data_1N5Q # _model_server_result.job_id oh-x0_vq_Y2daMrJzsuB7Q _model_server_result.datetime_utc '2024-11-27 18:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1N5Q # _exptl.entry_id 1N5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.393 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-DIMETHYLAMINO-1,10,11,12-TETRAHYDROXY-3-OXO-3,4,4A,5-TETRAHYDRO-NAPHTHACENE-2-CARBOXYLIC ACID AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N5Q _cell.length_a 47.24 _cell.length_b 59.4 _cell.length_c 72.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 N2 O6' _chem_comp.formula_weight 396.393 _chem_comp.id TNC _chem_comp.mon_nstd_flag . _chem_comp.name '4-DIMETHYLAMINO-1,10,11,12-TETRAHYDROXY-3-OXO-3,4,4A,5-TETRAHYDRO-NAPHTHACENE-2-CARBOXYLIC ACID AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEHYDRATED SANCYCLINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 TNC doub 337 n y C2 C3 TNC sing 338 n y C2 C7 TNC sing 339 n y C1 C6 TNC sing 340 n y C1 HC1 TNC sing 341 n n C6 C5 TNC doub 342 n y C6 HC6 TNC sing 343 n n C5 C4 TNC sing 344 n y C5 HC5 TNC sing 345 n n C4 C3 TNC doub 346 n y C4 O1 TNC sing 347 n n C3 C10 TNC sing 348 n y O1 HO1 TNC sing 349 n n C8 C7 TNC doub 350 n y C8 C9 TNC sing 351 n y C8 C11 TNC sing 352 n n C7 HC7 TNC sing 353 n n C10 C9 TNC doub 354 n y C10 O2 TNC sing 355 n n C9 C14 TNC sing 356 n n O2 HO2 TNC sing 357 n n C12 C11 TNC sing 358 n n C12 C13 TNC sing 359 n n C12 C15 TNC sing 360 n n C12 HC12 TNC sing 361 n n C11 H111 TNC sing 362 n n C11 H112 TNC sing 363 n n C14 C13 TNC doub 364 n n C14 O3 TNC sing 365 n n C13 C18 TNC sing 366 n n O3 HO3 TNC sing 367 n n C15 C16 TNC sing 368 n n C15 N1 TNC sing 369 n n C15 HC15 TNC sing 370 n n C16 C17 TNC sing 371 n n C16 O5 TNC doub 372 n n C17 C18 TNC doub 373 n n C17 C19 TNC sing 374 n n C18 O4 TNC sing 375 n n O4 HO4 TNC sing 376 n n C19 N2 TNC sing 377 n n C19 O6 TNC doub 378 n n N2 HN21 TNC sing 379 n n N2 HN22 TNC sing 380 n n N1 C20 TNC sing 381 n n N1 C21 TNC sing 382 n n C20 H201 TNC sing 383 n n C20 H202 TNC sing 384 n n C20 H203 TNC sing 385 n n C21 H211 TNC sing 386 n n C21 H212 TNC sing 387 n n C21 H213 TNC sing 388 n n # _atom_sites.entry_id 1N5Q _atom_sites.fract_transf_matrix[1][1] 0.021169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P6G A 1 2001 1 P6G PEG . D 3 TNC B 1 1001 1 TNC SAN . E 4 HOH A 1 2002 1 HOH HOH . E 4 HOH A 2 2003 2 HOH HOH . E 4 HOH A 3 2004 3 HOH HOH . E 4 HOH A 4 2005 5 HOH HOH . E 4 HOH A 5 2006 7 HOH HOH . E 4 HOH A 6 2007 8 HOH HOH . E 4 HOH A 7 2008 9 HOH HOH . E 4 HOH A 8 2009 10 HOH HOH . E 4 HOH A 9 2010 12 HOH HOH . E 4 HOH A 10 2011 13 HOH HOH . E 4 HOH A 11 2012 14 HOH HOH . E 4 HOH A 12 2013 15 HOH HOH . E 4 HOH A 13 2014 17 HOH HOH . E 4 HOH A 14 2015 18 HOH HOH . E 4 HOH A 15 2016 19 HOH HOH . E 4 HOH A 16 2017 20 HOH HOH . E 4 HOH A 17 2018 21 HOH HOH . E 4 HOH A 18 2019 22 HOH HOH . E 4 HOH A 19 2020 23 HOH HOH . E 4 HOH A 20 2021 25 HOH HOH . E 4 HOH A 21 2022 26 HOH HOH . E 4 HOH A 22 2023 27 HOH HOH . E 4 HOH A 23 2024 28 HOH HOH . E 4 HOH A 24 2025 29 HOH HOH . E 4 HOH A 25 2026 32 HOH HOH . E 4 HOH A 26 2027 33 HOH HOH . E 4 HOH A 27 2028 34 HOH HOH . E 4 HOH A 28 2029 35 HOH HOH . E 4 HOH A 29 2030 36 HOH HOH . E 4 HOH A 30 2031 39 HOH HOH . E 4 HOH A 31 2032 41 HOH HOH . E 4 HOH A 32 2033 43 HOH HOH . E 4 HOH A 33 2034 44 HOH HOH . E 4 HOH A 34 2035 45 HOH HOH . E 4 HOH A 35 2036 46 HOH HOH . E 4 HOH A 36 2037 47 HOH HOH . E 4 HOH A 37 2038 48 HOH HOH . E 4 HOH A 38 2039 49 HOH HOH . E 4 HOH A 39 2040 50 HOH HOH . E 4 HOH A 40 2041 53 HOH HOH . E 4 HOH A 41 2042 54 HOH HOH . E 4 HOH A 42 2043 55 HOH HOH . E 4 HOH A 43 2044 56 HOH HOH . E 4 HOH A 44 2045 59 HOH HOH . E 4 HOH A 45 2046 60 HOH HOH . E 4 HOH A 46 2047 62 HOH HOH . E 4 HOH A 47 2048 63 HOH HOH . E 4 HOH A 48 2049 64 HOH HOH . E 4 HOH A 49 2050 68 HOH HOH . E 4 HOH A 50 2051 69 HOH HOH . E 4 HOH A 51 2052 72 HOH HOH . E 4 HOH A 52 2053 73 HOH HOH . E 4 HOH A 53 2054 75 HOH HOH . E 4 HOH A 54 2055 76 HOH HOH . E 4 HOH A 55 2056 77 HOH HOH . E 4 HOH A 56 2057 78 HOH HOH . E 4 HOH A 57 2058 81 HOH HOH . E 4 HOH A 58 2059 83 HOH HOH . E 4 HOH A 59 2060 85 HOH HOH . E 4 HOH A 60 2061 86 HOH HOH . E 4 HOH A 61 2062 87 HOH HOH . E 4 HOH A 62 2063 89 HOH HOH . E 4 HOH A 63 2064 91 HOH HOH . E 4 HOH A 64 2065 92 HOH HOH . E 4 HOH A 65 2066 94 HOH HOH . E 4 HOH A 66 2067 95 HOH HOH . E 4 HOH A 67 2068 96 HOH HOH . E 4 HOH A 68 2069 97 HOH HOH . E 4 HOH A 69 2070 98 HOH HOH . E 4 HOH A 70 2071 99 HOH HOH . E 4 HOH A 71 2072 100 HOH HOH . E 4 HOH A 72 2073 101 HOH HOH . E 4 HOH A 73 2074 104 HOH HOH . E 4 HOH A 74 2075 107 HOH HOH . E 4 HOH A 75 2076 108 HOH HOH . E 4 HOH A 76 2077 111 HOH HOH . E 4 HOH A 77 2078 112 HOH HOH . E 4 HOH A 78 2079 113 HOH HOH . E 4 HOH A 79 2080 115 HOH HOH . E 4 HOH A 80 2081 120 HOH HOH . E 4 HOH A 81 2082 121 HOH HOH . E 4 HOH A 82 2083 123 HOH HOH . E 4 HOH A 83 2084 125 HOH HOH . E 4 HOH A 84 2085 126 HOH HOH . E 4 HOH A 85 2086 127 HOH HOH . E 4 HOH A 86 2087 128 HOH HOH . E 4 HOH A 87 2088 129 HOH HOH . E 4 HOH A 88 2089 130 HOH HOH . E 4 HOH A 89 2090 133 HOH HOH . E 4 HOH A 90 2091 134 HOH HOH . E 4 HOH A 91 2092 136 HOH HOH . E 4 HOH A 92 2093 137 HOH HOH . E 4 HOH A 93 2094 138 HOH HOH . E 4 HOH A 94 2095 139 HOH HOH . E 4 HOH A 95 2096 140 HOH HOH . E 4 HOH A 96 2097 146 HOH HOH . E 4 HOH A 97 2098 148 HOH HOH . E 4 HOH A 98 2099 150 HOH HOH . E 4 HOH A 99 2100 151 HOH HOH . E 4 HOH A 100 2101 152 HOH HOH . E 4 HOH A 101 2102 153 HOH HOH . E 4 HOH A 102 2103 154 HOH HOH . E 4 HOH A 103 2104 155 HOH HOH . E 4 HOH A 104 2105 156 HOH HOH . E 4 HOH A 105 2106 158 HOH HOH . E 4 HOH A 106 2107 159 HOH HOH . E 4 HOH A 107 2108 160 HOH HOH . E 4 HOH A 108 2109 163 HOH HOH . E 4 HOH A 109 2110 164 HOH HOH . E 4 HOH A 110 2111 165 HOH HOH . E 4 HOH A 111 2112 166 HOH HOH . E 4 HOH A 112 2113 167 HOH HOH . E 4 HOH A 113 2114 168 HOH HOH . E 4 HOH A 114 2115 169 HOH HOH . E 4 HOH A 115 2116 170 HOH HOH . E 4 HOH A 116 2117 171 HOH HOH . E 4 HOH A 117 2118 172 HOH HOH . E 4 HOH A 118 2119 176 HOH HOH . E 4 HOH A 119 2120 177 HOH HOH . E 4 HOH A 120 2121 181 HOH HOH . E 4 HOH A 121 2122 182 HOH HOH . E 4 HOH A 122 2123 185 HOH HOH . E 4 HOH A 123 2124 186 HOH HOH . E 4 HOH A 124 2125 187 HOH HOH . F 4 HOH B 1 1002 4 HOH HOH . F 4 HOH B 2 1003 6 HOH HOH . F 4 HOH B 3 1004 11 HOH HOH . F 4 HOH B 4 1005 16 HOH HOH . F 4 HOH B 5 1006 30 HOH HOH . F 4 HOH B 6 1007 31 HOH HOH . F 4 HOH B 7 1008 37 HOH HOH . F 4 HOH B 8 1009 38 HOH HOH . F 4 HOH B 9 1010 40 HOH HOH . F 4 HOH B 10 1011 42 HOH HOH . F 4 HOH B 11 1012 51 HOH HOH . F 4 HOH B 12 1013 52 HOH HOH . F 4 HOH B 13 1014 57 HOH HOH . F 4 HOH B 14 1015 58 HOH HOH . F 4 HOH B 15 1016 61 HOH HOH . F 4 HOH B 16 1017 65 HOH HOH . F 4 HOH B 17 1018 66 HOH HOH . F 4 HOH B 18 1019 67 HOH HOH . F 4 HOH B 19 1020 70 HOH HOH . F 4 HOH B 20 1021 71 HOH HOH . F 4 HOH B 21 1022 74 HOH HOH . F 4 HOH B 22 1023 88 HOH HOH . F 4 HOH B 23 1024 90 HOH HOH . F 4 HOH B 24 1025 93 HOH HOH . F 4 HOH B 25 1026 102 HOH HOH . F 4 HOH B 26 1027 103 HOH HOH . F 4 HOH B 27 1028 105 HOH HOH . F 4 HOH B 28 1029 109 HOH HOH . F 4 HOH B 29 1030 114 HOH HOH . F 4 HOH B 30 1031 116 HOH HOH . F 4 HOH B 31 1032 117 HOH HOH . F 4 HOH B 32 1033 118 HOH HOH . F 4 HOH B 33 1034 119 HOH HOH . F 4 HOH B 34 1035 122 HOH HOH . F 4 HOH B 35 1036 131 HOH HOH . F 4 HOH B 36 1037 132 HOH HOH . F 4 HOH B 37 1038 135 HOH HOH . F 4 HOH B 38 1039 141 HOH HOH . F 4 HOH B 39 1040 142 HOH HOH . F 4 HOH B 40 1041 143 HOH HOH . F 4 HOH B 41 1042 144 HOH HOH . F 4 HOH B 42 1043 145 HOH HOH . F 4 HOH B 43 1044 147 HOH HOH . F 4 HOH B 44 1045 149 HOH HOH . F 4 HOH B 45 1046 157 HOH HOH . F 4 HOH B 46 1047 161 HOH HOH . F 4 HOH B 47 1048 162 HOH HOH . F 4 HOH B 48 1049 173 HOH HOH . F 4 HOH B 49 1050 174 HOH HOH . F 4 HOH B 50 1051 175 HOH HOH . F 4 HOH B 51 1052 178 HOH HOH . F 4 HOH B 52 1053 179 HOH HOH . F 4 HOH B 53 1054 180 HOH HOH . F 4 HOH B 54 1055 183 HOH HOH . F 4 HOH B 55 1056 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 TNC . . . D 3 32.659 26.462 -6.059 1 30.55 ? C2 TNC 1001 B 1 HETATM 2 C C1 TNC . . . D 3 33.565 25.549 -6.578 1 30.33 ? C1 TNC 1001 B 1 HETATM 3 C C6 TNC . . . D 3 34.762 25.973 -7.132 1 28.55 ? C6 TNC 1001 B 1 HETATM 4 C C5 TNC . . . D 3 35.119 27.301 -7.161 1 29.69 ? C5 TNC 1001 B 1 HETATM 5 C C4 TNC . . . D 3 34.217 28.222 -6.619 1 29.59 ? C4 TNC 1001 B 1 HETATM 6 C C3 TNC . . . D 3 33.015 27.797 -6.069 1 29.69 ? C3 TNC 1001 B 1 HETATM 7 O O1 TNC . . . D 3 34.538 29.563 -6.617 1 28.63 ? O1 TNC 1001 B 1 HETATM 8 C C8 TNC . . . D 3 30.553 27.01 -4.99 1 32.61 ? C8 TNC 1001 B 1 HETATM 9 C C7 TNC . . . D 3 31.516 26.069 -5.354 1 31.17 ? C7 TNC 1001 B 1 HETATM 10 C C10 TNC . . . D 3 32.124 28.713 -5.534 1 29.21 ? C10 TNC 1001 B 1 HETATM 11 C C9 TNC . . . D 3 30.89 28.365 -5.017 1 31.96 ? C9 TNC 1001 B 1 HETATM 12 O O2 TNC . . . D 3 32.52 30.019 -5.574 1 26.72 ? O2 TNC 1001 B 1 HETATM 13 C C12 TNC . . . D 3 28.481 27.561 -3.939 1 35.59 ? C12 TNC 1001 B 1 HETATM 14 C C11 TNC . . . D 3 29.546 26.668 -4.067 1 33.61 ? C11 TNC 1001 B 1 HETATM 15 C C14 TNC . . . D 3 30.016 29.292 -4.478 1 33.93 ? C14 TNC 1001 B 1 HETATM 16 C C13 TNC . . . D 3 28.784 28.927 -3.948 1 35.49 ? C13 TNC 1001 B 1 HETATM 17 O O3 TNC . . . D 3 30.346 30.642 -4.501 1 36.48 ? O3 TNC 1001 B 1 HETATM 18 C C15 TNC . . . D 3 27.316 27.182 -3.309 1 37.46 ? C15 TNC 1001 B 1 HETATM 19 C C16 TNC . . . D 3 26.313 28.077 -2.991 1 38.56 ? C16 TNC 1001 B 1 HETATM 20 C C17 TNC . . . D 3 26.596 29.416 -3.045 1 39.09 ? C17 TNC 1001 B 1 HETATM 21 C C18 TNC . . . D 3 27.833 29.833 -3.522 1 37.08 ? C18 TNC 1001 B 1 HETATM 22 O O4 TNC . . . D 3 28.002 31.212 -3.519 1 37.55 ? O4 TNC 1001 B 1 HETATM 23 C C19 TNC . . . D 3 25.583 30.362 -2.589 1 40.9 ? C19 TNC 1001 B 1 HETATM 24 O O5 TNC . . . D 3 25.096 27.597 -2.527 1 41.05 ? O5 TNC 1001 B 1 HETATM 25 N N2 TNC . . . D 3 24.306 29.901 -2.597 1 41.94 ? N2 TNC 1001 B 1 HETATM 26 O O6 TNC . . . D 3 25.748 31.521 -2.226 1 40.91 ? O6 TNC 1001 B 1 HETATM 27 N N1 TNC . . . D 3 26.835 25.845 -3.415 1 36.72 ? N1 TNC 1001 B 1 HETATM 28 C C20 TNC . . . D 3 25.85 25.612 -2.389 1 39.35 ? C20 TNC 1001 B 1 HETATM 29 C C21 TNC . . . D 3 27.976 24.977 -3.224 1 38.74 ? C21 TNC 1001 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #