data_1N9F # _model_server_result.job_id HXvyrtJGimomaMhDxI4dMA _model_server_result.datetime_utc '2024-10-10 17:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 1N9F # _exptl.entry_id 1N9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N9F _cell.length_a 90.542 _cell.length_b 90.542 _cell.length_c 45.243 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 D FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 D FE HEM . A HEM 200 1_555 B O OH . A OH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1N9F _atom_sites.fract_transf_matrix[1][1] 0.011045 _atom_sites.fract_transf_matrix[1][2] 0.006377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OH A 1 500 40 OH WAT . C 3 SO4 A 1 201 201 SO4 SUL . D 4 HEM A 1 200 200 HEM HEM . E 5 HOH A 1 501 1 HOH WAT . E 5 HOH A 2 502 2 HOH WAT . E 5 HOH A 3 503 3 HOH WAT . E 5 HOH A 4 504 4 HOH WAT . E 5 HOH A 5 505 5 HOH WAT . E 5 HOH A 6 506 6 HOH WAT . E 5 HOH A 7 507 7 HOH WAT . E 5 HOH A 8 508 8 HOH WAT . E 5 HOH A 9 509 9 HOH WAT . E 5 HOH A 10 510 10 HOH WAT . E 5 HOH A 11 511 11 HOH WAT . E 5 HOH A 12 512 12 HOH WAT . E 5 HOH A 13 513 13 HOH WAT . E 5 HOH A 14 514 14 HOH WAT . E 5 HOH A 15 515 15 HOH WAT . E 5 HOH A 16 516 16 HOH WAT . E 5 HOH A 17 517 17 HOH WAT . E 5 HOH A 18 518 18 HOH WAT . E 5 HOH A 19 519 19 HOH WAT . E 5 HOH A 20 520 20 HOH WAT . E 5 HOH A 21 521 21 HOH WAT . E 5 HOH A 22 522 22 HOH WAT . E 5 HOH A 23 523 23 HOH WAT . E 5 HOH A 24 524 24 HOH WAT . E 5 HOH A 25 525 25 HOH WAT . E 5 HOH A 26 526 26 HOH WAT . E 5 HOH A 27 527 27 HOH WAT . E 5 HOH A 28 528 28 HOH WAT . E 5 HOH A 29 529 29 HOH WAT . E 5 HOH A 30 530 30 HOH WAT . E 5 HOH A 31 531 31 HOH WAT . E 5 HOH A 32 532 32 HOH WAT . E 5 HOH A 33 533 33 HOH WAT . E 5 HOH A 34 534 34 HOH WAT . E 5 HOH A 35 535 35 HOH WAT . E 5 HOH A 36 536 36 HOH WAT . E 5 HOH A 37 537 38 HOH WAT . E 5 HOH A 38 538 39 HOH WAT . E 5 HOH A 39 539 41 HOH WAT . E 5 HOH A 40 540 42 HOH WAT . E 5 HOH A 41 541 43 HOH WAT . E 5 HOH A 42 542 44 HOH WAT . E 5 HOH A 43 543 45 HOH WAT . E 5 HOH A 44 544 46 HOH WAT . E 5 HOH A 45 545 47 HOH WAT . E 5 HOH A 46 546 48 HOH WAT . E 5 HOH A 47 547 49 HOH WAT . E 5 HOH A 48 548 50 HOH WAT . E 5 HOH A 49 549 51 HOH WAT . E 5 HOH A 50 550 52 HOH WAT . E 5 HOH A 51 551 53 HOH WAT . E 5 HOH A 52 552 54 HOH WAT . E 5 HOH A 53 553 55 HOH WAT . E 5 HOH A 54 554 56 HOH WAT . E 5 HOH A 55 555 57 HOH WAT . E 5 HOH A 56 556 58 HOH WAT . E 5 HOH A 57 557 59 HOH WAT . E 5 HOH A 58 558 60 HOH WAT . E 5 HOH A 59 559 61 HOH WAT . E 5 HOH A 60 560 62 HOH WAT . E 5 HOH A 61 561 63 HOH WAT . E 5 HOH A 62 562 64 HOH WAT . E 5 HOH A 63 563 65 HOH WAT . E 5 HOH A 64 564 66 HOH WAT . E 5 HOH A 65 565 67 HOH WAT . E 5 HOH A 66 566 68 HOH WAT . E 5 HOH A 67 567 69 HOH WAT . E 5 HOH A 68 568 70 HOH WAT . E 5 HOH A 69 569 71 HOH WAT . E 5 HOH A 70 570 72 HOH WAT . E 5 HOH A 71 571 73 HOH WAT . E 5 HOH A 72 572 74 HOH WAT . E 5 HOH A 73 573 75 HOH WAT . E 5 HOH A 74 574 76 HOH WAT . E 5 HOH A 75 575 77 HOH WAT . E 5 HOH A 76 576 78 HOH WAT . E 5 HOH A 77 577 79 HOH WAT . E 5 HOH A 78 578 80 HOH WAT . E 5 HOH A 79 579 81 HOH WAT . E 5 HOH A 80 580 82 HOH WAT . E 5 HOH A 81 581 83 HOH WAT . E 5 HOH A 82 582 84 HOH WAT . E 5 HOH A 83 583 85 HOH WAT . E 5 HOH A 84 584 86 HOH WAT . E 5 HOH A 85 585 87 HOH WAT . E 5 HOH A 86 586 88 HOH WAT . E 5 HOH A 87 587 89 HOH WAT . E 5 HOH A 88 588 91 HOH WAT . E 5 HOH A 89 589 92 HOH WAT . E 5 HOH A 90 590 93 HOH WAT . E 5 HOH A 91 591 94 HOH WAT . E 5 HOH A 92 592 95 HOH WAT . E 5 HOH A 93 593 96 HOH WAT . E 5 HOH A 94 594 97 HOH WAT . E 5 HOH A 95 595 98 HOH WAT . E 5 HOH A 96 596 99 HOH WAT . E 5 HOH A 97 597 100 HOH WAT . E 5 HOH A 98 598 102 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 37.643 2.252 11.281 1 14.22 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . D 4 36.867 5.226 7.514 1 16.25 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . D 4 32.336 5.972 9.03 1 13.21 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . D 4 33.054 2.924 12.702 1 12.99 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . D 4 37.817 2.998 10.125 1 14.89 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . D 4 39.022 3.045 9.32 1 13.23 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . D 4 38.798 3.861 8.292 1 12.75 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . D 4 37.451 4.355 8.413 1 13.34 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . D 4 39.737 4.274 7.135 1 13.27 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . D 4 40.305 2.237 9.634 1 12.72 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . D 4 40.417 0.984 8.711 1 16.47 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . D 4 39.187 0.11 8.655 1 20.3 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . D 4 38.897 -0.553 9.682 1 21.25 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . D 4 38.492 0.097 7.594 1 16.69 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . D 4 35.562 5.663 7.591 1 13.55 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . D 4 34.931 6.58 6.651 1 16.15 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . D 4 33.672 6.794 7.078 1 12.07 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . D 4 33.5 6.012 8.29 1 13.26 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . D 4 35.646 7.159 5.414 1 14.19 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . D 4 32.575 7.658 6.464 1 13.59 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . D 4 32.864 8.897 6.02 1 16.62 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . D 4 32.167 5.272 10.204 1 13.33 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . D 4 31.035 5.4 11.099 1 12.82 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . D 4 31.227 4.571 12.133 1 15.02 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . D 4 32.486 3.888 11.894 1 13.62 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . D 4 29.837 6.353 10.851 1 12.54 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . D 4 30.364 4.287 13.369 1 14.58 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . D 4 29.235 4.881 13.734 1 15.16 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . D 4 34.378 2.534 12.664 1 14.76 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . D 4 35.041 1.769 13.694 1 14.49 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . D 4 36.299 1.595 13.313 1 14.46 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . D 4 36.477 2.218 12.017 1 14.52 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . D 4 34.342 1.304 14.997 1 18.32 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . D 4 37.442 0.878 14.085 1 16.01 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . D 4 38.127 2.033 14.901 1 18.81 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . D 4 39.191 1.632 15.871 1 25.79 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . D 4 39.05 1.907 17.092 1 22.07 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . D 4 40.18 1.033 15.39 1 23.19 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . D 4 36.854 3.808 9.547 1 15.15 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . D 4 34.671 5.319 8.58 1 13.76 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . D 4 33.059 4.336 10.712 1 14.2 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . D 4 35.274 2.778 11.644 1 14.28 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . D 4 34.943 4.031 10.118 1 13.9 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #