data_1N9A # _model_server_result.job_id AZrRScd9jBjfLZqB52Hguw _model_server_result.datetime_utc '2024-10-12 10:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1N9A # _exptl.entry_id 1N9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.526 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[3-(4-CYANO-BENZYL)-3H-IMIDAZOL-4-YL]-ACETYL}-5-NAPHTHALEN-1-YL-1,2,3,6-TETRAHYDRO-PYRIDINE-4-CARBONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N9A _cell.length_a 170.503 _cell.length_b 170.503 _cell.length_c 69.272 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 B OD2 ASP 276 B ASP 297 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc3 B SG CYS 278 B CYS 299 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 B NE2 HIS 341 B HIS 362 1_555 C ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C29 H23 N5 O' _chem_comp.formula_weight 457.526 _chem_comp.id FTI _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[3-(4-CYANO-BENZYL)-3H-IMIDAZOL-4-YL]-ACETYL}-5-NAPHTHALEN-1-YL-1,2,3,6-TETRAHYDRO-PYRIDINE-4-CARBONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FTI sing 83 n n C1 C28 FTI sing 84 n n C1 HC1A FTI sing 85 n n C1 HC12 FTI sing 86 n n C2 N1 FTI sing 87 n n C2 HC2A FTI sing 88 n n C2 HC22 FTI sing 89 n n N1 C3 FTI sing 90 n n N1 C12 FTI sing 91 n n C3 C4 FTI sing 92 n n C3 HC31 FTI sing 93 n n C3 HC32 FTI sing 94 n n C4 C5 FTI sing 95 n n C4 C28 FTI doub 96 n n C5 C6 FTI doub 97 n y C5 C10 FTI sing 98 n y C6 C7 FTI sing 99 n y C6 C13 FTI sing 100 n y C7 C8 FTI doub 101 n y C7 C11 FTI sing 102 n y C8 C9 FTI sing 103 n y C8 HC8 FTI sing 104 n n C9 C10 FTI doub 105 n y C9 HC9 FTI sing 106 n n C10 HC10 FTI sing 107 n n C11 C14 FTI doub 108 n y C11 HC11 FTI sing 109 n n C12 C20 FTI sing 110 n n C12 O1 FTI doub 111 n n C13 C15 FTI doub 112 n y C13 HC13 FTI sing 113 n n C14 C15 FTI sing 114 n y C14 HC14 FTI sing 115 n n C15 HC15 FTI sing 116 n n C16 N3 FTI sing 117 n n C16 C22 FTI sing 118 n n C16 H161 FTI sing 119 n n C16 H162 FTI sing 120 n n N2 C17 FTI doub 121 n y N2 C19 FTI sing 122 n y C17 N3 FTI sing 123 n y C17 HC17 FTI sing 124 n n N3 C18 FTI sing 125 n y C18 C19 FTI doub 126 n y C18 C20 FTI sing 127 n n C19 HC19 FTI sing 128 n n C20 H201 FTI sing 129 n n C20 H202 FTI sing 130 n n C21 C22 FTI doub 131 n y C21 C26 FTI sing 132 n y C21 HC21 FTI sing 133 n n C22 C23 FTI sing 134 n y C23 C24 FTI doub 135 n y C23 HC23 FTI sing 136 n n C24 C25 FTI sing 137 n y C24 HC24 FTI sing 138 n n C25 C26 FTI doub 139 n y C25 C27 FTI sing 140 n n C26 HC26 FTI sing 141 n n C27 N4 FTI trip 142 n n C28 C29 FTI sing 143 n n C29 N5 FTI trip 144 n n # _atom_sites.entry_id 1N9A _atom_sites.fract_transf_matrix[1][1] 0.005865 _atom_sites.fract_transf_matrix[1][2] 0.003386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 500 500 ZN ZNK . D 4 HFP B 1 501 501 HFP HFP . E 5 FTI B 1 1 1 FTI FT3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FTI . . . E 5 48.524 51.515 -2.638 1 30 ? C1 FTI 1 B 1 HETATM 2 C C2 FTI . . . E 5 48.148 50.216 -1.938 1 30 ? C2 FTI 1 B 1 HETATM 3 N N1 FTI . . . E 5 48.839 49.94 -0.597 1 30 ? N1 FTI 1 B 1 HETATM 4 C C3 FTI . . . E 5 49.684 50.951 0.05 1 30 ? C3 FTI 1 B 1 HETATM 5 C C4 FTI . . . E 5 50.294 51.945 -0.914 1 30 ? C4 FTI 1 B 1 HETATM 6 C C5 FTI . . . E 5 51.549 52.559 -0.483 1 30 ? C5 FTI 1 B 1 HETATM 7 C C6 FTI . . . E 5 52.771 51.879 -0.545 1 30 ? C6 FTI 1 B 1 HETATM 8 C C7 FTI . . . E 5 54.028 52.521 -0.107 1 30 ? C7 FTI 1 B 1 HETATM 9 C C8 FTI . . . E 5 53.992 53.813 0.369 1 30 ? C8 FTI 1 B 1 HETATM 10 C C9 FTI . . . E 5 52.731 54.504 0.457 1 30 ? C9 FTI 1 B 1 HETATM 11 C C10 FTI . . . E 5 51.49 53.925 0.042 1 30 ? C10 FTI 1 B 1 HETATM 12 C C11 FTI . . . E 5 55.274 51.846 -0.19 1 30 ? C11 FTI 1 B 1 HETATM 13 C C12 FTI . . . E 5 48.6 48.826 0.163 1 30 ? C12 FTI 1 B 1 HETATM 14 C C13 FTI . . . E 5 52.809 50.513 -1.03 1 30 ? C13 FTI 1 B 1 HETATM 15 C C14 FTI . . . E 5 55.279 50.517 -0.658 1 30 ? C14 FTI 1 B 1 HETATM 16 C C15 FTI . . . E 5 54.053 49.862 -1.083 1 30 ? C15 FTI 1 B 1 HETATM 17 C C16 FTI . . . E 5 51.241 46.156 0.501 1 30 ? C16 FTI 1 B 1 HETATM 18 N N2 FTI . . . E 5 50.704 46.035 -3.126 1 30 ? N2 FTI 1 B 1 HETATM 19 C C17 FTI . . . E 5 51.421 45.886 -2.005 1 30 ? C17 FTI 1 B 1 HETATM 20 N N3 FTI . . . E 5 50.783 46.316 -0.888 1 30 ? N3 FTI 1 B 1 HETATM 21 C C18 FTI . . . E 5 49.455 46.832 -1.349 1 30 ? C18 FTI 1 B 1 HETATM 22 C C19 FTI . . . E 5 49.432 46.651 -2.694 1 30 ? C19 FTI 1 B 1 HETATM 23 C C20 FTI . . . E 5 48.312 47.409 -0.519 1 30 ? C20 FTI 1 B 1 HETATM 24 C C21 FTI . . . E 5 51.535 48.128 1.996 1 30 ? C21 FTI 1 B 1 HETATM 25 C C22 FTI . . . E 5 52.097 47.196 1.107 1 30 ? C22 FTI 1 B 1 HETATM 26 C C23 FTI . . . E 5 53.455 47.21 0.843 1 30 ? C23 FTI 1 B 1 HETATM 27 C C24 FTI . . . E 5 54.312 48.158 1.481 1 30 ? C24 FTI 1 B 1 HETATM 28 C C25 FTI . . . E 5 53.764 49.12 2.37 1 30 ? C25 FTI 1 B 1 HETATM 29 C C26 FTI . . . E 5 52.354 49.11 2.647 1 30 ? C26 FTI 1 B 1 HETATM 30 C C27 FTI . . . E 5 54.613 50.11 2.97 1 30 ? C27 FTI 1 B 1 HETATM 31 N N4 FTI . . . E 5 55.266 50.951 3.418 1 30 ? N4 FTI 1 B 1 HETATM 32 C C28 FTI . . . E 5 49.742 52.208 -2.17 1 30 ? C28 FTI 1 B 1 HETATM 33 O O1 FTI . . . E 5 48.563 48.869 1.403 1 30 ? O1 FTI 1 B 1 HETATM 34 C C29 FTI . . . E 5 50.329 53.124 -3.116 1 30 ? C29 FTI 1 B 1 HETATM 35 N N5 FTI . . . E 5 50.778 53.97 -3.757 1 30 ? N5 FTI 1 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #