data_1N6C # _model_server_result.job_id o51rhgaieYpLok0WFmyO3Q _model_server_result.datetime_utc '2024-11-23 00:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":402}' # _entry.id 1N6C # _exptl.entry_id 1N6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N6C _cell.length_a 93.454 _cell.length_b 93.454 _cell.length_c 110.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1N6C _atom_sites.fract_transf_matrix[1][1] 0.0107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 402 402 SAM SAM . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1029 1029 HOH HOH . C 3 HOH A 29 1030 1030 HOH HOH . C 3 HOH A 30 1031 1031 HOH HOH . C 3 HOH A 31 1032 1032 HOH HOH . C 3 HOH A 32 1033 1033 HOH HOH . C 3 HOH A 33 1034 1034 HOH HOH . C 3 HOH A 34 1035 1035 HOH HOH . C 3 HOH A 35 1036 1036 HOH HOH . C 3 HOH A 36 1037 1037 HOH HOH . C 3 HOH A 37 1038 1038 HOH HOH . C 3 HOH A 38 1039 1039 HOH HOH . C 3 HOH A 39 1040 1040 HOH HOH . C 3 HOH A 40 1041 1041 HOH HOH . C 3 HOH A 41 1042 1042 HOH HOH . C 3 HOH A 42 1043 1043 HOH HOH . C 3 HOH A 43 1045 1045 HOH HOH . C 3 HOH A 44 1046 1046 HOH HOH . C 3 HOH A 45 1047 1047 HOH HOH . C 3 HOH A 46 1048 1048 HOH HOH . C 3 HOH A 47 1049 1049 HOH HOH . C 3 HOH A 48 1050 1050 HOH HOH . C 3 HOH A 49 1051 1051 HOH HOH . C 3 HOH A 50 1052 1052 HOH HOH . C 3 HOH A 51 1053 1053 HOH HOH . C 3 HOH A 52 1054 1054 HOH HOH . C 3 HOH A 53 1056 1056 HOH HOH . C 3 HOH A 54 1057 1057 HOH HOH . C 3 HOH A 55 1058 1058 HOH HOH . C 3 HOH A 56 1059 1059 HOH HOH . C 3 HOH A 57 1060 1060 HOH HOH . C 3 HOH A 58 1061 1061 HOH HOH . C 3 HOH A 59 1062 1062 HOH HOH . C 3 HOH A 60 1063 1063 HOH HOH . C 3 HOH A 61 1064 1064 HOH HOH . C 3 HOH A 62 1065 1065 HOH HOH . C 3 HOH A 63 1066 1066 HOH HOH . C 3 HOH A 64 1067 1067 HOH HOH . C 3 HOH A 65 1068 1068 HOH HOH . C 3 HOH A 66 1069 1069 HOH HOH . C 3 HOH A 67 1071 1071 HOH HOH . C 3 HOH A 68 1072 1072 HOH HOH . C 3 HOH A 69 1073 1073 HOH HOH . C 3 HOH A 70 1074 1074 HOH HOH . C 3 HOH A 71 1075 1075 HOH HOH . C 3 HOH A 72 1076 1076 HOH HOH . C 3 HOH A 73 1077 1077 HOH HOH . C 3 HOH A 74 1078 1078 HOH HOH . C 3 HOH A 75 1079 1079 HOH HOH . C 3 HOH A 76 1080 1080 HOH HOH . C 3 HOH A 77 1081 1081 HOH HOH . C 3 HOH A 78 1082 1082 HOH HOH . C 3 HOH A 79 1086 1086 HOH HOH . C 3 HOH A 80 1087 1087 HOH HOH . C 3 HOH A 81 1088 1088 HOH HOH . C 3 HOH A 82 1089 1089 HOH HOH . C 3 HOH A 83 1090 1090 HOH HOH . C 3 HOH A 84 1092 1092 HOH HOH . C 3 HOH A 85 1093 1093 HOH HOH . C 3 HOH A 86 1094 1094 HOH HOH . C 3 HOH A 87 1096 1096 HOH HOH . C 3 HOH A 88 1097 1097 HOH HOH . C 3 HOH A 89 1099 1099 HOH HOH . C 3 HOH A 90 1100 1100 HOH HOH . C 3 HOH A 91 1102 1102 HOH HOH . C 3 HOH A 92 1103 1103 HOH HOH . C 3 HOH A 93 1104 1104 HOH HOH . C 3 HOH A 94 1107 1107 HOH HOH . C 3 HOH A 95 1108 1108 HOH HOH . C 3 HOH A 96 1109 1109 HOH HOH . C 3 HOH A 97 1110 1110 HOH HOH . C 3 HOH A 98 1111 1111 HOH HOH . C 3 HOH A 99 1112 1112 HOH HOH . C 3 HOH A 100 1113 1113 HOH HOH . C 3 HOH A 101 1116 1116 HOH HOH . C 3 HOH A 102 1118 1118 HOH HOH . C 3 HOH A 103 1120 1120 HOH HOH . C 3 HOH A 104 1121 1121 HOH HOH . C 3 HOH A 105 1122 1122 HOH HOH . C 3 HOH A 106 1125 1125 HOH HOH . C 3 HOH A 107 1126 1126 HOH HOH . C 3 HOH A 108 1129 1129 HOH HOH . C 3 HOH A 109 1130 1130 HOH HOH . C 3 HOH A 110 1131 1131 HOH HOH . C 3 HOH A 111 1132 1132 HOH HOH . C 3 HOH A 112 1135 1135 HOH HOH . C 3 HOH A 113 1136 1136 HOH HOH . C 3 HOH A 114 1138 1138 HOH HOH . C 3 HOH A 115 1139 1139 HOH HOH . C 3 HOH A 116 1140 1140 HOH HOH . C 3 HOH A 117 1141 1141 HOH HOH . C 3 HOH A 118 1142 1142 HOH HOH . C 3 HOH A 119 1146 1146 HOH HOH . C 3 HOH A 120 1147 1147 HOH HOH . C 3 HOH A 121 1148 1148 HOH HOH . C 3 HOH A 122 1149 1149 HOH HOH . C 3 HOH A 123 1150 1150 HOH HOH . C 3 HOH A 124 1151 1151 HOH HOH . C 3 HOH A 125 1152 1152 HOH HOH . C 3 HOH A 126 1153 1153 HOH HOH . C 3 HOH A 127 1154 1154 HOH HOH . C 3 HOH A 128 1155 1155 HOH HOH . C 3 HOH A 129 1156 1156 HOH HOH . C 3 HOH A 130 1157 1157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 9.41 51.791 21.077 1 23.12 ? N SAM 402 A 1 HETATM 2 C CA SAM . . . B 2 8.636 52.432 20.014 1 22.58 ? CA SAM 402 A 1 HETATM 3 C C SAM . . . B 2 8.408 51.591 18.764 1 23.13 ? C SAM 402 A 1 HETATM 4 O O SAM . . . B 2 8.848 50.436 18.694 1 24.17 ? O SAM 402 A 1 HETATM 5 O OXT SAM . . . B 2 7.773 52.067 17.797 1 23.96 ? OXT SAM 402 A 1 HETATM 6 C CB SAM . . . B 2 9.291 53.808 19.647 1 22.46 ? CB SAM 402 A 1 HETATM 7 C CG SAM . . . B 2 9.148 55.079 20.525 1 21.37 ? CG SAM 402 A 1 HETATM 8 S SD SAM . . . B 2 7.299 55.25 20.741 1 27.57 ? SD SAM 402 A 1 HETATM 9 C CE SAM . . . B 2 7.253 57.044 20.588 1 26.58 ? CE SAM 402 A 1 HETATM 10 C C5' SAM . . . B 2 6.659 55.031 22.489 1 28.4 ? C5' SAM 402 A 1 HETATM 11 C C4' SAM . . . B 2 6.529 53.655 23.038 1 29.7 ? C4' SAM 402 A 1 HETATM 12 O O4' SAM . . . B 2 7.794 52.959 23.101 1 29.62 ? O4' SAM 402 A 1 HETATM 13 C C3' SAM . . . B 2 6.005 53.406 24.449 1 28.72 ? C3' SAM 402 A 1 HETATM 14 O O3' SAM . . . B 2 4.72 53.943 24.553 1 32.08 ? O3' SAM 402 A 1 HETATM 15 C C2' SAM . . . B 2 6.463 51.906 24.701 1 29.66 ? C2' SAM 402 A 1 HETATM 16 O O2' SAM . . . B 2 5.423 51.197 24.177 1 32.36 ? O2' SAM 402 A 1 HETATM 17 C C1' SAM . . . B 2 7.951 52.261 24.371 1 28.7 ? C1' SAM 402 A 1 HETATM 18 N N9 SAM . . . B 2 9.039 53.059 24.965 1 25.66 ? N9 SAM 402 A 1 HETATM 19 C C8 SAM . . . B 2 9.767 54.276 24.878 1 25.86 ? C8 SAM 402 A 1 HETATM 20 N N7 SAM . . . B 2 10.714 54.447 25.754 1 25.45 ? N7 SAM 402 A 1 HETATM 21 C C5 SAM . . . B 2 10.675 53.293 26.523 1 24.25 ? C5 SAM 402 A 1 HETATM 22 C C6 SAM . . . B 2 11.455 52.819 27.673 1 22.79 ? C6 SAM 402 A 1 HETATM 23 N N6 SAM . . . B 2 12.453 53.519 28.227 1 21.65 ? N6 SAM 402 A 1 HETATM 24 N N1 SAM . . . B 2 11.146 51.555 28.24 1 24.51 ? N1 SAM 402 A 1 HETATM 25 C C2 SAM . . . B 2 10.127 50.794 27.71 1 21.46 ? C2 SAM 402 A 1 HETATM 26 N N3 SAM . . . B 2 9.325 51.114 26.644 1 25.54 ? N3 SAM 402 A 1 HETATM 27 C C4 SAM . . . B 2 9.659 52.415 26.076 1 24.95 ? C4 SAM 402 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #