data_1N7J # _model_server_result.job_id PyWGxJzzpKIUcAtvWYcknw _model_server_result.datetime_utc '2024-11-04 23:08:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2003}' # _entry.id 1N7J # _exptl.entry_id 1N7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N7J _cell.length_a 94.74 _cell.length_b 94.74 _cell.length_c 186.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 299 n n N HN1 SAH sing 300 n n N HN2 SAH sing 301 n n CA CB SAH sing 302 n n CA C SAH sing 303 n n CA HA SAH sing 304 n n CB CG SAH sing 305 n n CB HB1 SAH sing 306 n n CB HB2 SAH sing 307 n n CG SD SAH sing 308 n n CG HG1 SAH sing 309 n n CG HG2 SAH sing 310 n n SD C5' SAH sing 311 n n C O SAH doub 312 n n C OXT SAH sing 313 n n OXT HXT SAH sing 314 n n C5' C4' SAH sing 315 n n C5' "H5'1" SAH sing 316 n n C5' "H5'2" SAH sing 317 n n C4' O4' SAH sing 318 n n C4' C3' SAH sing 319 n n C4' H4' SAH sing 320 n n O4' C1' SAH sing 321 n n C3' O3' SAH sing 322 n n C3' C2' SAH sing 323 n n C3' H3' SAH sing 324 n n O3' HO3' SAH sing 325 n n C2' O2' SAH sing 326 n n C2' C1' SAH sing 327 n n C2' H2' SAH sing 328 n n O2' HO2' SAH sing 329 n n C1' N9 SAH sing 330 n n C1' H1' SAH sing 331 n n N9 C8 SAH sing 332 n y N9 C4 SAH sing 333 n y C8 N7 SAH doub 334 n y C8 H8 SAH sing 335 n n N7 C5 SAH sing 336 n y C5 C6 SAH sing 337 n y C5 C4 SAH doub 338 n y C6 N6 SAH sing 339 n n C6 N1 SAH doub 340 n y N6 HN61 SAH sing 341 n n N6 HN62 SAH sing 342 n n N1 C2 SAH sing 343 n y C2 N3 SAH doub 344 n y C2 H2 SAH sing 345 n n N3 C4 SAH sing 346 n y # _atom_sites.entry_id 1N7J _atom_sites.fract_transf_matrix[1][1] 0.010555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 2002 2002 SAH SAH . D 3 IDI A 1 3003 3003 IDI IDI . E 2 SAH B 1 2003 2003 SAH SAH . F 3 IDI B 1 3002 3002 IDI IDI . G 4 HOH A 1 1002 1002 HOH HOH . G 4 HOH A 2 1003 1003 HOH HOH . G 4 HOH A 3 1004 1004 HOH HOH . G 4 HOH A 4 1005 1005 HOH HOH . G 4 HOH A 5 1006 1006 HOH HOH . G 4 HOH A 6 1007 1007 HOH HOH . G 4 HOH A 7 1008 1008 HOH HOH . G 4 HOH A 8 1011 1011 HOH HOH . G 4 HOH A 9 1012 1012 HOH HOH . G 4 HOH A 10 1013 1013 HOH HOH . G 4 HOH A 11 1014 1014 HOH HOH . G 4 HOH A 12 1015 1015 HOH HOH . G 4 HOH A 13 1022 1022 HOH HOH . G 4 HOH A 14 1027 1027 HOH HOH . G 4 HOH A 15 1028 1028 HOH HOH . G 4 HOH A 16 1030 1030 HOH HOH . G 4 HOH A 17 1032 1032 HOH HOH . G 4 HOH A 18 1037 1037 HOH HOH . G 4 HOH A 19 1038 1038 HOH HOH . G 4 HOH A 20 1039 1039 HOH HOH . G 4 HOH A 21 1046 1046 HOH HOH . G 4 HOH A 22 1048 1048 HOH HOH . G 4 HOH A 23 1050 1050 HOH HOH . G 4 HOH A 24 1052 1052 HOH HOH . G 4 HOH A 25 1053 1053 HOH HOH . H 4 HOH B 1 1001 1001 HOH HOH . H 4 HOH B 2 1009 1009 HOH HOH . H 4 HOH B 3 1010 1010 HOH HOH . H 4 HOH B 4 1016 1016 HOH HOH . H 4 HOH B 5 1017 1017 HOH HOH . H 4 HOH B 6 1018 1018 HOH HOH . H 4 HOH B 7 1019 1019 HOH HOH . H 4 HOH B 8 1020 1020 HOH HOH . H 4 HOH B 9 1021 1021 HOH HOH . H 4 HOH B 10 1023 1023 HOH HOH . H 4 HOH B 11 1024 1024 HOH HOH . H 4 HOH B 12 1025 1025 HOH HOH . H 4 HOH B 13 1026 1026 HOH HOH . H 4 HOH B 14 1029 1029 HOH HOH . H 4 HOH B 15 1031 1031 HOH HOH . H 4 HOH B 16 1033 1033 HOH HOH . H 4 HOH B 17 1034 1034 HOH HOH . H 4 HOH B 18 1035 1035 HOH HOH . H 4 HOH B 19 1036 1036 HOH HOH . H 4 HOH B 20 1040 1040 HOH HOH . H 4 HOH B 21 1041 1041 HOH HOH . H 4 HOH B 22 1042 1042 HOH HOH . H 4 HOH B 23 1043 1043 HOH HOH . H 4 HOH B 24 1044 1044 HOH HOH . H 4 HOH B 25 1045 1045 HOH HOH . H 4 HOH B 26 1047 1047 HOH HOH . H 4 HOH B 27 1049 1049 HOH HOH . H 4 HOH B 28 1051 1051 HOH HOH . H 4 HOH B 29 1054 1054 HOH HOH . H 4 HOH B 30 1055 1055 HOH HOH . H 4 HOH B 31 1056 1056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 4.31 18.89 19.768 1 42.77 ? N SAH 2003 B 1 HETATM 2 C CA SAH . . . E 2 5.679 18.474 20.072 1 42.36 ? CA SAH 2003 B 1 HETATM 3 C CB SAH . . . E 2 6.507 18.425 18.782 1 43.73 ? CB SAH 2003 B 1 HETATM 4 C CG SAH . . . E 2 6.684 17.055 18.192 1 42.37 ? CG SAH 2003 B 1 HETATM 5 S SD SAH . . . E 2 7.961 17.053 16.895 1 42 ? SD SAH 2003 B 1 HETATM 6 C C SAH . . . E 2 6.374 19.389 21.094 1 40.99 ? C SAH 2003 B 1 HETATM 7 O O SAH . . . E 2 5.861 20.5 21.373 1 38.62 ? O SAH 2003 B 1 HETATM 8 O OXT SAH . . . E 2 7.447 18.977 21.59 1 39.66 ? OXT SAH 2003 B 1 HETATM 9 C C5' SAH . . . E 2 6.991 17.17 15.348 1 39.77 ? C5' SAH 2003 B 1 HETATM 10 C C4' SAH . . . E 2 5.833 16.205 15.264 1 40.55 ? C4' SAH 2003 B 1 HETATM 11 O O4' SAH . . . E 2 5.086 16.372 14.034 1 41.86 ? O4' SAH 2003 B 1 HETATM 12 C C3' SAH . . . E 2 6.112 14.711 15.417 1 40.63 ? C3' SAH 2003 B 1 HETATM 13 O O3' SAH . . . E 2 5.422 14.193 16.548 1 41.33 ? O3' SAH 2003 B 1 HETATM 14 C C2' SAH . . . E 2 5.618 14.106 14.101 1 41.6 ? C2' SAH 2003 B 1 HETATM 15 O O2' SAH . . . E 2 5.031 12.827 14.262 1 40.55 ? O2' SAH 2003 B 1 HETATM 16 C C1' SAH . . . E 2 4.568 15.121 13.647 1 42.12 ? C1' SAH 2003 B 1 HETATM 17 N N9 SAH . . . E 2 4.319 15.136 12.2 1 43.61 ? N9 SAH 2003 B 1 HETATM 18 C C8 SAH . . . E 2 5.055 14.474 11.163 1 44.49 ? C8 SAH 2003 B 1 HETATM 19 N N7 SAH . . . E 2 4.538 14.648 9.967 1 45.7 ? N7 SAH 2003 B 1 HETATM 20 C C5 SAH . . . E 2 3.436 15.455 10.21 1 45.76 ? C5 SAH 2003 B 1 HETATM 21 C C6 SAH . . . E 2 2.478 15.943 9.294 1 45.68 ? C6 SAH 2003 B 1 HETATM 22 N N6 SAH . . . E 2 2.504 15.682 7.982 1 45.85 ? N6 SAH 2003 B 1 HETATM 23 N N1 SAH . . . E 2 1.471 16.715 9.795 1 44.05 ? N1 SAH 2003 B 1 HETATM 24 C C2 SAH . . . E 2 1.444 16.958 11.128 1 43.09 ? C2 SAH 2003 B 1 HETATM 25 N N3 SAH . . . E 2 2.301 16.536 12.086 1 44.39 ? N3 SAH 2003 B 1 HETATM 26 C C4 SAH . . . E 2 3.286 15.777 11.554 1 44.73 ? C4 SAH 2003 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #