data_1N50 # _model_server_result.job_id o4iO8JZwFg8bkRTZ7wtVpA _model_server_result.datetime_utc '2024-11-13 09:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 1N50 # _exptl.entry_id 1N50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N50 _cell.length_a 165.53 _cell.length_b 89.85 _cell.length_c 112.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 47 A CYS 47 1_555 C CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale2 A SG CYS 50 A CYS 50 1_555 C CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale3 B SG CYS 47 B CYS 47 1_555 E CAB HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale4 B SG CYS 50 B CYS 50 1_555 E CAC HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A SD MET 88 A MET 88 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 D FE DHE . A DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 B NE2 HIS 51 B HIS 51 1_555 E FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc5 B SD MET 88 B MET 88 1_555 E FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 B NE2 HIS 182 B HIS 182 1_555 F FE DHE . B DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 217 n n FE NB HEC sing 218 n n FE NC HEC sing 219 n n FE ND HEC sing 220 n n CHA C1A HEC doub 221 n n CHA C4D HEC sing 222 n n CHA HHA HEC sing 223 n n CHB C4A HEC doub 224 n n CHB C1B HEC sing 225 n n CHB HHB HEC sing 226 n n CHC C4B HEC doub 227 n n CHC C1C HEC sing 228 n n CHC HHC HEC sing 229 n n CHD C4C HEC doub 230 n n CHD C1D HEC sing 231 n n CHD HHD HEC sing 232 n n NA C1A HEC sing 233 n y NA C4A HEC sing 234 n y C1A C2A HEC sing 235 n y C2A C3A HEC doub 236 n y C2A CAA HEC sing 237 n n C3A C4A HEC sing 238 n y C3A CMA HEC sing 239 n n CMA HMA1 HEC sing 240 n n CMA HMA2 HEC sing 241 n n CMA HMA3 HEC sing 242 n n CAA CBA HEC sing 243 n n CAA HAA1 HEC sing 244 n n CAA HAA2 HEC sing 245 n n CBA CGA HEC sing 246 n n CBA HBA1 HEC sing 247 n n CBA HBA2 HEC sing 248 n n CGA O1A HEC doub 249 n n CGA O2A HEC sing 250 n n O2A H2A HEC sing 251 n n NB C1B HEC sing 252 n y NB C4B HEC sing 253 n y C1B C2B HEC doub 254 n y C2B C3B HEC sing 255 n y C2B CMB HEC sing 256 n n C3B C4B HEC sing 257 n y C3B CAB HEC doub 258 e n CMB HMB1 HEC sing 259 n n CMB HMB2 HEC sing 260 n n CMB HMB3 HEC sing 261 n n CAB CBB HEC sing 262 n n CAB HAB HEC sing 263 n n CBB HBB1 HEC sing 264 n n CBB HBB2 HEC sing 265 n n CBB HBB3 HEC sing 266 n n NC C1C HEC sing 267 n y NC C4C HEC sing 268 n y C1C C2C HEC doub 269 n y C2C C3C HEC sing 270 n y C2C CMC HEC sing 271 n n C3C C4C HEC sing 272 n y C3C CAC HEC doub 273 e n CMC HMC1 HEC sing 274 n n CMC HMC2 HEC sing 275 n n CMC HMC3 HEC sing 276 n n CAC CBC HEC sing 277 n n CAC HAC HEC sing 278 n n CBC HBC1 HEC sing 279 n n CBC HBC2 HEC sing 280 n n CBC HBC3 HEC sing 281 n n ND C1D HEC sing 282 n y ND C4D HEC sing 283 n y C1D C2D HEC doub 284 n y C2D C3D HEC sing 285 n y C2D CMD HEC sing 286 n n C3D C4D HEC doub 287 n y C3D CAD HEC sing 288 n n CMD HMD1 HEC sing 289 n n CMD HMD2 HEC sing 290 n n CMD HMD3 HEC sing 291 n n CAD CBD HEC sing 292 n n CAD HAD1 HEC sing 293 n n CAD HAD2 HEC sing 294 n n CBD CGD HEC sing 295 n n CBD HBD1 HEC sing 296 n n CBD HBD2 HEC sing 297 n n CGD O1D HEC doub 298 n n CGD O2D HEC sing 299 n n O2D H2D HEC sing 300 n n # _atom_sites.entry_id 1N50 _atom_sites.fract_transf_matrix[1][1] 0.006041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 601 601 HEC HEC . D 3 DHE A 1 602 602 DHE DHE . E 2 HEC B 1 601 601 HEC HEC . F 3 DHE B 1 602 602 DHE DHE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 42.989 9.962 7.042 1 25.18 ? FE HEC 601 A 1 HETATM 2 C CHA HEC . . . C 2 42.816 6.598 7.296 1 25.18 ? CHA HEC 601 A 1 HETATM 3 C CHB HEC . . . C 2 45.999 9.779 8.601 1 25.18 ? CHB HEC 601 A 1 HETATM 4 C CHC HEC . . . C 2 43.561 13.258 6.639 1 25.18 ? CHC HEC 601 A 1 HETATM 5 C CHD HEC . . . C 2 39.864 10.28 5.974 1 25.18 ? CHD HEC 601 A 1 HETATM 6 N NA HEC . . . C 2 44.132 8.49 7.721 1 25.18 ? NA HEC 601 A 1 HETATM 7 C C1A HEC . . . C 2 43.938 7.152 7.732 1 25.18 ? C1A HEC 601 A 1 HETATM 8 C C2A HEC . . . C 2 45.071 6.427 8.184 1 25.18 ? C2A HEC 601 A 1 HETATM 9 C C3A HEC . . . C 2 46.016 7.314 8.551 1 25.18 ? C3A HEC 601 A 1 HETATM 10 C C4A HEC . . . C 2 45.406 8.59 8.248 1 25.18 ? C4A HEC 601 A 1 HETATM 11 C CMA HEC . . . C 2 47.379 6.998 9.128 1 25.18 ? CMA HEC 601 A 1 HETATM 12 C CAA HEC . . . C 2 45.214 4.902 8.18 1 25.18 ? CAA HEC 601 A 1 HETATM 13 C CBA HEC . . . C 2 44.529 4.383 9.411 1 25.18 ? CBA HEC 601 A 1 HETATM 14 C CGA HEC . . . C 2 44.788 2.925 9.615 1 25.18 ? CGA HEC 601 A 1 HETATM 15 O O1A HEC . . . C 2 44.097 2.127 8.941 1 25.18 ? O1A HEC 601 A 1 HETATM 16 O O2A HEC . . . C 2 45.68 2.595 10.445 1 25.18 ? O2A HEC 601 A 1 HETATM 17 N NB HEC . . . C 2 44.322 11.25 7.668 1 25.18 ? NB HEC 601 A 1 HETATM 18 C C1B HEC . . . C 2 45.473 11.041 8.394 1 25.18 ? C1B HEC 601 A 1 HETATM 19 C C2B HEC . . . C 2 46.284 12.224 8.543 1 25.18 ? C2B HEC 601 A 1 HETATM 20 C C3B HEC . . . C 2 45.635 13.154 7.808 1 25.18 ? C3B HEC 601 A 1 HETATM 21 C C4B HEC . . . C 2 44.444 12.565 7.355 1 25.18 ? C4B HEC 601 A 1 HETATM 22 C CMB HEC . . . C 2 47.569 12.282 9.369 1 25.18 ? CMB HEC 601 A 1 HETATM 23 C CAB HEC . . . C 2 45.887 14.63 7.583 1 25.18 ? CAB HEC 601 A 1 HETATM 24 C CBB HEC . . . C 2 47.267 15.186 7.184 1 25.18 ? CBB HEC 601 A 1 HETATM 25 N NC HEC . . . C 2 41.968 11.447 6.372 1 25.18 ? NC HEC 601 A 1 HETATM 26 C C1C HEC . . . C 2 42.409 12.718 6.127 1 25.18 ? C1C HEC 601 A 1 HETATM 27 C C2C HEC . . . C 2 41.25 13.513 5.664 1 25.18 ? C2C HEC 601 A 1 HETATM 28 C C3C HEC . . . C 2 40.187 12.665 5.563 1 25.18 ? C3C HEC 601 A 1 HETATM 29 C C4C HEC . . . C 2 40.618 11.444 6.088 1 25.18 ? C4C HEC 601 A 1 HETATM 30 C CMC HEC . . . C 2 41.238 15.035 5.409 1 25.18 ? CMC HEC 601 A 1 HETATM 31 C CAC HEC . . . C 2 38.767 12.921 5.056 1 25.18 ? CAC HEC 601 A 1 HETATM 32 C CBC HEC . . . C 2 38.448 13.879 3.906 1 25.18 ? CBC HEC 601 A 1 HETATM 33 N ND HEC . . . C 2 41.645 8.655 6.615 1 25.18 ? ND HEC 601 A 1 HETATM 34 C C1D HEC . . . C 2 40.369 8.949 6.152 1 25.18 ? C1D HEC 601 A 1 HETATM 35 C C2D HEC . . . C 2 39.595 7.723 5.999 1 25.18 ? C2D HEC 601 A 1 HETATM 36 C C3D HEC . . . C 2 40.399 6.717 6.377 1 25.18 ? C3D HEC 601 A 1 HETATM 37 C C4D HEC . . . C 2 41.719 7.296 6.77 1 25.18 ? C4D HEC 601 A 1 HETATM 38 C CMD HEC . . . C 2 38.193 7.52 5.52 1 25.18 ? CMD HEC 601 A 1 HETATM 39 C CAD HEC . . . C 2 40.083 5.233 6.185 1 25.18 ? CAD HEC 601 A 1 HETATM 40 C CBD HEC . . . C 2 40.622 4.802 4.831 1 25.18 ? CBD HEC 601 A 1 HETATM 41 C CGD HEC . . . C 2 40.608 3.297 4.628 1 25.18 ? CGD HEC 601 A 1 HETATM 42 O O1D HEC . . . C 2 40.847 2.872 3.461 1 25.18 ? O1D HEC 601 A 1 HETATM 43 O O2D HEC . . . C 2 40.382 2.542 5.615 1 25.18 ? O2D HEC 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #