data_1N4F
#
_model_server_result.job_id            0qpEBBqXTVQRk-DqsDXW5Q 
_model_server_result.datetime_utc      '2025-09-07 11:06:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1n4f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":552}' 
#
_entry.id    1N4F 
#
_exptl.entry_id    1N4F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1N4F 
_cell.length_a            76.764 
_cell.length_b            76.764 
_cell.length_c            38.252 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1N4F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 500 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc5 K O HOH . A HOH 231 1_555 B NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc6 K O HOH . A HOH 287 1_555 B NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 102 n n 
C1 C2 EDO sing 103 n n 
C1 H11 EDO sing 104 n n 
C1 H12 EDO sing 105 n n 
O1 HO1 EDO sing 106 n n 
C2 O2 EDO sing 107 n n 
C2 H21 EDO sing 108 n n 
C2 H22 EDO sing 109 n n 
O2 HO2 EDO sing 110 n n 
#
_atom_sites.entry_id                     1N4F 
_atom_sites.fract_transf_matrix[1][1]    0.013027 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013027 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 500 500 NA NA . 
C 3 ASR A 1 140 140 ASR ASR . 
D 3 ASR A 1 141 141 ASR ASR . 
E 3 ASR A 1 142 142 ASR ASR . 
F 4 EDO A 1 549 549 EDO EDO . 
G 4 EDO A 1 550 550 EDO EDO . 
H 4 EDO A 1 551 551 EDO EDO . 
I 4 EDO A 1 552 552 EDO EDO . 
J 4 EDO A 1 553 553 EDO EDO . 
K 5 HOH A 1 201 201 HOH WAT . 
K 5 HOH A 2 202 202 HOH WAT . 
K 5 HOH A 3 203 203 HOH WAT . 
K 5 HOH A 4 204 204 HOH WAT . 
K 5 HOH A 5 205 205 HOH WAT . 
K 5 HOH A 6 206 206 HOH WAT . 
K 5 HOH A 7 207 207 HOH WAT . 
K 5 HOH A 8 208 208 HOH WAT . 
K 5 HOH A 9 209 209 HOH WAT . 
K 5 HOH A 10 210 210 HOH WAT . 
K 5 HOH A 11 211 211 HOH WAT . 
K 5 HOH A 12 212 212 HOH WAT . 
K 5 HOH A 13 213 213 HOH WAT . 
K 5 HOH A 14 214 214 HOH WAT . 
K 5 HOH A 15 215 215 HOH WAT . 
K 5 HOH A 16 216 216 HOH WAT . 
K 5 HOH A 17 217 217 HOH WAT . 
K 5 HOH A 18 218 218 HOH WAT . 
K 5 HOH A 19 219 219 HOH WAT . 
K 5 HOH A 20 220 220 HOH WAT . 
K 5 HOH A 21 221 221 HOH WAT . 
K 5 HOH A 22 222 222 HOH WAT . 
K 5 HOH A 23 223 223 HOH WAT . 
K 5 HOH A 24 224 224 HOH WAT . 
K 5 HOH A 25 225 225 HOH WAT . 
K 5 HOH A 26 226 226 HOH WAT . 
K 5 HOH A 27 227 227 HOH WAT . 
K 5 HOH A 28 228 228 HOH WAT . 
K 5 HOH A 29 229 229 HOH WAT . 
K 5 HOH A 30 230 230 HOH WAT . 
K 5 HOH A 31 231 231 HOH WAT . 
K 5 HOH A 32 232 232 HOH WAT . 
K 5 HOH A 33 233 233 HOH WAT . 
K 5 HOH A 34 234 234 HOH WAT . 
K 5 HOH A 35 235 235 HOH WAT . 
K 5 HOH A 36 236 236 HOH WAT . 
K 5 HOH A 37 237 237 HOH WAT . 
K 5 HOH A 38 238 238 HOH WAT . 
K 5 HOH A 39 239 239 HOH WAT . 
K 5 HOH A 40 240 240 HOH WAT . 
K 5 HOH A 41 241 241 HOH WAT . 
K 5 HOH A 42 242 242 HOH WAT . 
K 5 HOH A 43 243 243 HOH WAT . 
K 5 HOH A 44 244 244 HOH WAT . 
K 5 HOH A 45 245 245 HOH WAT . 
K 5 HOH A 46 246 246 HOH WAT . 
K 5 HOH A 47 247 247 HOH WAT . 
K 5 HOH A 48 248 248 HOH WAT . 
K 5 HOH A 49 249 249 HOH WAT . 
K 5 HOH A 50 250 250 HOH WAT . 
K 5 HOH A 51 251 251 HOH WAT . 
K 5 HOH A 52 252 252 HOH WAT . 
K 5 HOH A 53 253 253 HOH WAT . 
K 5 HOH A 54 254 254 HOH WAT . 
K 5 HOH A 55 255 255 HOH WAT . 
K 5 HOH A 56 256 256 HOH WAT . 
K 5 HOH A 57 257 257 HOH WAT . 
K 5 HOH A 58 258 258 HOH WAT . 
K 5 HOH A 59 259 259 HOH WAT . 
K 5 HOH A 60 260 260 HOH WAT . 
K 5 HOH A 61 261 261 HOH WAT . 
K 5 HOH A 62 262 262 HOH WAT . 
K 5 HOH A 63 263 263 HOH WAT . 
K 5 HOH A 64 264 264 HOH WAT . 
K 5 HOH A 65 265 265 HOH WAT . 
K 5 HOH A 66 266 266 HOH WAT . 
K 5 HOH A 67 267 267 HOH WAT . 
K 5 HOH A 68 268 268 HOH WAT . 
K 5 HOH A 69 269 269 HOH WAT . 
K 5 HOH A 70 270 270 HOH WAT . 
K 5 HOH A 71 271 271 HOH WAT . 
K 5 HOH A 72 272 272 HOH WAT . 
K 5 HOH A 73 273 273 HOH WAT . 
K 5 HOH A 74 274 274 HOH WAT . 
K 5 HOH A 75 275 275 HOH WAT . 
K 5 HOH A 76 276 276 HOH WAT . 
K 5 HOH A 77 277 277 HOH WAT . 
K 5 HOH A 78 278 278 HOH WAT . 
K 5 HOH A 79 279 279 HOH WAT . 
K 5 HOH A 80 280 280 HOH WAT . 
K 5 HOH A 81 281 281 HOH WAT . 
K 5 HOH A 82 282 282 HOH WAT . 
K 5 HOH A 83 283 283 HOH WAT . 
K 5 HOH A 84 284 284 HOH WAT . 
K 5 HOH A 85 285 285 HOH WAT . 
K 5 HOH A 86 286 286 HOH WAT . 
K 5 HOH A 87 287 287 HOH WAT . 
K 5 HOH A 88 288 288 HOH WAT . 
K 5 HOH A 89 289 289 HOH WAT . 
K 5 HOH A 90 290 290 HOH WAT . 
K 5 HOH A 91 291 291 HOH WAT . 
K 5 HOH A 92 292 292 HOH WAT . 
K 5 HOH A 93 293 293 HOH WAT . 
K 5 HOH A 94 294 294 HOH WAT . 
K 5 HOH A 95 295 295 HOH WAT . 
K 5 HOH A 96 296 296 HOH WAT . 
K 5 HOH A 97 297 297 HOH WAT . 
K 5 HOH A 98 298 298 HOH WAT . 
K 5 HOH A 99 299 299 HOH WAT . 
K 5 HOH A 100 300 300 HOH WAT . 
K 5 HOH A 101 301 301 HOH WAT . 
K 5 HOH A 102 302 302 HOH WAT . 
K 5 HOH A 103 303 303 HOH WAT . 
K 5 HOH A 104 304 304 HOH WAT . 
K 5 HOH A 105 305 305 HOH WAT . 
K 5 HOH A 106 306 306 HOH WAT . 
K 5 HOH A 107 307 307 HOH WAT . 
K 5 HOH A 108 308 308 HOH WAT . 
K 5 HOH A 109 309 309 HOH WAT . 
K 5 HOH A 110 310 310 HOH WAT . 
K 5 HOH A 111 311 311 HOH WAT . 
K 5 HOH A 112 312 312 HOH WAT . 
K 5 HOH A 113 313 313 HOH WAT . 
K 5 HOH A 114 314 314 HOH WAT . 
K 5 HOH A 115 315 315 HOH WAT . 
K 5 HOH A 116 316 316 HOH WAT . 
K 5 HOH A 117 317 317 HOH WAT . 
K 5 HOH A 118 318 318 HOH WAT . 
K 5 HOH A 119 319 319 HOH WAT . 
K 5 HOH A 120 320 320 HOH WAT . 
K 5 HOH A 121 321 321 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 28.088 -8.309 8.464 1 42.42 ? C1 EDO 552 A 1 
HETATM 2 O O1 EDO . . . I 4 28.144 -8.327 9.897 1 42.67 ? O1 EDO 552 A 1 
HETATM 3 C C2 EDO . . . I 4 28.257 -6.913 7.958 1 42.53 ? C2 EDO 552 A 1 
HETATM 4 O O2 EDO . . . I 4 27.064 -6.07 8.035 1 42.95 ? O2 EDO 552 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#