data_1N6B # _model_server_result.job_id WLgWgvxqbhcM8_X0YFHNbg _model_server_result.datetime_utc '2024-10-16 10:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1N6B # _exptl.entry_id 1N6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N6B _cell.length_a 74.33 _cell.length_b 134.29 _cell.length_c 171.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 414 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 432 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.315 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 171 n n CHA C4D HEM doub 172 n n CHA HHA HEM sing 173 n n CHB C4A HEM sing 174 n n CHB C1B HEM doub 175 n n CHB HHB HEM sing 176 n n CHC C4B HEM sing 177 n n CHC C1C HEM doub 178 n n CHC HHC HEM sing 179 n n CHD C4C HEM doub 180 n n CHD C1D HEM sing 181 n n CHD HHD HEM sing 182 n n C1A C2A HEM doub 183 n y C1A NA HEM sing 184 n y C2A C3A HEM sing 185 n y C2A CAA HEM sing 186 n n C3A C4A HEM doub 187 n y C3A CMA HEM sing 188 n n C4A NA HEM sing 189 n y CMA HMA HEM sing 190 n n CMA HMAA HEM sing 191 n n CMA HMAB HEM sing 192 n n CAA CBA HEM sing 193 n n CAA HAA HEM sing 194 n n CAA HAAA HEM sing 195 n n CBA CGA HEM sing 196 n n CBA HBA HEM sing 197 n n CBA HBAA HEM sing 198 n n CGA O1A HEM doub 199 n n CGA O2A HEM sing 200 n n C1B C2B HEM sing 201 n n C1B NB HEM sing 202 n n C2B C3B HEM doub 203 n n C2B CMB HEM sing 204 n n C3B C4B HEM sing 205 n n C3B CAB HEM sing 206 n n C4B NB HEM doub 207 n n CMB HMB HEM sing 208 n n CMB HMBA HEM sing 209 n n CMB HMBB HEM sing 210 n n CAB CBB HEM doub 211 n n CAB HAB HEM sing 212 n n CBB HBB HEM sing 213 n n CBB HBBA HEM sing 214 n n C1C C2C HEM sing 215 n y C1C NC HEM sing 216 n y C2C C3C HEM doub 217 n y C2C CMC HEM sing 218 n n C3C C4C HEM sing 219 n y C3C CAC HEM sing 220 n n C4C NC HEM sing 221 n y CMC HMC HEM sing 222 n n CMC HMCA HEM sing 223 n n CMC HMCB HEM sing 224 n n CAC CBC HEM doub 225 n n CAC HAC HEM sing 226 n n CBC HBC HEM sing 227 n n CBC HBCA HEM sing 228 n n C1D C2D HEM sing 229 n n C1D ND HEM doub 230 n n C2D C3D HEM doub 231 n n C2D CMD HEM sing 232 n n C3D C4D HEM sing 233 n n C3D CAD HEM sing 234 n n C4D ND HEM sing 235 n n CMD HMD HEM sing 236 n n CMD HMDA HEM sing 237 n n CMD HMDB HEM sing 238 n n CAD CBD HEM sing 239 n n CAD HAD HEM sing 240 n n CAD HADA HEM sing 241 n n CBD CGD HEM sing 242 n n CBD HBD HEM sing 243 n n CBD HBDA HEM sing 244 n n CGD O1D HEM doub 245 n n CGD O2D HEM sing 246 n n O2A H2A HEM sing 247 n n O2D H2D HEM sing 248 n n FE NA HEM sing 249 n n FE NB HEM sing 250 n n FE NC HEM sing 251 n n FE ND HEM sing 252 n n # _atom_sites.entry_id 1N6B _atom_sites.fract_transf_matrix[1][1] 0.013454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 502 502 SO4 SO4 . C 2 SO4 A 1 503 503 SO4 SO4 . D 3 HEM A 1 500 500 HEM HEM . E 4 DMZ A 1 501 501 DMZ DMZ . F 5 HOH A 1 600 600 HOH HOH . F 5 HOH A 2 601 601 HOH HOH . F 5 HOH A 3 602 602 HOH HOH . F 5 HOH A 4 603 603 HOH HOH . F 5 HOH A 5 604 604 HOH HOH . F 5 HOH A 6 605 605 HOH HOH . F 5 HOH A 7 606 606 HOH HOH . F 5 HOH A 8 607 607 HOH HOH . F 5 HOH A 9 608 608 HOH HOH . F 5 HOH A 10 609 609 HOH HOH . F 5 HOH A 11 610 610 HOH HOH . F 5 HOH A 12 611 611 HOH HOH . F 5 HOH A 13 612 612 HOH HOH . F 5 HOH A 14 613 613 HOH HOH . F 5 HOH A 15 614 614 HOH HOH . F 5 HOH A 16 615 615 HOH HOH . F 5 HOH A 17 616 616 HOH HOH . F 5 HOH A 18 619 619 HOH HOH . F 5 HOH A 19 620 620 HOH HOH . F 5 HOH A 20 621 621 HOH HOH . F 5 HOH A 21 622 622 HOH HOH . F 5 HOH A 22 623 623 HOH HOH . F 5 HOH A 23 624 624 HOH HOH . F 5 HOH A 24 625 625 HOH HOH . F 5 HOH A 25 626 626 HOH HOH . F 5 HOH A 26 627 627 HOH HOH . F 5 HOH A 27 629 629 HOH HOH . F 5 HOH A 28 631 631 HOH HOH . F 5 HOH A 29 632 632 HOH HOH . F 5 HOH A 30 633 633 HOH HOH . F 5 HOH A 31 634 634 HOH HOH . F 5 HOH A 32 635 635 HOH HOH . F 5 HOH A 33 636 636 HOH HOH . F 5 HOH A 34 637 637 HOH HOH . F 5 HOH A 35 638 638 HOH HOH . F 5 HOH A 36 640 640 HOH HOH . F 5 HOH A 37 641 641 HOH HOH . F 5 HOH A 38 643 643 HOH HOH . F 5 HOH A 39 644 644 HOH HOH . F 5 HOH A 40 646 646 HOH HOH . F 5 HOH A 41 648 648 HOH HOH . F 5 HOH A 42 649 649 HOH HOH . F 5 HOH A 43 652 652 HOH HOH . F 5 HOH A 44 654 654 HOH HOH . F 5 HOH A 45 655 655 HOH HOH . F 5 HOH A 46 656 656 HOH HOH . F 5 HOH A 47 657 657 HOH HOH . F 5 HOH A 48 658 658 HOH HOH . F 5 HOH A 49 660 660 HOH HOH . F 5 HOH A 50 662 662 HOH HOH . F 5 HOH A 51 663 663 HOH HOH . F 5 HOH A 52 664 664 HOH HOH . F 5 HOH A 53 665 665 HOH HOH . F 5 HOH A 54 667 667 HOH HOH . F 5 HOH A 55 669 669 HOH HOH . F 5 HOH A 56 670 670 HOH HOH . F 5 HOH A 57 671 671 HOH HOH . F 5 HOH A 58 677 677 HOH HOH . F 5 HOH A 59 678 678 HOH HOH . F 5 HOH A 60 680 680 HOH HOH . F 5 HOH A 61 683 683 HOH HOH . F 5 HOH A 62 684 684 HOH HOH . F 5 HOH A 63 685 685 HOH HOH . F 5 HOH A 64 687 687 HOH HOH . F 5 HOH A 65 688 688 HOH HOH . F 5 HOH A 66 689 689 HOH HOH . F 5 HOH A 67 691 691 HOH HOH . F 5 HOH A 68 692 692 HOH HOH . F 5 HOH A 69 694 694 HOH HOH . F 5 HOH A 70 695 695 HOH HOH . F 5 HOH A 71 696 696 HOH HOH . F 5 HOH A 72 698 698 HOH HOH . F 5 HOH A 73 701 701 HOH HOH . F 5 HOH A 74 704 704 HOH HOH . F 5 HOH A 75 705 705 HOH HOH . F 5 HOH A 76 708 708 HOH HOH . F 5 HOH A 77 710 710 HOH HOH . F 5 HOH A 78 720 720 HOH HOH . F 5 HOH A 79 721 721 HOH HOH . F 5 HOH A 80 722 722 HOH HOH . F 5 HOH A 81 723 723 HOH HOH . F 5 HOH A 82 727 727 HOH HOH . F 5 HOH A 83 737 737 HOH HOH . F 5 HOH A 84 739 739 HOH HOH . F 5 HOH A 85 745 745 HOH HOH . F 5 HOH A 86 746 746 HOH HOH . F 5 HOH A 87 747 747 HOH HOH . F 5 HOH A 88 751 751 HOH HOH . F 5 HOH A 89 755 755 HOH HOH . F 5 HOH A 90 757 757 HOH HOH . F 5 HOH A 91 759 759 HOH HOH . F 5 HOH A 92 764 764 HOH HOH . F 5 HOH A 93 768 768 HOH HOH . F 5 HOH A 94 774 774 HOH HOH . F 5 HOH A 95 788 788 HOH HOH . F 5 HOH A 96 800 800 HOH HOH . F 5 HOH A 97 802 802 HOH HOH . F 5 HOH A 98 804 804 HOH HOH . F 5 HOH A 99 806 806 HOH HOH . F 5 HOH A 100 808 808 HOH HOH . F 5 HOH A 101 810 810 HOH HOH . F 5 HOH A 102 812 812 HOH HOH . F 5 HOH A 103 813 813 HOH HOH . F 5 HOH A 104 814 814 HOH HOH . F 5 HOH A 105 815 815 HOH HOH . F 5 HOH A 106 816 816 HOH HOH . F 5 HOH A 107 817 817 HOH HOH . F 5 HOH A 108 818 818 HOH HOH . F 5 HOH A 109 819 819 HOH HOH . F 5 HOH A 110 820 820 HOH HOH . F 5 HOH A 111 821 821 HOH HOH . F 5 HOH A 112 822 822 HOH HOH . F 5 HOH A 113 823 823 HOH HOH . F 5 HOH A 114 824 824 HOH HOH . F 5 HOH A 115 825 825 HOH HOH . F 5 HOH A 116 826 826 HOH HOH . F 5 HOH A 117 827 827 HOH HOH . F 5 HOH A 118 828 828 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 -13.336 -19.346 -29.081 1 33.08 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . D 3 -9.427 -21.926 -29.584 1 38.85 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . D 3 -9.542 -21.062 -34.199 1 36.37 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . D 3 -13.608 -18.841 -33.678 1 37.9 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . D 3 -12.197 -20.034 -28.734 1 31.25 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . D 3 -11.813 -20.378 -27.447 1 31.09 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . D 3 -10.696 -21.184 -27.595 1 25.78 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . D 3 -10.469 -21.278 -28.977 1 39.04 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . D 3 -9.842 -21.86 -26.485 1 29.56 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . D 3 -12.537 -19.916 -26.166 1 43.07 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . D 3 -13.642 -20.802 -25.662 1 45.79 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . D 3 -14.306 -20.297 -24.389 1 52.06 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . D 3 -14.248 -20.963 -23.37 1 50.97 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . D 3 -14.907 -19.244 -24.365 1 54.43 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . D 3 -8.965 -21.849 -30.891 1 35.23 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . D 3 -7.799 -22.444 -31.413 1 30.92 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . D 3 -7.856 -22.176 -32.804 1 40.8 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . D 3 -9.041 -21.45 -32.982 1 36.12 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . D 3 -6.766 -23.182 -30.609 1 25.77 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . D 3 -6.959 -22.528 -33.852 1 37.02 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . D 3 -5.831 -23.48 -33.841 1 42.15 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . D 3 -10.777 -20.596 -34.539 1 43.73 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . D 3 -11.198 -20.358 -35.823 1 43.2 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . D 3 -12.393 -19.611 -35.707 1 42.75 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . D 3 -12.58 -19.469 -34.322 1 45.86 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . D 3 -10.478 -20.829 -37.108 1 44.65 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . D 3 -13.266 -19.082 -36.607 1 40.87 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . D 3 -13.486 -19.407 -37.963 1 38.4 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . D 3 -13.761 -18.598 -32.388 1 38.29 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . D 3 -14.851 -17.912 -31.87 1 30.86 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . D 3 -14.87 -18.137 -30.528 1 34.73 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . D 3 -13.764 -18.961 -30.307 1 30.64 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . D 3 -15.836 -17.067 -32.658 1 29.38 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . D 3 -15.869 -17.615 -29.461 1 34.89 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . D 3 -17.077 -18.572 -29.231 1 35.87 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . D 3 -18.138 -18.128 -28.182 1 53.83 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . D 3 -19.26 -18.65 -28.143 1 42.19 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . D 3 -17.826 -17.207 -27.374 1 46.44 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . D 3 -11.36 -20.594 -29.653 1 36.31 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . D 3 -9.668 -21.276 -31.849 1 33.62 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . D 3 -11.595 -20.07 -33.654 1 39.7 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . D 3 -13.131 -19.213 -31.445 1 35.9 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . D 3 -11.439 -20.319 -31.662 1 39.34 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #