data_1NA3 # _model_server_result.job_id Q_g1yjD6pOLgVN2cRnlLLQ _model_server_result.datetime_utc '2024-12-26 01:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1na3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":151}' # _entry.id 1NA3 # _exptl.entry_id 1NA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.301 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-methylethyl 1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NA3 _cell.length_a 44.986 _cell.length_b 54.941 _cell.length_c 66.938 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NA3 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . A HOH 305 2_665 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 I O HOH . B HOH 300 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 E MG MG . B MG 301 1_555 I O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 E MG MG . B MG 301 1_555 I O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 E MG MG . B MG 301 1_555 I O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc6 E MG MG . B MG 301 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E MG MG . B MG 301 1_555 I O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 E MG MG . B MG 301 1_555 I O HOH . B HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc9 I O HOH . B HOH 306 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc10 I O HOH . B HOH 309 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 I O HOH . B HOH 313 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 I O HOH . B HOH 324 1_555 F MG MG . B MG 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C9 H18 O5 S' _chem_comp.formula_weight 238.301 _chem_comp.id IPT _chem_comp.mon_nstd_flag . _chem_comp.name '1-methylethyl 1-thio-beta-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'ISOPROPYL-1-BETA-D-THIOGALACTOSIDE;1-(ISOPROPYLTHIO)-BETA-GALACTOPYRANSIDE;1-methylethyl 1-thio-beta-D-galactoside;1-methylethyl 1-thio-D-galactoside;1-methylethyl 1-thio-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPT sing 113 n n C1 O5 IPT sing 114 n n C1 S1 IPT sing 115 n n C1 H1 IPT sing 116 n n C2 O2 IPT sing 117 n n C2 C3 IPT sing 118 n n C2 H2 IPT sing 119 n n O2 HO2 IPT sing 120 n n C3 O3 IPT sing 121 n n C3 C4 IPT sing 122 n n C3 H3 IPT sing 123 n n O3 HO3 IPT sing 124 n n C4 O4 IPT sing 125 n n C4 C5 IPT sing 126 n n C4 H4 IPT sing 127 n n O4 HO4 IPT sing 128 n n C5 O5 IPT sing 129 n n C5 C6 IPT sing 130 n n C5 H5 IPT sing 131 n n C6 O6 IPT sing 132 n n C6 H61 IPT sing 133 n n C6 H62 IPT sing 134 n n O6 HO6 IPT sing 135 n n S1 C1' IPT sing 136 n n C1' C2' IPT sing 137 n n C1' C3' IPT sing 138 n n C1' H1' IPT sing 139 n n C2' "H2'1" IPT sing 140 n n C2' "H2'2" IPT sing 141 n n C2' "H2'3" IPT sing 142 n n C3' "H3'1" IPT sing 143 n n C3' "H3'2" IPT sing 144 n n C3' "H3'3" IPT sing 145 n n # _pdbx_chem_comp_identifier.comp_id IPT _pdbx_chem_comp_identifier.identifier isopropyl-1-b-D-thiogalactoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1NA3 _atom_sites.fract_transf_matrix[1][1] 0.022229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 101 101 TRS TMN . D 3 IPT A 1 201 201 IPT IPT . E 4 MG B 1 301 301 MG MG . F 4 MG B 1 336 336 MG MG . G 3 IPT B 1 151 151 IPT IPT . H 5 HOH A 1 305 305 HOH HOH . H 5 HOH A 2 307 307 HOH HOH . H 5 HOH A 3 314 314 HOH HOH . H 5 HOH A 4 315 315 HOH HOH . H 5 HOH A 5 316 316 HOH HOH . H 5 HOH A 6 317 317 HOH HOH . H 5 HOH A 7 318 318 HOH HOH . H 5 HOH A 8 320 320 HOH HOH . H 5 HOH A 9 322 322 HOH HOH . H 5 HOH A 10 326 326 HOH HOH . H 5 HOH A 11 331 331 HOH HOH . H 5 HOH A 12 335 335 HOH HOH . H 5 HOH A 13 338 338 HOH HOH . H 5 HOH A 14 340 340 HOH HOH . H 5 HOH A 15 341 341 HOH HOH . H 5 HOH A 16 344 344 HOH HOH . H 5 HOH A 17 345 345 HOH HOH . H 5 HOH A 18 346 346 HOH HOH . H 5 HOH A 19 347 347 HOH HOH . H 5 HOH A 20 348 348 HOH HOH . H 5 HOH A 21 350 350 HOH HOH . H 5 HOH A 22 356 356 HOH HOH . H 5 HOH A 23 360 360 HOH HOH . H 5 HOH A 24 361 361 HOH HOH . H 5 HOH A 25 363 363 HOH HOH . H 5 HOH A 26 368 368 HOH HOH . H 5 HOH A 27 372 372 HOH HOH . H 5 HOH A 28 373 373 HOH HOH . H 5 HOH A 29 374 374 HOH HOH . H 5 HOH A 30 376 376 HOH HOH . H 5 HOH A 31 377 377 HOH HOH . H 5 HOH A 32 378 378 HOH HOH . H 5 HOH A 33 380 380 HOH HOH . H 5 HOH A 34 381 381 HOH HOH . H 5 HOH A 35 382 382 HOH HOH . H 5 HOH A 36 384 384 HOH HOH . H 5 HOH A 37 385 385 HOH HOH . H 5 HOH A 38 390 390 HOH HOH . H 5 HOH A 39 393 393 HOH HOH . I 5 HOH B 1 300 300 HOH HOH . I 5 HOH B 2 302 302 HOH HOH . I 5 HOH B 3 303 303 HOH HOH . I 5 HOH B 4 304 304 HOH HOH . I 5 HOH B 5 306 306 HOH HOH . I 5 HOH B 6 308 308 HOH HOH . I 5 HOH B 7 309 309 HOH HOH . I 5 HOH B 8 310 310 HOH HOH . I 5 HOH B 9 311 311 HOH HOH . I 5 HOH B 10 312 312 HOH HOH . I 5 HOH B 11 313 313 HOH HOH . I 5 HOH B 12 319 319 HOH HOH . I 5 HOH B 13 321 321 HOH HOH . I 5 HOH B 14 323 323 HOH HOH . I 5 HOH B 15 324 324 HOH HOH . I 5 HOH B 16 325 325 HOH HOH . I 5 HOH B 17 327 327 HOH HOH . I 5 HOH B 18 328 328 HOH HOH . I 5 HOH B 19 329 329 HOH HOH . I 5 HOH B 20 330 330 HOH HOH . I 5 HOH B 21 332 332 HOH HOH . I 5 HOH B 22 333 333 HOH HOH . I 5 HOH B 23 339 339 HOH HOH . I 5 HOH B 24 342 342 HOH HOH . I 5 HOH B 25 343 343 HOH HOH . I 5 HOH B 26 349 349 HOH HOH . I 5 HOH B 27 351 351 HOH HOH . I 5 HOH B 28 352 352 HOH HOH . I 5 HOH B 29 353 353 HOH HOH . I 5 HOH B 30 354 354 HOH HOH . I 5 HOH B 31 355 355 HOH HOH . I 5 HOH B 32 357 357 HOH HOH . I 5 HOH B 33 358 358 HOH HOH . I 5 HOH B 34 359 359 HOH HOH . I 5 HOH B 35 362 362 HOH HOH . I 5 HOH B 36 364 364 HOH HOH . I 5 HOH B 37 365 365 HOH HOH . I 5 HOH B 38 366 366 HOH HOH . I 5 HOH B 39 367 367 HOH HOH . I 5 HOH B 40 369 369 HOH HOH . I 5 HOH B 41 370 370 HOH HOH . I 5 HOH B 42 371 371 HOH HOH . I 5 HOH B 43 375 375 HOH HOH . I 5 HOH B 44 379 379 HOH HOH . I 5 HOH B 45 383 383 HOH HOH . I 5 HOH B 46 386 386 HOH HOH . I 5 HOH B 47 387 387 HOH HOH . I 5 HOH B 48 388 388 HOH HOH . I 5 HOH B 49 389 389 HOH HOH . I 5 HOH B 50 391 391 HOH HOH . I 5 HOH B 51 392 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPT . . . G 3 23.537 35.283 60.206 1 29.68 ? C1 IPT 151 B 1 HETATM 2 C C2 IPT . . . G 3 23.249 33.777 60.339 1 29.24 ? C2 IPT 151 B 1 HETATM 3 O O2 IPT . . . G 3 21.9 33.499 60.704 1 28.84 ? O2 IPT 151 B 1 HETATM 4 C C3 IPT . . . G 3 24.331 32.937 60.998 1 28.79 ? C3 IPT 151 B 1 HETATM 5 O O3 IPT . . . G 3 24.234 31.528 60.739 1 27.06 ? O3 IPT 151 B 1 HETATM 6 C C4 IPT . . . G 3 25.771 33.484 60.923 1 29.25 ? C4 IPT 151 B 1 HETATM 7 O O4 IPT . . . G 3 26.252 32.995 59.668 1 31.1 ? O4 IPT 151 B 1 HETATM 8 C C5 IPT . . . G 3 26.005 34.969 60.672 1 32.33 ? C5 IPT 151 B 1 HETATM 9 O O5 IPT . . . G 3 24.913 35.711 60.132 1 30.19 ? O5 IPT 151 B 1 HETATM 10 C C6 IPT . . . G 3 27.264 35.221 59.81 1 36.31 ? C6 IPT 151 B 1 HETATM 11 O O6 IPT . . . G 3 27.956 36.243 60.495 1 43.65 ? O6 IPT 151 B 1 HETATM 12 S S1 IPT . . . G 3 22.393 36.24 59.208 1 30.1 ? S1 IPT 151 B 1 HETATM 13 C C1' IPT . . . G 3 22.581 37.865 59.902 1 31.05 ? C1' IPT 151 B 1 HETATM 14 C C2' IPT . . . G 3 21.625 38.079 61.069 1 30.22 ? C2' IPT 151 B 1 HETATM 15 C C3' IPT . . . G 3 22.324 38.883 58.802 1 31.13 ? C3' IPT 151 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 15 #