data_1N73 # _model_server_result.job_id JHXRo9qPiOgXaiY79CwlrA _model_server_result.datetime_utc '2024-10-14 08:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":480}' # _entry.id 1N73 # _exptl.entry_id 1N73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.58 _cell.angle_beta 101.46 _cell.angle_gamma 92.36 _cell.entry_id 1N73 _cell.length_a 49.732 _cell.length_b 99.302 _cell.length_c 120.732 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 M N N ? 5 O N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 154 1_555 C SG CYS 56 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 77 A CYS 158 1_555 B SG CYS 58 B CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 62 B CYS 218 1_555 C SG CYS 60 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 B SG CYS 66 B CYS 222 1_555 B SG CYS 150 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 76 B CYS 232 1_555 B SG CYS 105 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf6 B SG CYS 258 B CYS 414 1_555 B SG CYS 271 B CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 C SG CYS 76 C CYS 154 1_555 C SG CYS 105 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 246 C CYS 324 1_555 C SG CYS 259 C CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 73 D CYS 154 1_555 F SG CYS 56 F CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 D SG CYS 77 D CYS 158 1_555 E SG CYS 58 E CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 E SG CYS 62 E CYS 218 1_555 F SG CYS 60 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 E SG CYS 66 E CYS 222 1_555 E SG CYS 150 E CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 E SG CYS 76 E CYS 232 1_555 E SG CYS 105 E CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 E SG CYS 258 E CYS 414 1_555 E SG CYS 271 E CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 F SG CYS 76 F CYS 154 1_555 F SG CYS 105 F CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 F SG CYS 246 F CYS 324 1_555 F SG CYS 259 F CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 B ND2 ASN 228 B ASN 384 1_555 K C1 NAG . B NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale2 B ND2 ASN 228 B ASN 384 1_555 K C2 NAG . B NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale3 C ND2 ASN 125 C ASN 203 1_555 M C1 NAG . C NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale4 C CD GLN 319 C GLN 397 1_555 F NZ LYS 323 F LYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C NZ LYS 323 C LYS 401 1_555 F CD GLN 319 F GLN 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 E ND2 ASN 228 E ASN 384 1_555 O C1 NAG . E NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale7 E ND2 ASN 228 E ASN 384 1_555 O C2 NAG . E NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale8 F ND2 ASN 125 F ASN 203 1_555 Q C1 NAG . F NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale9 F ND2 ASN 125 F ASN 203 1_555 Q O5 NAG . F NAG 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? metalc ? metalc1 L CA CA . B CA 3 1_555 B OD1 ASP 245 B ASP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc2 L CA CA . B CA 3 1_555 B OD2 ASP 245 B ASP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 L CA CA . B CA 3 1_555 B OD1 ASP 247 B ASP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 L CA CA . B CA 3 1_555 B O TRP 249 B TRP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 L CA CA . B CA 3 1_555 B O ASN 250 B ASN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.219 ? metalc ? metalc6 L CA CA . B CA 3 1_555 B O LYS 256 B LYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 N CA CA . C CA 1 1_555 C OD2 ASP 238 C ASP 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 N CA CA . C CA 1 1_555 C OD1 ASP 238 C ASP 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc9 N CA CA . C CA 1 1_555 C OD1 ASP 240 C ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 N CA CA . C CA 1 1_555 C O TYR 242 C TYR 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc11 N CA CA . C CA 1 1_555 C O GLY 244 C GLY 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc12 P CA CA . E CA 4 1_555 E OD1 ASP 245 E ASP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.22 ? metalc ? metalc13 P CA CA . E CA 4 1_555 E OD2 ASP 245 E ASP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc14 P CA CA . E CA 4 1_555 E OD1 ASP 247 E ASP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 P CA CA . E CA 4 1_555 E O TRP 249 E TRP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc16 P CA CA . E CA 4 1_555 E O ASN 250 E ASN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc17 P CA CA . E CA 4 1_555 E O LYS 256 E LYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc18 R CA CA . F CA 2 1_555 F OD2 ASP 238 F ASP 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc19 R CA CA . F CA 2 1_555 F OD1 ASP 238 F ASP 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc20 R CA CA . F CA 2 1_555 F OD1 ASP 240 F ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc21 R CA CA . F CA 2 1_555 F O TYR 242 F TYR 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc22 R CA CA . F CA 2 1_555 F O GLY 244 F GLY 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1N73 _atom_sites.fract_transf_matrix[1][1] 0.020108 _atom_sites.fract_transf_matrix[1][2] 0.000829 _atom_sites.fract_transf_matrix[1][3] 0.004293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010079 _atom_sites.fract_transf_matrix[2][3] 0.001826 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 NAG B 1 480 480 NAG NAG . L 6 CA B 1 3 3 CA CA . M 5 NAG C 1 480 480 NAG NAG . N 6 CA C 1 1 1 CA CA . O 5 NAG E 1 480 480 NAG NAG . P 6 CA E 1 4 4 CA CA . Q 5 NAG F 1 480 480 NAG NAG . R 6 CA F 1 2 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 5 -43.415 -102.634 53.515 1 103.26 ? C1 NAG 480 E 1 HETATM 2 C C2 NAG . . . O 5 -43.692 -103.855 52.614 1 103.42 ? C2 NAG 480 E 1 HETATM 3 C C3 NAG . . . O 5 -43.495 -105.174 53.413 1 111.69 ? C3 NAG 480 E 1 HETATM 4 C C4 NAG . . . O 5 -42.173 -105.17 54.201 1 108.5 ? C4 NAG 480 E 1 HETATM 5 C C5 NAG . . . O 5 -42.137 -103.932 55.076 1 102.19 ? C5 NAG 480 E 1 HETATM 6 C C6 NAG . . . O 5 -40.903 -103.854 55.948 1 89.58 ? C6 NAG 480 E 1 HETATM 7 C C7 NAG . . . O 5 -45.484 -104.538 51.094 1 71.92 ? C7 NAG 480 E 1 HETATM 8 C C8 NAG . . . O 5 -45.754 -103.884 49.752 1 62.73 ? C8 NAG 480 E 1 HETATM 9 N N2 NAG . . . O 5 -45.056 -103.762 52.097 1 82.02 ? N2 NAG 480 E 1 HETATM 10 O O3 NAG . . . O 5 -43.507 -106.286 52.527 1 114.83 ? O3 NAG 480 E 1 HETATM 11 O O4 NAG . . . O 5 -42.078 -106.329 55.013 1 102.73 ? O4 NAG 480 E 1 HETATM 12 O O5 NAG . . . O 5 -42.168 -102.761 54.234 1 108.45 ? O5 NAG 480 E 1 HETATM 13 O O6 NAG . . . O 5 -39.828 -103.231 55.267 1 85.35 ? O6 NAG 480 E 1 HETATM 14 O O7 NAG . . . O 5 -45.685 -105.746 51.224 1 71.09 ? O7 NAG 480 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #