data_1N8U # _model_server_result.job_id emukWvGvXbdbno6Zg3JNSA _model_server_result.datetime_utc '2024-11-05 00:37:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":412}' # _entry.id 1N8U # _exptl.entry_id 1N8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 265.23 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BROMO-DODECANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.59 _cell.angle_gamma 90 _cell.entry_id 1N8U _cell.length_a 61.529 _cell.length_b 54.579 _cell.length_c 33.226 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 55 A CYS 55 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C12 H25 Br O' _chem_comp.formula_weight 265.23 _chem_comp.id BDD _chem_comp.mon_nstd_flag . _chem_comp.name BROMO-DODECANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 BDD sing 70 n n O1 HO1 BDD sing 71 n n C1 C2 BDD sing 72 n n C1 H11 BDD sing 73 n n C1 H12 BDD sing 74 n n C2 C3 BDD sing 75 n n C2 H21 BDD sing 76 n n C2 H22 BDD sing 77 n n C3 C4 BDD sing 78 n n C3 H31 BDD sing 79 n n C3 H32 BDD sing 80 n n C4 C5 BDD sing 81 n n C4 H41 BDD sing 82 n n C4 H42 BDD sing 83 n n C5 C6 BDD sing 84 n n C5 H51 BDD sing 85 n n C5 H52 BDD sing 86 n n C6 C7 BDD sing 87 n n C6 H61 BDD sing 88 n n C6 H62 BDD sing 89 n n C7 C8 BDD sing 90 n n C7 H71 BDD sing 91 n n C7 H72 BDD sing 92 n n C8 C9 BDD sing 93 n n C8 H81 BDD sing 94 n n C8 H82 BDD sing 95 n n C9 C10 BDD sing 96 n n C9 H91 BDD sing 97 n n C9 H92 BDD sing 98 n n C10 C11 BDD sing 99 n n C10 H101 BDD sing 100 n n C10 H102 BDD sing 101 n n C11 C12 BDD sing 102 n n C11 H111 BDD sing 103 n n C11 H112 BDD sing 104 n n C12 BR BDD sing 105 n n C12 H121 BDD sing 106 n n C12 H122 BDD sing 107 n n # _atom_sites.entry_id 1N8U _atom_sites.fract_transf_matrix[1][1] 0.016252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDD A 1 411 411 BDD BRD . C 2 BDD A 1 412 412 BDD BRD . D 2 BDD A 1 413 413 BDD BRD . E 3 HOH A 1 414 1 HOH HOH . E 3 HOH A 2 415 3 HOH HOH . E 3 HOH A 3 416 4 HOH HOH . E 3 HOH A 4 417 5 HOH HOH . E 3 HOH A 5 418 6 HOH HOH . E 3 HOH A 6 419 7 HOH HOH . E 3 HOH A 7 420 8 HOH HOH . E 3 HOH A 8 421 9 HOH HOH . E 3 HOH A 9 422 10 HOH HOH . E 3 HOH A 10 423 11 HOH HOH . E 3 HOH A 11 424 12 HOH HOH . E 3 HOH A 12 425 13 HOH HOH . E 3 HOH A 13 426 14 HOH HOH . E 3 HOH A 14 427 15 HOH HOH . E 3 HOH A 15 428 16 HOH HOH . E 3 HOH A 16 429 17 HOH HOH . E 3 HOH A 17 430 18 HOH HOH . E 3 HOH A 18 431 19 HOH HOH . E 3 HOH A 19 432 20 HOH HOH . E 3 HOH A 20 433 21 HOH HOH . E 3 HOH A 21 434 22 HOH HOH . E 3 HOH A 22 435 23 HOH HOH . E 3 HOH A 23 436 24 HOH HOH . E 3 HOH A 24 437 26 HOH HOH . E 3 HOH A 25 438 27 HOH HOH . E 3 HOH A 26 439 28 HOH HOH . E 3 HOH A 27 440 29 HOH HOH . E 3 HOH A 28 441 30 HOH HOH . E 3 HOH A 29 442 31 HOH HOH . E 3 HOH A 30 443 32 HOH HOH . E 3 HOH A 31 444 33 HOH HOH . E 3 HOH A 32 445 34 HOH HOH . E 3 HOH A 33 446 35 HOH HOH . E 3 HOH A 34 447 36 HOH HOH . E 3 HOH A 35 448 37 HOH HOH . E 3 HOH A 36 449 38 HOH HOH . E 3 HOH A 37 450 39 HOH HOH . E 3 HOH A 38 451 40 HOH HOH . E 3 HOH A 39 452 41 HOH HOH . E 3 HOH A 40 453 42 HOH HOH . E 3 HOH A 41 454 43 HOH HOH . E 3 HOH A 42 455 44 HOH HOH . E 3 HOH A 43 456 45 HOH HOH . E 3 HOH A 44 457 46 HOH HOH . E 3 HOH A 45 458 47 HOH HOH . E 3 HOH A 46 459 48 HOH HOH . E 3 HOH A 47 460 49 HOH HOH . E 3 HOH A 48 461 50 HOH HOH . E 3 HOH A 49 462 51 HOH HOH . E 3 HOH A 50 463 52 HOH HOH . E 3 HOH A 51 464 53 HOH HOH . E 3 HOH A 52 465 54 HOH HOH . E 3 HOH A 53 466 55 HOH HOH . E 3 HOH A 54 467 56 HOH HOH . E 3 HOH A 55 468 57 HOH HOH . E 3 HOH A 56 469 58 HOH HOH . E 3 HOH A 57 470 59 HOH HOH . E 3 HOH A 58 471 60 HOH HOH . E 3 HOH A 59 472 61 HOH HOH . E 3 HOH A 60 473 62 HOH HOH . E 3 HOH A 61 474 63 HOH HOH . E 3 HOH A 62 475 64 HOH HOH . E 3 HOH A 63 476 65 HOH HOH . E 3 HOH A 64 477 66 HOH HOH . E 3 HOH A 65 478 67 HOH HOH . E 3 HOH A 66 479 68 HOH HOH . E 3 HOH A 67 480 69 HOH HOH . E 3 HOH A 68 481 70 HOH HOH . E 3 HOH A 69 482 71 HOH HOH . E 3 HOH A 70 483 72 HOH HOH . E 3 HOH A 71 484 73 HOH HOH . E 3 HOH A 72 485 74 HOH HOH . E 3 HOH A 73 486 75 HOH HOH . E 3 HOH A 74 487 77 HOH HOH . E 3 HOH A 75 488 78 HOH HOH . E 3 HOH A 76 489 79 HOH HOH . E 3 HOH A 77 490 80 HOH HOH . E 3 HOH A 78 491 81 HOH HOH . E 3 HOH A 79 492 82 HOH HOH . E 3 HOH A 80 493 83 HOH HOH . E 3 HOH A 81 494 84 HOH HOH . E 3 HOH A 82 495 85 HOH HOH . E 3 HOH A 83 496 86 HOH HOH . E 3 HOH A 84 497 87 HOH HOH . E 3 HOH A 85 498 88 HOH HOH . E 3 HOH A 86 499 89 HOH HOH . E 3 HOH A 87 500 90 HOH HOH . E 3 HOH A 88 501 91 HOH HOH . E 3 HOH A 89 502 92 HOH HOH . E 3 HOH A 90 503 93 HOH HOH . E 3 HOH A 91 504 94 HOH HOH . E 3 HOH A 92 505 95 HOH HOH . E 3 HOH A 93 506 96 HOH HOH . E 3 HOH A 94 507 97 HOH HOH . E 3 HOH A 95 508 98 HOH HOH . E 3 HOH A 96 509 100 HOH HOH . E 3 HOH A 97 510 101 HOH HOH . E 3 HOH A 98 511 102 HOH HOH . E 3 HOH A 99 512 103 HOH HOH . E 3 HOH A 100 513 104 HOH HOH . E 3 HOH A 101 514 105 HOH HOH . E 3 HOH A 102 515 106 HOH HOH . E 3 HOH A 103 516 107 HOH HOH . E 3 HOH A 104 517 108 HOH HOH . E 3 HOH A 105 518 109 HOH HOH . E 3 HOH A 106 519 110 HOH HOH . E 3 HOH A 107 520 112 HOH HOH . E 3 HOH A 108 521 113 HOH HOH . E 3 HOH A 109 522 115 HOH HOH . E 3 HOH A 110 523 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 BDD . . . C 2 4.541 1.866 2.983 1 36.45 ? O1 BDD 412 A 1 HETATM 2 C C1 BDD . . . C 2 5.646 2.098 2.122 1 34.5 ? C1 BDD 412 A 1 HETATM 3 C C2 BDD . . . C 2 6.921 2.194 2.952 1 33.99 ? C2 BDD 412 A 1 HETATM 4 C C3 BDD . . . C 2 7.981 1.228 2.488 1 33.79 ? C3 BDD 412 A 1 HETATM 5 C C4 BDD . . . C 2 9.226 1.976 2.092 1 32.85 ? C4 BDD 412 A 1 HETATM 6 C C5 BDD . . . C 2 9.251 2.16 0.598 1 32.57 ? C5 BDD 412 A 1 HETATM 7 C C6 BDD . . . C 2 10.701 2.236 0.186 1 31.53 ? C6 BDD 412 A 1 HETATM 8 C C7 BDD . . . C 2 10.81 3.188 -0.96 1 30.89 ? C7 BDD 412 A 1 HETATM 9 C C8 BDD . . . C 2 11.465 2.548 -2.133 1 28.88 ? C8 BDD 412 A 1 HETATM 10 C C9 BDD . . . C 2 11.669 3.653 -3.121 1 26.8 ? C9 BDD 412 A 1 HETATM 11 C C10 BDD . . . C 2 12.731 3.284 -4.127 1 28.59 ? C10 BDD 412 A 1 HETATM 12 C C11 BDD . . . C 2 13.873 4.295 -4.068 1 25.54 ? C11 BDD 412 A 1 HETATM 13 C C12 BDD . . . C 2 14.747 4.1 -5.297 1 25.42 ? C12 BDD 412 A 1 HETATM 14 BR BR BDD . . . C 2 16.161 3.533 -4.84 1 12.85 ? BR BDD 412 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #