data_1N5I # _model_server_result.job_id dOKgUJ-3ddXpxqZhZE2wSg _model_server_result.datetime_utc '2024-11-28 16:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":543}' # _entry.id 1N5I # _exptl.entry_id 1N5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N5I _cell.length_a 75.51 _cell.length_b 75.51 _cell.length_c 136.02 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1N5I _atom_sites.fract_transf_matrix[1][1] 0.013243 _atom_sites.fract_transf_matrix[1][2] 0.007646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 215 1 SO4 SO4 . C 2 SO4 A 1 216 2 SO4 SO4 . D 3 FLC A 1 919 919 FLC CIT . E 4 TMP A 1 217 217 TMP TMP . F 5 ATP A 1 543 543 ATP ATP . G 6 HOH A 1 1001 1001 HOH TIP . G 6 HOH A 2 1002 1002 HOH TIP . G 6 HOH A 3 1003 1003 HOH TIP . G 6 HOH A 4 1004 1004 HOH TIP . G 6 HOH A 5 1005 1005 HOH TIP . G 6 HOH A 6 1006 1006 HOH TIP . G 6 HOH A 7 1007 1007 HOH TIP . G 6 HOH A 8 1008 1008 HOH TIP . G 6 HOH A 9 1009 1009 HOH TIP . G 6 HOH A 10 1010 1010 HOH TIP . G 6 HOH A 11 1011 1011 HOH TIP . G 6 HOH A 12 1012 1012 HOH TIP . G 6 HOH A 13 1013 1013 HOH TIP . G 6 HOH A 14 1014 1014 HOH TIP . G 6 HOH A 15 1015 1015 HOH TIP . G 6 HOH A 16 1016 1016 HOH TIP . G 6 HOH A 17 1017 1017 HOH TIP . G 6 HOH A 18 1018 1018 HOH TIP . G 6 HOH A 19 1019 1019 HOH TIP . G 6 HOH A 20 1020 1020 HOH TIP . G 6 HOH A 21 1021 1021 HOH TIP . G 6 HOH A 22 1022 1022 HOH TIP . G 6 HOH A 23 1023 1023 HOH TIP . G 6 HOH A 24 1024 1024 HOH TIP . G 6 HOH A 25 1025 1025 HOH TIP . G 6 HOH A 26 1026 1026 HOH TIP . G 6 HOH A 27 1027 1027 HOH TIP . G 6 HOH A 28 1028 1028 HOH TIP . G 6 HOH A 29 1029 1029 HOH TIP . G 6 HOH A 30 1030 1030 HOH TIP . G 6 HOH A 31 1031 1031 HOH TIP . G 6 HOH A 32 1032 1032 HOH TIP . G 6 HOH A 33 1033 1033 HOH TIP . G 6 HOH A 34 1034 1034 HOH TIP . G 6 HOH A 35 1035 1035 HOH TIP . G 6 HOH A 36 1036 1036 HOH TIP . G 6 HOH A 37 1037 1037 HOH TIP . G 6 HOH A 38 1038 1038 HOH TIP . G 6 HOH A 39 1039 1039 HOH TIP . G 6 HOH A 40 1042 1042 HOH TIP . G 6 HOH A 41 1043 1043 HOH TIP . G 6 HOH A 42 1044 1044 HOH TIP . G 6 HOH A 43 1045 1045 HOH TIP . G 6 HOH A 44 1046 1046 HOH TIP . G 6 HOH A 45 1047 1047 HOH TIP . G 6 HOH A 46 1048 1048 HOH TIP . G 6 HOH A 47 1049 1049 HOH TIP . G 6 HOH A 48 1050 1050 HOH TIP . G 6 HOH A 49 1051 1051 HOH TIP . G 6 HOH A 50 1052 1052 HOH TIP . G 6 HOH A 51 1053 1053 HOH TIP . G 6 HOH A 52 1054 1054 HOH TIP . G 6 HOH A 53 1055 1055 HOH TIP . G 6 HOH A 54 1056 1056 HOH TIP . G 6 HOH A 55 1057 1057 HOH TIP . G 6 HOH A 56 1058 1058 HOH TIP . G 6 HOH A 57 1059 1059 HOH TIP . G 6 HOH A 58 1060 1060 HOH TIP . G 6 HOH A 59 1061 1061 HOH TIP . G 6 HOH A 60 1062 1062 HOH TIP . G 6 HOH A 61 1063 1063 HOH TIP . G 6 HOH A 62 1064 1064 HOH TIP . G 6 HOH A 63 1065 1065 HOH TIP . G 6 HOH A 64 1066 1066 HOH TIP . G 6 HOH A 65 1067 1067 HOH TIP . G 6 HOH A 66 1068 1068 HOH TIP . G 6 HOH A 67 1069 1069 HOH TIP . G 6 HOH A 68 1070 1070 HOH TIP . G 6 HOH A 69 1071 1071 HOH TIP . G 6 HOH A 70 1072 1072 HOH TIP . G 6 HOH A 71 1073 1073 HOH TIP . G 6 HOH A 72 1074 1074 HOH TIP . G 6 HOH A 73 1075 1075 HOH TIP . G 6 HOH A 74 1076 1076 HOH TIP . G 6 HOH A 75 1079 1079 HOH TIP . G 6 HOH A 76 1080 1080 HOH TIP . G 6 HOH A 77 1081 1081 HOH TIP . G 6 HOH A 78 1082 1082 HOH TIP . G 6 HOH A 79 1084 1084 HOH TIP . G 6 HOH A 80 1085 1085 HOH TIP . G 6 HOH A 81 1086 1086 HOH TIP . G 6 HOH A 82 1087 1087 HOH TIP . G 6 HOH A 83 1088 1088 HOH TIP . G 6 HOH A 84 1089 1089 HOH TIP . G 6 HOH A 85 1091 1091 HOH TIP . G 6 HOH A 86 1092 1092 HOH TIP . G 6 HOH A 87 1095 1095 HOH TIP . G 6 HOH A 88 1097 1097 HOH TIP . G 6 HOH A 89 1098 1098 HOH TIP . G 6 HOH A 90 1099 1099 HOH TIP . G 6 HOH A 91 1100 1100 HOH TIP . G 6 HOH A 92 1101 1101 HOH TIP . G 6 HOH A 93 1102 1102 HOH TIP . G 6 HOH A 94 1103 1103 HOH TIP . G 6 HOH A 95 1104 1104 HOH TIP . G 6 HOH A 96 1105 1105 HOH TIP . G 6 HOH A 97 1106 1106 HOH TIP . G 6 HOH A 98 1107 1107 HOH TIP . G 6 HOH A 99 1108 1108 HOH TIP . G 6 HOH A 100 1109 1109 HOH TIP . G 6 HOH A 101 1110 1110 HOH TIP . G 6 HOH A 102 1111 1111 HOH TIP . G 6 HOH A 103 1112 1112 HOH TIP . G 6 HOH A 104 1113 1113 HOH TIP . G 6 HOH A 105 1114 1114 HOH TIP . G 6 HOH A 106 1115 1115 HOH TIP . G 6 HOH A 107 1116 1116 HOH TIP . G 6 HOH A 108 1117 1117 HOH TIP . G 6 HOH A 109 1119 1119 HOH TIP . G 6 HOH A 110 1120 1120 HOH TIP . G 6 HOH A 111 1121 1121 HOH TIP . G 6 HOH A 112 1122 1122 HOH TIP . G 6 HOH A 113 1123 1123 HOH TIP . G 6 HOH A 114 1124 1124 HOH TIP . G 6 HOH A 115 1126 1126 HOH TIP . G 6 HOH A 116 1127 1127 HOH TIP . G 6 HOH A 117 1129 1129 HOH TIP . G 6 HOH A 118 1130 1130 HOH TIP . G 6 HOH A 119 1131 1131 HOH TIP . G 6 HOH A 120 1132 1132 HOH TIP . G 6 HOH A 121 1134 1134 HOH TIP . G 6 HOH A 122 1136 1136 HOH TIP . G 6 HOH A 123 1137 1137 HOH TIP . G 6 HOH A 124 1138 1138 HOH TIP . G 6 HOH A 125 1139 1139 HOH TIP . G 6 HOH A 126 1140 1140 HOH TIP . G 6 HOH A 127 1141 1141 HOH TIP . G 6 HOH A 128 1142 1142 HOH TIP . G 6 HOH A 129 1143 1143 HOH TIP . G 6 HOH A 130 1144 1144 HOH TIP . G 6 HOH A 131 1145 1145 HOH TIP . G 6 HOH A 132 1146 1146 HOH TIP . G 6 HOH A 133 1147 1147 HOH TIP . G 6 HOH A 134 1148 1148 HOH TIP . G 6 HOH A 135 1149 1149 HOH TIP . G 6 HOH A 136 1150 1150 HOH TIP . G 6 HOH A 137 1151 1151 HOH TIP . G 6 HOH A 138 1152 1152 HOH TIP . G 6 HOH A 139 1153 1153 HOH TIP . G 6 HOH A 140 1154 1154 HOH TIP . G 6 HOH A 141 1155 1155 HOH TIP . G 6 HOH A 142 1156 1156 HOH TIP . G 6 HOH A 143 1157 1157 HOH TIP . G 6 HOH A 144 1158 1158 HOH TIP . G 6 HOH A 145 1159 1159 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 5 47.934 6.087 6.578 1 82.93 ? PG ATP 543 A 1 HETATM 2 O O1G ATP . . . F 5 47.719 4.637 6.292 1 82.61 ? O1G ATP 543 A 1 HETATM 3 O O2G ATP . . . F 5 46.69 6.889 6.666 1 82.04 ? O2G ATP 543 A 1 HETATM 4 O O3G ATP . . . F 5 48.771 6.256 7.788 1 82.37 ? O3G ATP 543 A 1 HETATM 5 P PB ATP . . . F 5 48.493 7.007 3.839 1 77.67 ? PB ATP 543 A 1 HETATM 6 O O1B ATP . . . F 5 49.546 7.605 3.088 1 78.16 ? O1B ATP 543 A 1 HETATM 7 O O2B ATP . . . F 5 47.287 6.489 3.215 1 77.96 ? O2B ATP 543 A 1 HETATM 8 O O3B ATP . . . F 5 48.752 6.794 5.397 1 79.65 ? O3B ATP 543 A 1 HETATM 9 P PA ATP . . . F 5 47.528 9.801 3.455 1 68.02 ? PA ATP 543 A 1 HETATM 10 O O1A ATP . . . F 5 46.145 10.07 3.146 1 67.87 ? O1A ATP 543 A 1 HETATM 11 O O2A ATP . . . F 5 48.617 10.66 2.98 1 68.74 ? O2A ATP 543 A 1 HETATM 12 O O3A ATP . . . F 5 47.897 8.508 4.265 1 72.94 ? O3A ATP 543 A 1 HETATM 13 O O5' ATP . . . F 5 47.145 10.461 4.684 1 62.79 ? O5' ATP 543 A 1 HETATM 14 C C5' ATP . . . F 5 47.33 10.904 5.831 1 53.94 ? C5' ATP 543 A 1 HETATM 15 C C4' ATP . . . F 5 47.556 11.95 6.838 1 47.93 ? C4' ATP 543 A 1 HETATM 16 O O4' ATP . . . F 5 46.338 12.741 6.839 1 42.56 ? O4' ATP 543 A 1 HETATM 17 C C3' ATP . . . F 5 47.614 10.995 7.959 1 45.34 ? C3' ATP 543 A 1 HETATM 18 O O3' ATP . . . F 5 48.57 11.298 8.952 1 46.74 ? O3' ATP 543 A 1 HETATM 19 C C2' ATP . . . F 5 46.13 10.923 8.427 1 43.61 ? C2' ATP 543 A 1 HETATM 20 O O2' ATP . . . F 5 46.073 10.875 9.826 1 47.08 ? O2' ATP 543 A 1 HETATM 21 C C1' ATP . . . F 5 45.426 12.195 7.846 1 39.92 ? C1' ATP 543 A 1 HETATM 22 N N9 ATP . . . F 5 44.114 11.995 7.189 1 34.57 ? N9 ATP 543 A 1 HETATM 23 C C8 ATP . . . F 5 43.712 11.172 6.124 1 33.15 ? C8 ATP 543 A 1 HETATM 24 N N7 ATP . . . F 5 42.451 11.278 5.816 1 31.04 ? N7 ATP 543 A 1 HETATM 25 C C5 ATP . . . F 5 42.003 12.223 6.732 1 29.59 ? C5 ATP 543 A 1 HETATM 26 C C6 ATP . . . F 5 40.718 12.834 6.979 1 29.32 ? C6 ATP 543 A 1 HETATM 27 N N6 ATP . . . F 5 39.644 12.536 6.268 1 26.54 ? N6 ATP 543 A 1 HETATM 28 N N1 ATP . . . F 5 40.61 13.767 7.999 1 27.76 ? N1 ATP 543 A 1 HETATM 29 C C2 ATP . . . F 5 41.675 14.101 8.745 1 28.62 ? C2 ATP 543 A 1 HETATM 30 N N3 ATP . . . F 5 42.923 13.608 8.613 1 30.84 ? N3 ATP 543 A 1 HETATM 31 C C4 ATP . . . F 5 43.009 12.652 7.561 1 31.9 ? C4 ATP 543 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #