data_1N5K # _model_server_result.job_id FnJYYqhaE3A8INxr-xaeQw _model_server_result.datetime_utc '2024-11-28 14:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":412}' # _entry.id 1N5K # _exptl.entry_id 1N5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N5K _cell.length_a 64.254 _cell.length_b 64.254 _cell.length_c 195.484 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 9 B ASP 9 1_555 G MG MG . B MG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 H O3P TMP . B TMP 411 1_555 G MG MG . B MG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc3 G MG MG . B MG 413 1_555 J O HOH . B HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 G MG MG . B MG 413 1_555 J O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1N5K _atom_sites.fract_transf_matrix[1][1] 0.015563 _atom_sites.fract_transf_matrix[1][2] 0.008986 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 410 210 ACT ACT . D 2 ACT A 1 414 214 ACT ACT . E 3 TMP A 1 409 209 TMP TMP . F 2 ACT B 1 412 212 ACT ACT . G 4 MG B 1 413 213 MG MG . H 3 TMP B 1 411 211 TMP TMP . I 5 HOH A 1 415 1 HOH TIP . I 5 HOH A 2 416 2 HOH TIP . I 5 HOH A 3 417 3 HOH TIP . I 5 HOH A 4 418 5 HOH TIP . I 5 HOH A 5 419 6 HOH TIP . I 5 HOH A 6 420 12 HOH TIP . I 5 HOH A 7 421 13 HOH TIP . I 5 HOH A 8 422 14 HOH TIP . I 5 HOH A 9 423 15 HOH TIP . I 5 HOH A 10 424 17 HOH TIP . I 5 HOH A 11 425 20 HOH TIP . I 5 HOH A 12 426 22 HOH TIP . I 5 HOH A 13 427 23 HOH TIP . I 5 HOH A 14 428 24 HOH TIP . I 5 HOH A 15 429 25 HOH TIP . I 5 HOH A 16 430 30 HOH TIP . I 5 HOH A 17 431 31 HOH TIP . I 5 HOH A 18 432 32 HOH TIP . I 5 HOH A 19 433 33 HOH TIP . I 5 HOH A 20 434 34 HOH TIP . I 5 HOH A 21 435 35 HOH TIP . I 5 HOH A 22 436 37 HOH TIP . I 5 HOH A 23 437 38 HOH TIP . I 5 HOH A 24 438 39 HOH TIP . I 5 HOH A 25 439 41 HOH TIP . I 5 HOH A 26 440 42 HOH TIP . I 5 HOH A 27 441 43 HOH TIP . I 5 HOH A 28 442 47 HOH TIP . I 5 HOH A 29 443 48 HOH TIP . I 5 HOH A 30 444 50 HOH TIP . I 5 HOH A 31 445 51 HOH TIP . I 5 HOH A 32 446 52 HOH TIP . I 5 HOH A 33 447 53 HOH TIP . I 5 HOH A 34 448 55 HOH TIP . I 5 HOH A 35 449 59 HOH TIP . I 5 HOH A 36 450 60 HOH TIP . I 5 HOH A 37 451 61 HOH TIP . I 5 HOH A 38 452 64 HOH TIP . I 5 HOH A 39 453 65 HOH TIP . I 5 HOH A 40 454 66 HOH TIP . I 5 HOH A 41 455 67 HOH TIP . I 5 HOH A 42 456 69 HOH TIP . I 5 HOH A 43 457 71 HOH TIP . I 5 HOH A 44 458 72 HOH TIP . I 5 HOH A 45 459 73 HOH TIP . I 5 HOH A 46 460 77 HOH TIP . I 5 HOH A 47 461 79 HOH TIP . I 5 HOH A 48 462 80 HOH TIP . I 5 HOH A 49 463 82 HOH TIP . I 5 HOH A 50 464 83 HOH TIP . I 5 HOH A 51 465 85 HOH TIP . I 5 HOH A 52 466 89 HOH TIP . I 5 HOH A 53 467 94 HOH TIP . I 5 HOH A 54 468 95 HOH TIP . I 5 HOH A 55 469 96 HOH TIP . I 5 HOH A 56 470 97 HOH TIP . I 5 HOH A 57 471 98 HOH TIP . I 5 HOH A 58 472 99 HOH TIP . I 5 HOH A 59 473 100 HOH TIP . I 5 HOH A 60 474 103 HOH TIP . I 5 HOH A 61 475 104 HOH TIP . I 5 HOH A 62 476 105 HOH TIP . I 5 HOH A 63 477 106 HOH TIP . I 5 HOH A 64 478 107 HOH TIP . I 5 HOH A 65 479 109 HOH TIP . I 5 HOH A 66 480 110 HOH TIP . I 5 HOH A 67 481 111 HOH TIP . I 5 HOH A 68 482 114 HOH TIP . I 5 HOH A 69 483 116 HOH TIP . I 5 HOH A 70 484 117 HOH TIP . I 5 HOH A 71 485 118 HOH TIP . I 5 HOH A 72 486 119 HOH TIP . I 5 HOH A 73 487 121 HOH TIP . I 5 HOH A 74 488 122 HOH TIP . I 5 HOH A 75 489 124 HOH TIP . I 5 HOH A 76 490 125 HOH TIP . I 5 HOH A 77 491 128 HOH TIP . I 5 HOH A 78 492 131 HOH TIP . I 5 HOH A 79 493 132 HOH TIP . I 5 HOH A 80 494 133 HOH TIP . I 5 HOH A 81 495 134 HOH TIP . I 5 HOH A 82 496 136 HOH TIP . I 5 HOH A 83 497 137 HOH TIP . I 5 HOH A 84 498 140 HOH TIP . I 5 HOH A 85 499 142 HOH TIP . I 5 HOH A 86 500 144 HOH TIP . I 5 HOH A 87 501 145 HOH TIP . I 5 HOH A 88 502 146 HOH TIP . I 5 HOH A 89 503 147 HOH TIP . I 5 HOH A 90 504 149 HOH TIP . I 5 HOH A 91 505 150 HOH TIP . I 5 HOH A 92 506 151 HOH TIP . I 5 HOH A 93 507 156 HOH TIP . I 5 HOH A 94 508 158 HOH TIP . I 5 HOH A 95 509 159 HOH TIP . I 5 HOH A 96 510 160 HOH TIP . I 5 HOH A 97 511 161 HOH TIP . I 5 HOH A 98 512 165 HOH TIP . I 5 HOH A 99 513 166 HOH TIP . I 5 HOH A 100 514 169 HOH TIP . I 5 HOH A 101 515 170 HOH TIP . I 5 HOH A 102 516 173 HOH TIP . I 5 HOH A 103 517 174 HOH TIP . I 5 HOH A 104 518 178 HOH TIP . I 5 HOH A 105 519 179 HOH TIP . I 5 HOH A 106 520 181 HOH TIP . I 5 HOH A 107 521 183 HOH TIP . I 5 HOH A 108 522 185 HOH TIP . I 5 HOH A 109 523 189 HOH TIP . I 5 HOH A 110 524 191 HOH TIP . I 5 HOH A 111 525 195 HOH TIP . I 5 HOH A 112 526 196 HOH TIP . I 5 HOH A 113 527 198 HOH TIP . I 5 HOH A 114 528 299 HOH TIP . I 5 HOH A 115 529 200 HOH TIP . I 5 HOH A 116 530 201 HOH TIP . I 5 HOH A 117 531 202 HOH TIP . I 5 HOH A 118 532 205 HOH TIP . I 5 HOH A 119 533 206 HOH TIP . I 5 HOH A 120 534 209 HOH TIP . I 5 HOH A 121 535 210 HOH TIP . I 5 HOH A 122 536 212 HOH TIP . I 5 HOH A 123 537 213 HOH TIP . I 5 HOH A 124 538 215 HOH TIP . I 5 HOH A 125 539 216 HOH TIP . I 5 HOH A 126 540 219 HOH TIP . I 5 HOH A 127 541 220 HOH TIP . I 5 HOH A 128 542 221 HOH TIP . I 5 HOH A 129 543 222 HOH TIP . I 5 HOH A 130 544 225 HOH TIP . I 5 HOH A 131 545 226 HOH TIP . I 5 HOH A 132 546 227 HOH TIP . I 5 HOH A 133 547 230 HOH TIP . I 5 HOH A 134 548 231 HOH TIP . I 5 HOH A 135 549 232 HOH TIP . I 5 HOH A 136 550 235 HOH TIP . I 5 HOH A 137 551 236 HOH TIP . J 5 HOH B 1 414 4 HOH TIP . J 5 HOH B 2 415 7 HOH TIP . J 5 HOH B 3 416 8 HOH TIP . J 5 HOH B 4 417 9 HOH TIP . J 5 HOH B 5 418 10 HOH TIP . J 5 HOH B 6 419 11 HOH TIP . J 5 HOH B 7 420 16 HOH TIP . J 5 HOH B 8 421 18 HOH TIP . J 5 HOH B 9 422 19 HOH TIP . J 5 HOH B 10 423 21 HOH TIP . J 5 HOH B 11 424 26 HOH TIP . J 5 HOH B 12 425 27 HOH TIP . J 5 HOH B 13 426 28 HOH TIP . J 5 HOH B 14 427 29 HOH TIP . J 5 HOH B 15 428 36 HOH TIP . J 5 HOH B 16 429 40 HOH TIP . J 5 HOH B 17 430 44 HOH TIP . J 5 HOH B 18 431 45 HOH TIP . J 5 HOH B 19 432 46 HOH TIP . J 5 HOH B 20 433 49 HOH TIP . J 5 HOH B 21 434 54 HOH TIP . J 5 HOH B 22 435 56 HOH TIP . J 5 HOH B 23 436 57 HOH TIP . J 5 HOH B 24 437 58 HOH TIP . J 5 HOH B 25 438 62 HOH TIP . J 5 HOH B 26 439 63 HOH TIP . J 5 HOH B 27 440 68 HOH TIP . J 5 HOH B 28 441 70 HOH TIP . J 5 HOH B 29 442 74 HOH TIP . J 5 HOH B 30 443 75 HOH TIP . J 5 HOH B 31 444 76 HOH TIP . J 5 HOH B 32 445 78 HOH TIP . J 5 HOH B 33 446 81 HOH TIP . J 5 HOH B 34 447 84 HOH TIP . J 5 HOH B 35 448 86 HOH TIP . J 5 HOH B 36 449 87 HOH TIP . J 5 HOH B 37 450 88 HOH TIP . J 5 HOH B 38 451 90 HOH TIP . J 5 HOH B 39 452 91 HOH TIP . J 5 HOH B 40 453 92 HOH TIP . J 5 HOH B 41 454 93 HOH TIP . J 5 HOH B 42 455 101 HOH TIP . J 5 HOH B 43 456 102 HOH TIP . J 5 HOH B 44 457 108 HOH TIP . J 5 HOH B 45 458 112 HOH TIP . J 5 HOH B 46 459 113 HOH TIP . J 5 HOH B 47 460 115 HOH TIP . J 5 HOH B 48 461 120 HOH TIP . J 5 HOH B 49 462 123 HOH TIP . J 5 HOH B 50 463 126 HOH TIP . J 5 HOH B 51 464 127 HOH TIP . J 5 HOH B 52 465 129 HOH TIP . J 5 HOH B 53 466 130 HOH TIP . J 5 HOH B 54 467 135 HOH TIP . J 5 HOH B 55 468 138 HOH TIP . J 5 HOH B 56 469 139 HOH TIP . J 5 HOH B 57 470 140 HOH TIP . J 5 HOH B 58 471 143 HOH TIP . J 5 HOH B 59 472 148 HOH TIP . J 5 HOH B 60 473 152 HOH TIP . J 5 HOH B 61 474 153 HOH TIP . J 5 HOH B 62 475 154 HOH TIP . J 5 HOH B 63 476 155 HOH TIP . J 5 HOH B 64 477 157 HOH TIP . J 5 HOH B 65 478 162 HOH TIP . J 5 HOH B 66 479 163 HOH TIP . J 5 HOH B 67 480 164 HOH TIP . J 5 HOH B 68 481 167 HOH TIP . J 5 HOH B 69 482 168 HOH TIP . J 5 HOH B 70 483 171 HOH TIP . J 5 HOH B 71 484 172 HOH TIP . J 5 HOH B 72 485 175 HOH TIP . J 5 HOH B 73 486 176 HOH TIP . J 5 HOH B 74 487 177 HOH TIP . J 5 HOH B 75 488 180 HOH TIP . J 5 HOH B 76 489 182 HOH TIP . J 5 HOH B 77 490 184 HOH TIP . J 5 HOH B 78 491 186 HOH TIP . J 5 HOH B 79 492 187 HOH TIP . J 5 HOH B 80 493 188 HOH TIP . J 5 HOH B 81 494 190 HOH TIP . J 5 HOH B 82 495 192 HOH TIP . J 5 HOH B 83 496 193 HOH TIP . J 5 HOH B 84 497 194 HOH TIP . J 5 HOH B 85 498 197 HOH TIP . J 5 HOH B 86 499 203 HOH TIP . J 5 HOH B 87 500 204 HOH TIP . J 5 HOH B 88 501 207 HOH TIP . J 5 HOH B 89 502 208 HOH TIP . J 5 HOH B 90 503 211 HOH TIP . J 5 HOH B 91 504 214 HOH TIP . J 5 HOH B 92 505 217 HOH TIP . J 5 HOH B 93 506 218 HOH TIP . J 5 HOH B 94 507 223 HOH TIP . J 5 HOH B 95 508 224 HOH TIP . J 5 HOH B 96 509 228 HOH TIP . J 5 HOH B 97 510 229 HOH TIP . J 5 HOH B 98 511 233 HOH TIP . J 5 HOH B 99 512 234 HOH TIP . J 5 HOH B 100 513 237 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . F 2 39.31 33.749 49.229 1 56.79 ? C ACT 412 B 1 HETATM 2 O O ACT . . . F 2 39.207 32.817 48.309 1 57.42 ? O ACT 412 B 1 HETATM 3 O OXT ACT . . . F 2 40.383 34.343 49.589 1 54.5 ? OXT ACT 412 B 1 HETATM 4 C CH3 ACT . . . F 2 38.113 34.222 49.986 1 56.42 ? CH3 ACT 412 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #