data_1N7J # _model_server_result.job_id vxklLiY8HV4nPpPXdXAYDQ _model_server_result.datetime_utc '2024-12-21 13:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2002}' # _entry.id 1N7J # _exptl.entry_id 1N7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N7J _cell.length_a 94.74 _cell.length_b 94.74 _cell.length_c 186.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 299 n n N HN1 SAH sing 300 n n N HN2 SAH sing 301 n n CA CB SAH sing 302 n n CA C SAH sing 303 n n CA HA SAH sing 304 n n CB CG SAH sing 305 n n CB HB1 SAH sing 306 n n CB HB2 SAH sing 307 n n CG SD SAH sing 308 n n CG HG1 SAH sing 309 n n CG HG2 SAH sing 310 n n SD C5' SAH sing 311 n n C O SAH doub 312 n n C OXT SAH sing 313 n n OXT HXT SAH sing 314 n n C5' C4' SAH sing 315 n n C5' "H5'1" SAH sing 316 n n C5' "H5'2" SAH sing 317 n n C4' O4' SAH sing 318 n n C4' C3' SAH sing 319 n n C4' H4' SAH sing 320 n n O4' C1' SAH sing 321 n n C3' O3' SAH sing 322 n n C3' C2' SAH sing 323 n n C3' H3' SAH sing 324 n n O3' HO3' SAH sing 325 n n C2' O2' SAH sing 326 n n C2' C1' SAH sing 327 n n C2' H2' SAH sing 328 n n O2' HO2' SAH sing 329 n n C1' N9 SAH sing 330 n n C1' H1' SAH sing 331 n n N9 C8 SAH sing 332 n y N9 C4 SAH sing 333 n y C8 N7 SAH doub 334 n y C8 H8 SAH sing 335 n n N7 C5 SAH sing 336 n y C5 C6 SAH sing 337 n y C5 C4 SAH doub 338 n y C6 N6 SAH sing 339 n n C6 N1 SAH doub 340 n y N6 HN61 SAH sing 341 n n N6 HN62 SAH sing 342 n n N1 C2 SAH sing 343 n y C2 N3 SAH doub 344 n y C2 H2 SAH sing 345 n n N3 C4 SAH sing 346 n y # _atom_sites.entry_id 1N7J _atom_sites.fract_transf_matrix[1][1] 0.010555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 2002 2002 SAH SAH . D 3 IDI A 1 3003 3003 IDI IDI . E 2 SAH B 1 2003 2003 SAH SAH . F 3 IDI B 1 3002 3002 IDI IDI . G 4 HOH A 1 1002 1002 HOH HOH . G 4 HOH A 2 1003 1003 HOH HOH . G 4 HOH A 3 1004 1004 HOH HOH . G 4 HOH A 4 1005 1005 HOH HOH . G 4 HOH A 5 1006 1006 HOH HOH . G 4 HOH A 6 1007 1007 HOH HOH . G 4 HOH A 7 1008 1008 HOH HOH . G 4 HOH A 8 1011 1011 HOH HOH . G 4 HOH A 9 1012 1012 HOH HOH . G 4 HOH A 10 1013 1013 HOH HOH . G 4 HOH A 11 1014 1014 HOH HOH . G 4 HOH A 12 1015 1015 HOH HOH . G 4 HOH A 13 1022 1022 HOH HOH . G 4 HOH A 14 1027 1027 HOH HOH . G 4 HOH A 15 1028 1028 HOH HOH . G 4 HOH A 16 1030 1030 HOH HOH . G 4 HOH A 17 1032 1032 HOH HOH . G 4 HOH A 18 1037 1037 HOH HOH . G 4 HOH A 19 1038 1038 HOH HOH . G 4 HOH A 20 1039 1039 HOH HOH . G 4 HOH A 21 1046 1046 HOH HOH . G 4 HOH A 22 1048 1048 HOH HOH . G 4 HOH A 23 1050 1050 HOH HOH . G 4 HOH A 24 1052 1052 HOH HOH . G 4 HOH A 25 1053 1053 HOH HOH . H 4 HOH B 1 1001 1001 HOH HOH . H 4 HOH B 2 1009 1009 HOH HOH . H 4 HOH B 3 1010 1010 HOH HOH . H 4 HOH B 4 1016 1016 HOH HOH . H 4 HOH B 5 1017 1017 HOH HOH . H 4 HOH B 6 1018 1018 HOH HOH . H 4 HOH B 7 1019 1019 HOH HOH . H 4 HOH B 8 1020 1020 HOH HOH . H 4 HOH B 9 1021 1021 HOH HOH . H 4 HOH B 10 1023 1023 HOH HOH . H 4 HOH B 11 1024 1024 HOH HOH . H 4 HOH B 12 1025 1025 HOH HOH . H 4 HOH B 13 1026 1026 HOH HOH . H 4 HOH B 14 1029 1029 HOH HOH . H 4 HOH B 15 1031 1031 HOH HOH . H 4 HOH B 16 1033 1033 HOH HOH . H 4 HOH B 17 1034 1034 HOH HOH . H 4 HOH B 18 1035 1035 HOH HOH . H 4 HOH B 19 1036 1036 HOH HOH . H 4 HOH B 20 1040 1040 HOH HOH . H 4 HOH B 21 1041 1041 HOH HOH . H 4 HOH B 22 1042 1042 HOH HOH . H 4 HOH B 23 1043 1043 HOH HOH . H 4 HOH B 24 1044 1044 HOH HOH . H 4 HOH B 25 1045 1045 HOH HOH . H 4 HOH B 26 1047 1047 HOH HOH . H 4 HOH B 27 1049 1049 HOH HOH . H 4 HOH B 28 1051 1051 HOH HOH . H 4 HOH B 29 1054 1054 HOH HOH . H 4 HOH B 30 1055 1055 HOH HOH . H 4 HOH B 31 1056 1056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 26.769 52.953 18.046 1 63.57 ? N SAH 2002 A 1 HETATM 2 C CA SAH . . . C 2 28.071 52.292 18.022 1 63.21 ? CA SAH 2002 A 1 HETATM 3 C CB SAH . . . C 2 28.394 51.761 19.42 1 64.61 ? CB SAH 2002 A 1 HETATM 4 C CG SAH . . . C 2 29.859 51.549 19.712 1 66.01 ? CG SAH 2002 A 1 HETATM 5 S SD SAH . . . C 2 30.133 50.499 21.176 1 67.87 ? SD SAH 2002 A 1 HETATM 6 C C SAH . . . C 2 28.056 51.144 17.008 1 62.62 ? C SAH 2002 A 1 HETATM 7 O O SAH . . . C 2 26.952 50.656 16.686 1 61.97 ? O SAH 2002 A 1 HETATM 8 O OXT SAH . . . C 2 29.147 50.734 16.558 1 61.95 ? OXT SAH 2002 A 1 HETATM 9 C C5' SAH . . . C 2 29.648 51.572 22.585 1 70.16 ? C5' SAH 2002 A 1 HETATM 10 C C4' SAH . . . C 2 30.193 52.982 22.589 1 71.57 ? C4' SAH 2002 A 1 HETATM 11 O O4' SAH . . . C 2 29.794 53.691 23.796 1 72.24 ? O4' SAH 2002 A 1 HETATM 12 C C3' SAH . . . C 2 31.704 53.149 22.446 1 71.46 ? C3' SAH 2002 A 1 HETATM 13 O O3' SAH . . . C 2 32.004 54.015 21.36 1 71.41 ? O3' SAH 2002 A 1 HETATM 14 C C2' SAH . . . C 2 32.138 53.705 23.801 1 72.66 ? C2' SAH 2002 A 1 HETATM 15 O O2' SAH . . . C 2 33.245 54.582 23.726 1 73.88 ? O2' SAH 2002 A 1 HETATM 16 C C1' SAH . . . C 2 30.886 54.456 24.261 1 73.38 ? C1' SAH 2002 A 1 HETATM 17 N N9 SAH . . . C 2 30.776 54.615 25.719 1 74.06 ? N9 SAH 2002 A 1 HETATM 18 C C8 SAH . . . C 2 31.634 54.075 26.746 1 74.12 ? C8 SAH 2002 A 1 HETATM 19 N N7 SAH . . . C 2 31.28 54.435 27.957 1 74.34 ? N7 SAH 2002 A 1 HETATM 20 C C5 SAH . . . C 2 30.16 55.229 27.743 1 73.91 ? C5 SAH 2002 A 1 HETATM 21 C C6 SAH . . . C 2 29.36 55.905 28.693 1 73.97 ? C6 SAH 2002 A 1 HETATM 22 N N6 SAH . . . C 2 29.589 55.882 30.009 1 74.28 ? N6 SAH 2002 A 1 HETATM 23 N N1 SAH . . . C 2 28.3 56.622 28.221 1 74.04 ? N1 SAH 2002 A 1 HETATM 24 C C2 SAH . . . C 2 28.083 56.652 26.878 1 74.26 ? C2 SAH 2002 A 1 HETATM 25 N N3 SAH . . . C 2 28.79 56.051 25.888 1 73.74 ? N3 SAH 2002 A 1 HETATM 26 C C4 SAH . . . C 2 29.828 55.346 26.396 1 74 ? C4 SAH 2002 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #