data_1N5D
#
_model_server_result.job_id            diaO9m09LR394UYWFAPVgg 
_model_server_result.datetime_utc      '2025-01-02 17:38:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1n5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    1N5D 
#
_exptl.entry_id    1N5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1N5D 
_cell.length_a            58.53 
_cell.length_b            58.53 
_cell.length_c            165.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1N5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     1N5D 
_atom_sites.fract_transf_matrix[1][1]    0.017085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017085 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 400 400 SO4 SO4 . 
C 3 NDP A 1 300 300 NDP NDP . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 42 HOH HOH . 
D 4 HOH A 43 443 43 HOH HOH . 
D 4 HOH A 44 444 44 HOH HOH . 
D 4 HOH A 45 445 45 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 47 HOH HOH . 
D 4 HOH A 48 448 48 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 51 HOH HOH . 
D 4 HOH A 52 452 52 HOH HOH . 
D 4 HOH A 53 453 53 HOH HOH . 
D 4 HOH A 54 454 54 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 56 HOH HOH . 
D 4 HOH A 57 457 57 HOH HOH . 
D 4 HOH A 58 458 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 3 99.46 50.801 6.849 1 21.32 ? PA NDP 300 A 1 
HETATM 2 O O1A NDP . . . C 3 100.362 51.632 6.096 1 21.12 ? O1A NDP 300 A 1 
HETATM 3 O O2A NDP . . . C 3 99.672 49.324 6.984 1 19.61 ? O2A NDP 300 A 1 
HETATM 4 O O5B NDP . . . C 3 99.353 51.472 8.349 1 21.67 ? O5B NDP 300 A 1 
HETATM 5 C C5B NDP . . . C 3 98.507 50.834 9.326 1 21.76 ? C5B NDP 300 A 1 
HETATM 6 C C4B NDP . . . C 3 98.656 51.721 10.552 1 22.72 ? C4B NDP 300 A 1 
HETATM 7 O O4B NDP . . . C 3 97.841 51.116 11.603 1 23.8 ? O4B NDP 300 A 1 
HETATM 8 C C3B NDP . . . C 3 100.017 51.845 11.137 1 21.63 ? C3B NDP 300 A 1 
HETATM 9 O O3B NDP . . . C 3 100.29 53.182 11.636 1 22.33 ? O3B NDP 300 A 1 
HETATM 10 C C2B NDP . . . C 3 100.144 50.76 12.12 1 22.34 ? C2B NDP 300 A 1 
HETATM 11 O O2B NDP . . . C 3 101.118 50.856 13.155 1 24.66 ? O2B NDP 300 A 1 
HETATM 12 C C1B NDP . . . C 3 98.759 50.96 12.689 1 21.79 ? C1B NDP 300 A 1 
HETATM 13 N N9A NDP . . . C 3 98.395 49.843 13.604 1 19.95 ? N9A NDP 300 A 1 
HETATM 14 C C8A NDP . . . C 3 98.342 48.458 13.328 1 19.44 ? C8A NDP 300 A 1 
HETATM 15 N N7A NDP . . . C 3 97.991 47.776 14.393 1 19.47 ? N7A NDP 300 A 1 
HETATM 16 C C5A NDP . . . C 3 97.802 48.692 15.399 1 18.74 ? C5A NDP 300 A 1 
HETATM 17 C C6A NDP . . . C 3 97.43 48.603 16.772 1 17.68 ? C6A NDP 300 A 1 
HETATM 18 N N6A NDP . . . C 3 97.185 47.409 17.336 1 15.35 ? N6A NDP 300 A 1 
HETATM 19 N N1A NDP . . . C 3 97.326 49.744 17.503 1 17.81 ? N1A NDP 300 A 1 
HETATM 20 C C2A NDP . . . C 3 97.578 50.943 16.933 1 16.66 ? C2A NDP 300 A 1 
HETATM 21 N N3A NDP . . . C 3 97.941 51.132 15.663 1 17.87 ? N3A NDP 300 A 1 
HETATM 22 C C4A NDP . . . C 3 98.037 49.956 14.936 1 18.5 ? C4A NDP 300 A 1 
HETATM 23 O O3 NDP . . . C 3 97.938 51.013 6.45 1 19.92 ? O3 NDP 300 A 1 
HETATM 24 P PN NDP . . . C 3 97.101 51.687 5.287 1 19.32 ? PN NDP 300 A 1 
HETATM 25 O O1N NDP . . . C 3 97.483 50.965 4.093 1 21.18 ? O1N NDP 300 A 1 
HETATM 26 O O2N NDP . . . C 3 97.381 53.156 5.415 1 19.89 ? O2N NDP 300 A 1 
HETATM 27 O O5D NDP . . . C 3 95.564 51.476 5.712 1 20.14 ? O5D NDP 300 A 1 
HETATM 28 C C5D NDP . . . C 3 94.947 52.131 6.877 1 15.31 ? C5D NDP 300 A 1 
HETATM 29 C C4D NDP . . . C 3 93.44 51.72 6.901 1 14.95 ? C4D NDP 300 A 1 
HETATM 30 O O4D NDP . . . C 3 92.953 51.779 5.562 1 14.88 ? O4D NDP 300 A 1 
HETATM 31 C C3D NDP . . . C 3 93.213 50.27 7.343 1 15.05 ? C3D NDP 300 A 1 
HETATM 32 O O3D NDP . . . C 3 92.031 50.232 8.161 1 15.54 ? O3D NDP 300 A 1 
HETATM 33 C C2D NDP . . . C 3 93.087 49.502 6.06 1 13.62 ? C2D NDP 300 A 1 
HETATM 34 O O2D NDP . . . C 3 92.416 48.279 6.276 1 12.22 ? O2D NDP 300 A 1 
HETATM 35 C C1D NDP . . . C 3 92.281 50.559 5.233 1 14.29 ? C1D NDP 300 A 1 
HETATM 36 N N1N NDP . . . C 3 92.364 50.262 3.764 1 15.11 ? N1N NDP 300 A 1 
HETATM 37 C C2N NDP . . . C 3 93.629 50.396 3.119 1 12.6 ? C2N NDP 300 A 1 
HETATM 38 C C3N NDP . . . C 3 93.651 50.095 1.703 1 13.15 ? C3N NDP 300 A 1 
HETATM 39 C C7N NDP . . . C 3 94.906 50.215 0.931 1 13.66 ? C7N NDP 300 A 1 
HETATM 40 O O7N NDP . . . C 3 94.966 50.01 -0.304 1 13.28 ? O7N NDP 300 A 1 
HETATM 41 N N7N NDP . . . C 3 96.068 50.58 1.539 1 11.92 ? N7N NDP 300 A 1 
HETATM 42 C C4N NDP . . . C 3 92.456 49.699 1.079 1 13.54 ? C4N NDP 300 A 1 
HETATM 43 C C5N NDP . . . C 3 91.261 49.578 1.72 1 12.1 ? C5N NDP 300 A 1 
HETATM 44 C C6N NDP . . . C 3 91.211 49.859 3.059 1 14.13 ? C6N NDP 300 A 1 
HETATM 45 P P2B NDP . . . C 3 102.654 50.665 12.95 1 24.92 ? P2B NDP 300 A 1 
HETATM 46 O O1X NDP . . . C 3 102.753 49.304 12.397 1 26.06 ? O1X NDP 300 A 1 
HETATM 47 O O2X NDP . . . C 3 103.299 50.813 14.269 1 25.71 ? O2X NDP 300 A 1 
HETATM 48 O O3X NDP . . . C 3 103.206 51.688 11.957 1 24.9 ? O3X NDP 300 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#