data_1N9L # _model_server_result.job_id ZvPVUDctuwMkgpKwTnLk2g _model_server_result.datetime_utc '2024-12-21 13:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1N9L # _exptl.entry_id 1N9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1N9L _cell.length_a 122.1 _cell.length_b 122.1 _cell.length_c 46.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 A,B,C,D 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.05 105.741702 53.783333 3 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 30.733333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1N9L _atom_sites.fract_transf_matrix[1][1] 0.00819 _atom_sites.fract_transf_matrix[1][2] 0.004729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 900 900 SO4 SUL . C 3 FMN A 1 500 500 FMN FMN . D 4 HOH A 1 600 600 HOH HOH . D 4 HOH A 2 601 601 HOH HOH . D 4 HOH A 3 602 602 HOH HOH . D 4 HOH A 4 603 603 HOH HOH . D 4 HOH A 5 604 604 HOH HOH . D 4 HOH A 6 605 605 HOH HOH . D 4 HOH A 7 606 606 HOH HOH . D 4 HOH A 8 607 607 HOH HOH . D 4 HOH A 9 608 608 HOH HOH . D 4 HOH A 10 609 609 HOH HOH . D 4 HOH A 11 610 610 HOH HOH . D 4 HOH A 12 611 611 HOH HOH . D 4 HOH A 13 612 612 HOH HOH . D 4 HOH A 14 613 613 HOH HOH . D 4 HOH A 15 614 614 HOH HOH . D 4 HOH A 16 615 615 HOH HOH . D 4 HOH A 17 616 616 HOH HOH . D 4 HOH A 18 617 617 HOH HOH . D 4 HOH A 19 618 618 HOH HOH . D 4 HOH A 20 619 619 HOH HOH . D 4 HOH A 21 620 620 HOH HOH . D 4 HOH A 22 621 621 HOH HOH . D 4 HOH A 23 622 622 HOH HOH . D 4 HOH A 24 623 623 HOH HOH . D 4 HOH A 25 624 624 HOH HOH . D 4 HOH A 26 625 625 HOH HOH . D 4 HOH A 27 626 626 HOH HOH . D 4 HOH A 28 627 627 HOH HOH . D 4 HOH A 29 628 628 HOH HOH . D 4 HOH A 30 629 629 HOH HOH . D 4 HOH A 31 630 630 HOH HOH . D 4 HOH A 32 631 631 HOH HOH . D 4 HOH A 33 632 632 HOH HOH . D 4 HOH A 34 633 633 HOH HOH . D 4 HOH A 35 634 634 HOH HOH . D 4 HOH A 36 635 635 HOH HOH . D 4 HOH A 37 636 636 HOH HOH . D 4 HOH A 38 637 637 HOH HOH . D 4 HOH A 39 638 638 HOH HOH . D 4 HOH A 40 639 639 HOH HOH . D 4 HOH A 41 640 640 HOH HOH . D 4 HOH A 42 641 641 HOH HOH . D 4 HOH A 43 642 642 HOH HOH . D 4 HOH A 44 643 643 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 657 657 HOH HOH . D 4 HOH A 57 658 658 HOH HOH . D 4 HOH A 58 660 660 HOH HOH . D 4 HOH A 59 661 661 HOH HOH . D 4 HOH A 60 662 662 HOH HOH . D 4 HOH A 61 663 663 HOH HOH . D 4 HOH A 62 664 664 HOH HOH . D 4 HOH A 63 665 665 HOH HOH . D 4 HOH A 64 666 666 HOH HOH . D 4 HOH A 65 667 667 HOH HOH . D 4 HOH A 66 668 668 HOH HOH . D 4 HOH A 67 669 669 HOH HOH . D 4 HOH A 68 670 670 HOH HOH . D 4 HOH A 69 671 671 HOH HOH . D 4 HOH A 70 672 672 HOH HOH . D 4 HOH A 71 673 673 HOH HOH . D 4 HOH A 72 674 674 HOH HOH . D 4 HOH A 73 675 675 HOH HOH . D 4 HOH A 74 676 676 HOH HOH . D 4 HOH A 75 677 677 HOH HOH . D 4 HOH A 76 678 678 HOH HOH . D 4 HOH A 77 680 680 HOH HOH . D 4 HOH A 78 681 681 HOH HOH . D 4 HOH A 79 682 682 HOH HOH . D 4 HOH A 80 684 684 HOH HOH . D 4 HOH A 81 685 685 HOH HOH . D 4 HOH A 82 687 687 HOH HOH . D 4 HOH A 83 689 689 HOH HOH . D 4 HOH A 84 692 692 HOH HOH . D 4 HOH A 85 693 693 HOH HOH . D 4 HOH A 86 694 694 HOH HOH . D 4 HOH A 87 696 696 HOH HOH . D 4 HOH A 88 697 697 HOH HOH . D 4 HOH A 89 699 699 HOH HOH . D 4 HOH A 90 700 700 HOH HOH . D 4 HOH A 91 703 703 HOH HOH . D 4 HOH A 92 704 704 HOH HOH . D 4 HOH A 93 706 706 HOH HOH . D 4 HOH A 94 707 707 HOH HOH . D 4 HOH A 95 708 708 HOH HOH . D 4 HOH A 96 710 710 HOH HOH . D 4 HOH A 97 811 811 HOH HOH . D 4 HOH A 98 813 813 HOH HOH . D 4 HOH A 99 814 814 HOH HOH . D 4 HOH A 100 816 816 HOH HOH . D 4 HOH A 101 817 817 HOH HOH . D 4 HOH A 102 818 818 HOH HOH . D 4 HOH A 103 819 819 HOH HOH . D 4 HOH A 104 820 820 HOH HOH . D 4 HOH A 105 821 821 HOH HOH . D 4 HOH A 106 822 822 HOH HOH . D 4 HOH A 107 823 823 HOH HOH . D 4 HOH A 108 824 824 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 11.92 52.391 17.007 1 21 ? N1 FMN 500 A 1 HETATM 2 C C2 FMN . . . C 3 11.542 53.135 15.931 1 21.49 ? C2 FMN 500 A 1 HETATM 3 O O2 FMN . . . C 3 10.537 53.765 15.855 1 22.77 ? O2 FMN 500 A 1 HETATM 4 N N3 FMN . . . C 3 12.4 53.192 14.771 1 18.02 ? N3 FMN 500 A 1 HETATM 5 C C4 FMN . . . C 3 13.609 52.546 14.651 1 21.21 ? C4 FMN 500 A 1 HETATM 6 O O4 FMN . . . C 3 14.302 52.637 13.606 1 21.71 ? O4 FMN 500 A 1 HETATM 7 C C4A FMN . . . C 3 14.042 51.751 15.801 1 21.27 ? C4A FMN 500 A 1 HETATM 8 N N5 FMN . . . C 3 15.193 51.105 15.781 1 21.08 ? N5 FMN 500 A 1 HETATM 9 C C5A FMN . . . C 3 15.569 50.361 16.876 1 19.49 ? C5A FMN 500 A 1 HETATM 10 C C6 FMN . . . C 3 16.842 49.652 16.847 1 19.11 ? C6 FMN 500 A 1 HETATM 11 C C7 FMN . . . C 3 17.277 48.89 17.919 1 19.88 ? C7 FMN 500 A 1 HETATM 12 C C7M FMN . . . C 3 18.618 48.12 17.936 1 20.45 ? C7M FMN 500 A 1 HETATM 13 C C8 FMN . . . C 3 16.433 48.783 19.148 1 21.15 ? C8 FMN 500 A 1 HETATM 14 C C8M FMN . . . C 3 16.865 47.968 20.358 1 23.39 ? C8M FMN 500 A 1 HETATM 15 C C9 FMN . . . C 3 15.201 49.446 19.203 1 21.43 ? C9 FMN 500 A 1 HETATM 16 C C9A FMN . . . C 3 14.742 50.24 18.107 1 20.95 ? C9A FMN 500 A 1 HETATM 17 N N10 FMN . . . C 3 13.491 50.956 18.072 1 21.8 ? N10 FMN 500 A 1 HETATM 18 C C10 FMN . . . C 3 13.106 51.722 16.979 1 20.26 ? C10 FMN 500 A 1 HETATM 19 C C1' FMN . . . C 3 12.512 50.912 19.22 1 21.76 ? C1' FMN 500 A 1 HETATM 20 C C2' FMN . . . C 3 12.779 51.917 20.344 1 23.35 ? C2' FMN 500 A 1 HETATM 21 O O2' FMN . . . C 3 14.179 52.129 20.509 1 22.17 ? O2' FMN 500 A 1 HETATM 22 C C3' FMN . . . C 3 12.218 51.381 21.689 1 23.32 ? C3' FMN 500 A 1 HETATM 23 O O3' FMN . . . C 3 12.81 50.023 21.893 1 23.76 ? O3' FMN 500 A 1 HETATM 24 C C4' FMN . . . C 3 10.748 51.104 21.73 1 26.74 ? C4' FMN 500 A 1 HETATM 25 O O4' FMN . . . C 3 9.923 52.261 21.399 1 22.67 ? O4' FMN 500 A 1 HETATM 26 C C5' FMN . . . C 3 10.441 50.581 23.145 1 28.26 ? C5' FMN 500 A 1 HETATM 27 O O5' FMN . . . C 3 9.301 51.182 23.736 1 35.31 ? O5' FMN 500 A 1 HETATM 28 P P FMN . . . C 3 9.278 52.535 24.544 1 35.01 ? P FMN 500 A 1 HETATM 29 O O1P FMN . . . C 3 9.733 53.634 23.622 1 33.38 ? O1P FMN 500 A 1 HETATM 30 O O2P FMN . . . C 3 10.197 52.425 25.791 1 33.73 ? O2P FMN 500 A 1 HETATM 31 O O3P FMN . . . C 3 7.791 52.595 24.893 1 37.58 ? O3P FMN 500 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #