284 HOH WAT . D 4 HOH A 68 286 286 HOH WAT . D 4 HOH A 69 287 287 HOH WAT . D 4 HOH A 70 288 288 HOH WAT . D 4 HOH A 71 289 289 HOH WAT . D 4 HOH A 72 290 290 HOH WAT . D 4 HOH A 73 291 291 HOH WAT . D 4 HOH A 74 292 292 HOH WAT . D 4 HOH A 75 294 294 HOH WAT . D 4 HOH A 76 295 295 HOH WAT . D 4 HOH A 77 296 296 HOH WAT . D 4 HOH A 78 297 297 HOH WAT . D 4 HOH A 79 298 298 HOH WAT . D 4 HOH A 80 299 299 HOH WAT . D 4 HOH A 81 300 300 HOH WAT . D 4 HOH A 82 301 301 HOH WAT . D 4 HOH A 83 303 303 HOH WAT . D 4 HOH A 84 304 304 HOH WAT . D 4 HOH A 85 305 305 HOH WAT . D 4 HOH A 86 307 307 HOH WAT . D 4 HOH A 87 308 308 HOH WAT . D 4 HOH A 88 309 309 HOH WAT . D 4 HOH A 89 311 311 HOH WAT . D 4 HOH A 90 313 313 HOH WAT . D 4 HOH A 91 316 316 HOH WAT . D 4 HOH A 92 322 322 HOH WAT . D 4 HOH A 93 324 324 HOH WAT . D 4 HOH A 94 325 325 HOH WAT . D 4 HOH A 95 326 326 HOH WAT . D 4 HOH A 96 327 327 HOH WAT . D 4 HOH A 97 328 328 HOH WAT . D 4 HOH A 98 330 330 HOH WAT . D 4 HOH A 99 331 331 HOH WAT . D 4 HOH A 100 332 332 HOH WAT . D 4 HOH A 101 337 337 HOH WAT . D 4 HOH A 102 338 338 HOH WAT . D 4 HOH A 103 339 339 HOH WAT . D 4 HOH A 104 340 340 HOH WAT . D 4 HOH A 105 341 341 HOH WAT . D 4 HOH A 106 342 342 HOH WAT . D 4 HOH A 107 345 345 HOH WAT . D 4 HOH A 108 355 355 HOH WAT . D 4 HOH A 109 356 356 HOH WAT . D 4 HOH A 110 357 357 HOH WAT . D 4 HOH A 111 360 360 HOH WAT . D 4 HOH A 112 361 361 HOH WAT . D 4 HOH A 113 364 364 HOH WAT . D 4 HOH A 114 366 366 HOH WAT . D 4 HOH A 115 368 368 HOH WAT . D 4 HOH A 116 369 369 HOH WAT . D 4 HOH A 117 372 372 HOH WAT . D 4 HOH A 118 375 375 HOH WAT . D 4 HOH A 119 376 376 HOH WAT . D 4 HOH A 120 380 380 HOH WAT . D 4 HOH A 121 382 382 HOH WAT . D 4 HOH A 122 387 387 HOH WAT . D 4 HOH A 123 388 388 HOH WAT . D 4 HOH A 124 389 389 HOH WAT . D 4 HOH A 125 391 391 HOH WAT . D 4 HOH A 126 395 395 HOH WAT . D 4 HOH A 127 396 396 HOH WAT . D 4 HOH A 128 397 397 HOH WAT . D 4 HOH A 129 399 399 HOH WAT . D 4 HOH A 130 400 400 HOH WAT . D 4 HOH A 131 405 405 HOH WAT . D 4 HOH A 132 406 406 HOH WAT . D 4 HOH A 133 408 408 HOH WAT . D 4 HOH A 134 413 413 HOH WAT . D 4 HOH A 135 414 414 HOH WAT . D 4 HOH A 136 417 417 HOH WAT . D 4 HOH A 137 419 419 HOH WAT . D 4 HOH A 138 421 421 HOH WAT . D 4 HOH A 139 427 427 HOH WAT . D 4 HOH A 140 428 428 HOH WAT . D 4 HOH A 141 429 429 HOH WAT . D 4 HOH A 142 430 430 HOH WAT . D 4 HOH A 143 431 431 HOH WAT . D 4 HOH A 144 432 432 HOH WAT . D 4 HOH A 145 433 433 HOH WAT . D 4 HOH A 146 434 434 HOH WAT . D 4 HOH A 147 435 435 HOH WAT . D 4 HOH A 148 436 436 HOH WAT . D 4 HOH A 149 439 439 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . A . C 3 19.532 2.422 23.237 0.4 22.81 ? O5' ADN 126 A 1 HETATM 2 C C5' ADN . A . C 3 19.569 3.13 21.997 0.4 22.57 ? C5' ADN 126 A 1 HETATM 3 C C4' ADN . A . C 3 19.766 4.586 22.265 0.4 22.63 ? C4' ADN 126 A 1 HETATM 4 O O4' ADN . A . C 3 20.186 5.286 21.071 0.4 22.45 ? O4' ADN 126 A 1 HETATM 5 C C3' ADN . A . C 3 18.509 5.285 22.739 0.4 22.71 ? C3' ADN 126 A 1 HETATM 6 O O3' ADN . A . C 3 18.405 5.145 24.153 0.4 23.2 ? O3' ADN 126 A 1 HETATM 7 C C2' ADN . A . C 3 18.753 6.734 22.342 0.4 22.45 ? C2' ADN 126 A 1 HETATM 8 O O2' ADN . A . C 3 19.488 7.413 23.335 0.4 23.67 ? O2' ADN 126 A 1 HETATM 9 C C1' ADN . A . C 3 19.614 6.575 21.086 0.4 21.93 ? C1' ADN 126 A 1 HETATM 10 N N9 ADN . A . C 3 20.574 7.595 20.691 0.4 21.21 ? N9 ADN 126 A 1 HETATM 11 C C8 ADN . A . C 3 20.677 8.325 19.53 0.4 20.72 ? C8 ADN 126 A 1 HETATM 12 N N7 ADN . A . C 3 21.632 9.223 19.552 0.4 20.64 ? N7 ADN 126 A 1 HETATM 13 C C5 ADN . A . C 3 22.207 9.067 20.812 0.4 20.6 ? C5 ADN 126 A 1 HETATM 14 C C6 ADN . A . C 3 23.25 9.737 21.465 0.4 20.53 ? C6 ADN 126 A 1 HETATM 15 N N6 ADN . A . C 3 23.929 10.752 20.936 0.4 20.17 ? N6 ADN 126 A 1 HETATM 16 N N1 ADN . A . C 3 23.572 9.329 22.711 0.4 20.84 ? N1 ADN 126 A 1 HETATM 17 C C2 ADN . A . C 3 22.885 8.312 23.253 0.4 20.97 ? C2 ADN 126 A 1 HETATM 18 N N3 ADN . A . C 3 21.882 7.609 22.742 0.4 20.64 ? N3 ADN 126 A 1 HETATM 19 C C4 ADN . A . C 3 21.582 8.05 21.502 0.4 20.93 ? C4 ADN 126 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #