data_1N5I # _model_server_result.job_id uygA4AELPwKMX0pgBgCIAQ _model_server_result.datetime_utc '2024-11-28 16:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":217}' # _entry.id 1N5I # _exptl.entry_id 1N5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N5I _cell.length_a 75.51 _cell.length_b 75.51 _cell.length_c 136.02 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N2 O8 P' _chem_comp.formula_weight 322.208 _chem_comp.id TMP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P TMP doub 376 n n P O2P TMP sing 377 n n P O3P TMP sing 378 n n P O5' TMP sing 379 n n O2P HOP2 TMP sing 380 n n O3P HOP3 TMP sing 381 n n O5' C5' TMP sing 382 n n C5' C4' TMP sing 383 n n C5' "H5'1" TMP sing 384 n n C5' "H5'2" TMP sing 385 n n C4' O4' TMP sing 386 n n C4' C3' TMP sing 387 n n C4' H4' TMP sing 388 n n O4' C1' TMP sing 389 n n C3' O3' TMP sing 390 n n C3' C2' TMP sing 391 n n C3' H3' TMP sing 392 n n O3' HO3' TMP sing 393 n n C2' C1' TMP sing 394 n n C2' "H2'1" TMP sing 395 n n C2' "H2'2" TMP sing 396 n n C1' N1 TMP sing 397 n n C1' H1' TMP sing 398 n n N1 C2 TMP sing 399 n n N1 C6 TMP sing 400 n n C2 O2 TMP doub 401 n n C2 N3 TMP sing 402 n n N3 C4 TMP sing 403 n n N3 HN3 TMP sing 404 n n C4 O4 TMP doub 405 n n C4 C5 TMP sing 406 n n C5 C5M TMP sing 407 n n C5 C6 TMP doub 408 n n C5M H51 TMP sing 409 n n C5M H52 TMP sing 410 n n C5M H53 TMP sing 411 n n C6 H6 TMP sing 412 n n # _atom_sites.entry_id 1N5I _atom_sites.fract_transf_matrix[1][1] 0.013243 _atom_sites.fract_transf_matrix[1][2] 0.007646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 215 1 SO4 SO4 . C 2 SO4 A 1 216 2 SO4 SO4 . D 3 FLC A 1 919 919 FLC CIT . E 4 TMP A 1 217 217 TMP TMP . F 5 ATP A 1 543 543 ATP ATP . G 6 HOH A 1 1001 1001 HOH TIP . G 6 HOH A 2 1002 1002 HOH TIP . G 6 HOH A 3 1003 1003 HOH TIP . G 6 HOH A 4 1004 1004 HOH TIP . G 6 HOH A 5 1005 1005 HOH TIP . G 6 HOH A 6 1006 1006 HOH TIP . G 6 HOH A 7 1007 1007 HOH TIP . G 6 HOH A 8 1008 1008 HOH TIP . G 6 HOH A 9 1009 1009 HOH TIP . G 6 HOH A 10 1010 1010 HOH TIP . G 6 HOH A 11 1011 1011 HOH TIP . G 6 HOH A 12 1012 1012 HOH TIP . G 6 HOH A 13 1013 1013 HOH TIP . G 6 HOH A 14 1014 1014 HOH TIP . G 6 HOH A 15 1015 1015 HOH TIP . G 6 HOH A 16 1016 1016 HOH TIP . G 6 HOH A 17 1017 1017 HOH TIP . G 6 HOH A 18 1018 1018 HOH TIP . G 6 HOH A 19 1019 1019 HOH TIP . G 6 HOH A 20 1020 1020 HOH TIP . G 6 HOH A 21 1021 1021 HOH TIP . G 6 HOH A 22 1022 1022 HOH TIP . G 6 HOH A 23 1023 1023 HOH TIP . G 6 HOH A 24 1024 1024 HOH TIP . G 6 HOH A 25 1025 1025 HOH TIP . G 6 HOH A 26 1026 1026 HOH TIP . G 6 HOH A 27 1027 1027 HOH TIP . G 6 HOH A 28 1028 1028 HOH TIP . G 6 HOH A 29 1029 1029 HOH TIP . G 6 HOH A 30 1030 1030 HOH TIP . G 6 HOH A 31 1031 1031 HOH TIP . G 6 HOH A 32 1032 1032 HOH TIP . G 6 HOH A 33 1033 1033 HOH TIP . G 6 HOH A 34 1034 1034 HOH TIP . G 6 HOH A 35 1035 1035 HOH TIP . G 6 HOH A 36 1036 1036 HOH TIP . G 6 HOH A 37 1037 1037 HOH TIP . G 6 HOH A 38 1038 1038 HOH TIP . G 6 HOH A 39 1039 1039 HOH TIP . G 6 HOH A 40 1042 1042 HOH TIP . G 6 HOH A 41 1043 1043 HOH TIP . G 6 HOH A 42 1044 1044 HOH TIP . G 6 HOH A 43 1045 1045 HOH TIP . G 6 HOH A 44 1046 1046 HOH TIP . G 6 HOH A 45 1047 1047 HOH TIP . G 6 HOH A 46 1048 1048 HOH TIP . G 6 HOH A 47 1049 1049 HOH TIP . G 6 HOH A 48 1050 1050 HOH TIP . G 6 HOH A 49 1051 1051 HOH TIP . G 6 HOH A 50 1052 1052 HOH TIP . G 6 HOH A 51 1053 1053 HOH TIP . G 6 HOH A 52 1054 1054 HOH TIP . G 6 HOH A 53 1055 1055 HOH TIP . G 6 HOH A 54 1056 1056 HOH TIP . G 6 HOH A 55 1057 1057 HOH TIP . G 6 HOH A 56 1058 1058 HOH TIP . G 6 HOH A 57 1059 1059 HOH TIP . G 6 HOH A 58 1060 1060 HOH TIP . G 6 HOH A 59 1061 1061 HOH TIP . G 6 HOH A 60 1062 1062 HOH TIP . G 6 HOH A 61 1063 1063 HOH TIP . G 6 HOH A 62 1064 1064 HOH TIP . G 6 HOH A 63 1065 1065 HOH TIP . G 6 HOH A 64 1066 1066 HOH TIP . G 6 HOH A 65 1067 1067 HOH TIP . G 6 HOH A 66 1068 1068 HOH TIP . G 6 HOH A 67 1069 1069 HOH TIP . G 6 HOH A 68 1070 1070 HOH TIP . G 6 HOH A 69 1071 1071 HOH TIP . G 6 HOH A 70 1072 1072 HOH TIP . G 6 HOH A 71 1073 1073 HOH TIP . G 6 HOH A 72 1074 1074 HOH TIP . G 6 HOH A 73 1075 1075 HOH TIP . G 6 HOH A 74 1076 1076 HOH TIP . G 6 HOH A 75 1079 1079 HOH TIP . G 6 HOH A 76 1080 1080 HOH TIP . G 6 HOH A 77 1081 1081 HOH TIP . G 6 HOH A 78 1082 1082 HOH TIP . G 6 HOH A 79 1084 1084 HOH TIP . G 6 HOH A 80 1085 1085 HOH TIP . G 6 HOH A 81 1086 1086 HOH TIP . G 6 HOH A 82 1087 1087 HOH TIP . G 6 HOH A 83 1088 1088 HOH TIP . G 6 HOH A 84 1089 1089 HOH TIP . G 6 HOH A 85 1091 1091 HOH TIP . G 6 HOH A 86 1092 1092 HOH TIP . G 6 HOH A 87 1095 1095 HOH TIP . G 6 HOH A 88 1097 1097 HOH TIP . G 6 HOH A 89 1098 1098 HOH TIP . G 6 HOH A 90 1099 1099 HOH TIP . G 6 HOH A 91 1100 1100 HOH TIP . G 6 HOH A 92 1101 1101 HOH TIP . G 6 HOH A 93 1102 1102 HOH TIP . G 6 HOH A 94 1103 1103 HOH TIP . G 6 HOH A 95 1104 1104 HOH TIP . G 6 HOH A 96 1105 1105 HOH TIP . G 6 HOH A 97 1106 1106 HOH TIP . G 6 HOH A 98 1107 1107 HOH TIP . G 6 HOH A 99 1108 1108 HOH TIP . G 6 HOH A 100 1109 1109 HOH TIP . G 6 HOH A 101 1110 1110 HOH TIP . G 6 HOH A 102 1111 1111 HOH TIP . G 6 HOH A 103 1112 1112 HOH TIP . G 6 HOH A 104 1113 1113 HOH TIP . G 6 HOH A 105 1114 1114 HOH TIP . G 6 HOH A 106 1115 1115 HOH TIP . G 6 HOH A 107 1116 1116 HOH TIP . G 6 HOH A 108 1117 1117 HOH TIP . G 6 HOH A 109 1119 1119 HOH TIP . G 6 HOH A 110 1120 1120 HOH TIP . G 6 HOH A 111 1121 1121 HOH TIP . G 6 HOH A 112 1122 1122 HOH TIP . G 6 HOH A 113 1123 1123 HOH TIP . G 6 HOH A 114 1124 1124 HOH TIP . G 6 HOH A 115 1126 1126 HOH TIP . G 6 HOH A 116 1127 1127 HOH TIP . G 6 HOH A 117 1129 1129 HOH TIP . G 6 HOH A 118 1130 1130 HOH TIP . G 6 HOH A 119 1131 1131 HOH TIP . G 6 HOH A 120 1132 1132 HOH TIP . G 6 HOH A 121 1134 1134 HOH TIP . G 6 HOH A 122 1136 1136 HOH TIP . G 6 HOH A 123 1137 1137 HOH TIP . G 6 HOH A 124 1138 1138 HOH TIP . G 6 HOH A 125 1139 1139 HOH TIP . G 6 HOH A 126 1140 1140 HOH TIP . G 6 HOH A 127 1141 1141 HOH TIP . G 6 HOH A 128 1142 1142 HOH TIP . G 6 HOH A 129 1143 1143 HOH TIP . G 6 HOH A 130 1144 1144 HOH TIP . G 6 HOH A 131 1145 1145 HOH TIP . G 6 HOH A 132 1146 1146 HOH TIP . G 6 HOH A 133 1147 1147 HOH TIP . G 6 HOH A 134 1148 1148 HOH TIP . G 6 HOH A 135 1149 1149 HOH TIP . G 6 HOH A 136 1150 1150 HOH TIP . G 6 HOH A 137 1151 1151 HOH TIP . G 6 HOH A 138 1152 1152 HOH TIP . G 6 HOH A 139 1153 1153 HOH TIP . G 6 HOH A 140 1154 1154 HOH TIP . G 6 HOH A 141 1155 1155 HOH TIP . G 6 HOH A 142 1156 1156 HOH TIP . G 6 HOH A 143 1157 1157 HOH TIP . G 6 HOH A 144 1158 1158 HOH TIP . G 6 HOH A 145 1159 1159 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P TMP . . . E 4 26.26 14.98 8.118 1 27 ? P TMP 217 A 1 HETATM 2 O O1P TMP . . . E 4 27.039 15.007 9.514 1 25.46 ? O1P TMP 217 A 1 HETATM 3 O O2P TMP . . . E 4 24.951 16.063 8.151 1 26.32 ? O2P TMP 217 A 1 HETATM 4 O O3P TMP . . . E 4 27.278 15.396 6.862 1 25.9 ? O3P TMP 217 A 1 HETATM 5 O O5' TMP . . . E 4 25.716 13.51 7.896 1 25.91 ? O5' TMP 217 A 1 HETATM 6 C C5' TMP . . . E 4 25.037 13.154 6.733 1 25.54 ? C5' TMP 217 A 1 HETATM 7 C C4' TMP . . . E 4 23.621 12.581 7.026 1 23.74 ? C4' TMP 217 A 1 HETATM 8 O O4' TMP . . . E 4 23.542 11.172 7.363 1 24.53 ? O4' TMP 217 A 1 HETATM 9 C C3' TMP . . . E 4 22.671 13.073 8.17 1 23.69 ? C3' TMP 217 A 1 HETATM 10 O O3' TMP . . . E 4 21.193 13.107 7.964 1 26.66 ? O3' TMP 217 A 1 HETATM 11 C C2' TMP . . . E 4 23.332 12.293 9.31 1 23.79 ? C2' TMP 217 A 1 HETATM 12 C C1' TMP . . . E 4 23.343 10.9 8.747 1 23.86 ? C1' TMP 217 A 1 HETATM 13 N N1 TMP . . . E 4 24.392 9.954 9.147 1 21 ? N1 TMP 217 A 1 HETATM 14 C C2 TMP . . . E 4 23.955 8.667 9.386 1 22.31 ? C2 TMP 217 A 1 HETATM 15 O O2 TMP . . . E 4 22.695 8.358 9.254 1 20.56 ? O2 TMP 217 A 1 HETATM 16 N N3 TMP . . . E 4 24.82 7.694 9.778 1 17.84 ? N3 TMP 217 A 1 HETATM 17 C C4 TMP . . . E 4 26.139 7.986 9.917 1 20.26 ? C4 TMP 217 A 1 HETATM 18 O O4 TMP . . . E 4 26.963 7.019 10.288 1 20.34 ? O4 TMP 217 A 1 HETATM 19 C C5 TMP . . . E 4 26.617 9.282 9.681 1 19.12 ? C5 TMP 217 A 1 HETATM 20 C C5M TMP . . . E 4 28.087 9.552 9.848 1 18.02 ? C5M TMP 217 A 1 HETATM 21 C C6 TMP . . . E 4 25.706 10.271 9.282 1 20.62 ? C6 TMP 217 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 658 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 21 #