data_1N8Z # _model_server_result.job_id adsPCdIByhl-03QOkXMXMw _model_server_result.datetime_utc '2024-11-22 12:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":766}' # _entry.id 1N8Z # _exptl.entry_id 1N8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N8Z _cell.length_a 66.17 _cell.length_b 109.77 _cell.length_c 175.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 147 B CYS 147 1_555 B SG CYS 203 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 C SG CYS 4 C CYS 4 1_555 C SG CYS 31 C CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 140 C CYS 140 1_555 C SG CYS 170 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 C SG CYS 173 C CYS 173 1_555 C SG CYS 182 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf8 C SG CYS 177 C CYS 177 1_555 C SG CYS 190 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 C SG CYS 198 C CYS 198 1_555 C SG CYS 205 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf10 C SG CYS 202 C CYS 202 1_555 C SG CYS 213 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf11 C SG CYS 214 C CYS 214 1_555 C SG CYS 222 C CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 C SG CYS 218 C CYS 218 1_555 C SG CYS 230 C CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 233 C CYS 233 1_555 C SG CYS 242 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf14 C SG CYS 246 C CYS 246 1_555 C SG CYS 273 C CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf15 C SG CYS 277 C CYS 277 1_555 C SG CYS 289 C CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 C SG CYS 293 C CYS 293 1_555 C SG CYS 309 C CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf17 C SG CYS 312 C CYS 312 1_555 C SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf18 C SG CYS 320 C CYS 320 1_555 C SG CYS 345 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf19 C SG CYS 453 C CYS 453 1_555 C SG CYS 482 C CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 C SG CYS 489 C CYS 489 1_555 C SG CYS 498 C CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 C SG CYS 493 C CYS 493 1_555 C SG CYS 506 C CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf22 C SG CYS 509 C CYS 509 1_555 C SG CYS 518 C CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf23 C SG CYS 522 C CYS 522 1_555 C SG CYS 538 C CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf24 C SG CYS 541 C CYS 541 1_555 C SG CYS 554 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf25 C SG CYS 545 C CYS 545 1_555 C SG CYS 562 C CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf26 C SG CYS 565 C CYS 565 1_555 C SG CYS 574 C CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf27 C SG CYS 578 C CYS 578 1_555 C SG CYS 601 C CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? covale ? covale1 C ND2 ASN 165 C ASN 165 1_555 D C1 NAG . C NAG 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 C ND2 ASN 237 C ASN 237 1_555 E C1 NAG . C NAG 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1N8Z _atom_sites.fract_transf_matrix[1][1] 0.015113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG C 1 766 165 NAG NAG . E 4 NAG C 1 738 237 NAG NAG . F 5 SO4 C 1 1001 1001 SO4 SO4 . G 6 HOH A 1 215 26 HOH HOH . G 6 HOH A 2 216 32 HOH HOH . G 6 HOH A 3 217 34 HOH HOH . G 6 HOH A 4 218 35 HOH HOH . G 6 HOH A 5 219 44 HOH HOH . G 6 HOH A 6 220 47 HOH HOH . G 6 HOH A 7 221 51 HOH HOH . G 6 HOH A 8 222 56 HOH HOH . G 6 HOH A 9 223 57 HOH HOH . G 6 HOH A 10 224 58 HOH HOH . G 6 HOH A 11 225 71 HOH HOH . G 6 HOH A 12 226 73 HOH HOH . G 6 HOH A 13 227 74 HOH HOH . G 6 HOH A 14 228 75 HOH HOH . G 6 HOH A 15 229 82 HOH HOH . G 6 HOH A 16 230 83 HOH HOH . G 6 HOH A 17 231 84 HOH HOH . G 6 HOH A 18 232 85 HOH HOH . G 6 HOH A 19 233 86 HOH HOH . H 6 HOH B 1 221 4 HOH HOH . H 6 HOH B 2 222 10 HOH HOH . H 6 HOH B 3 223 19 HOH HOH . H 6 HOH B 4 224 27 HOH HOH . H 6 HOH B 5 225 33 HOH HOH . H 6 HOH B 6 226 36 HOH HOH . H 6 HOH B 7 227 38 HOH HOH . H 6 HOH B 8 228 45 HOH HOH . H 6 HOH B 9 229 52 HOH HOH . H 6 HOH B 10 230 53 HOH HOH . H 6 HOH B 11 231 69 HOH HOH . H 6 HOH B 12 232 70 HOH HOH . H 6 HOH B 13 233 88 HOH HOH . I 6 HOH C 1 1002 41 HOH HOH . I 6 HOH C 2 1003 1 HOH HOH . I 6 HOH C 3 1004 2 HOH HOH . I 6 HOH C 4 1005 3 HOH HOH . I 6 HOH C 5 1006 6 HOH HOH . I 6 HOH C 6 1007 7 HOH HOH . I 6 HOH C 7 1008 8 HOH HOH . I 6 HOH C 8 1009 9 HOH HOH . I 6 HOH C 9 1010 11 HOH HOH . I 6 HOH C 10 1011 13 HOH HOH . I 6 HOH C 11 1012 14 HOH HOH . I 6 HOH C 12 1013 15 HOH HOH . I 6 HOH C 13 1014 16 HOH HOH . I 6 HOH C 14 1015 17 HOH HOH . I 6 HOH C 15 1016 20 HOH HOH . I 6 HOH C 16 1017 22 HOH HOH . I 6 HOH C 17 1018 23 HOH HOH . I 6 HOH C 18 1019 24 HOH HOH . I 6 HOH C 19 1020 25 HOH HOH . I 6 HOH C 20 1021 28 HOH HOH . I 6 HOH C 21 1022 29 HOH HOH . I 6 HOH C 22 1023 30 HOH HOH . I 6 HOH C 23 1024 31 HOH HOH . I 6 HOH C 24 1025 37 HOH HOH . I 6 HOH C 25 1026 39 HOH HOH . I 6 HOH C 26 1027 46 HOH HOH . I 6 HOH C 27 1028 48 HOH HOH . I 6 HOH C 28 1029 49 HOH HOH . I 6 HOH C 29 1030 50 HOH HOH . I 6 HOH C 30 1031 55 HOH HOH . I 6 HOH C 31 1032 59 HOH HOH . I 6 HOH C 32 1033 60 HOH HOH . I 6 HOH C 33 1034 61 HOH HOH . I 6 HOH C 34 1035 62 HOH HOH . I 6 HOH C 35 1036 63 HOH HOH . I 6 HOH C 36 1037 64 HOH HOH . I 6 HOH C 37 1038 65 HOH HOH . I 6 HOH C 38 1039 66 HOH HOH . I 6 HOH C 39 1040 67 HOH HOH . I 6 HOH C 40 1041 68 HOH HOH . I 6 HOH C 41 1042 72 HOH HOH . I 6 HOH C 42 1043 76 HOH HOH . I 6 HOH C 43 1044 77 HOH HOH . I 6 HOH C 44 1045 78 HOH HOH . I 6 HOH C 45 1046 80 HOH HOH . I 6 HOH C 46 1047 81 HOH HOH . I 6 HOH C 47 1048 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -28.886 90.757 158.857 1 48.95 ? C1 NAG 766 C 1 HETATM 2 C C2 NAG . . . D 4 -29.56 92.088 159.238 1 54.02 ? C2 NAG 766 C 1 HETATM 3 C C3 NAG . . . D 4 -28.564 93.196 159.593 1 55.27 ? C3 NAG 766 C 1 HETATM 4 C C4 NAG . . . D 4 -27.515 92.618 160.561 1 55.75 ? C4 NAG 766 C 1 HETATM 5 C C5 NAG . . . D 4 -26.885 91.398 159.842 1 57.25 ? C5 NAG 766 C 1 HETATM 6 C C6 NAG . . . D 4 -25.479 90.895 160.269 1 58.86 ? C6 NAG 766 C 1 HETATM 7 C C7 NAG . . . D 4 -31.586 92.693 158.177 1 56.43 ? C7 NAG 766 C 1 HETATM 8 C C8 NAG . . . D 4 -32.456 91.559 157.696 1 54.14 ? C8 NAG 766 C 1 HETATM 9 N N2 NAG . . . D 4 -30.285 92.55 158.088 1 54.78 ? N2 NAG 766 C 1 HETATM 10 O O3 NAG . . . D 4 -29.241 94.396 159.987 1 55.4 ? O3 NAG 766 C 1 HETATM 11 O O4 NAG . . . D 4 -26.553 93.585 160.887 1 57.53 ? O4 NAG 766 C 1 HETATM 12 O O5 NAG . . . D 4 -27.884 90.372 159.801 1 55.28 ? O5 NAG 766 C 1 HETATM 13 O O6 NAG . . . D 4 -25.574 89.744 161.078 1 59.23 ? O6 NAG 766 C 1 HETATM 14 O O7 NAG . . . D 4 -32.03 93.72 158.658 1 58.65 ? O7 NAG 766 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #