data_1NB0
#
_model_server_result.job_id            dHgAUoqhVq_yNUaiPJ9Wnw 
_model_server_result.datetime_utc      '2024-10-10 23:32:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nb0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1NB0 
#
_exptl.entry_id    1NB0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1NB0 
_cell.length_a            57.096 
_cell.length_b            57.096 
_cell.length_c            82.505 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NB0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 26 A THR 34 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 A OG1 THR 26 A THR 34 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc3 B MG MG . A MG 201 1_555 C O1B ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc4 B MG MG . A MG 201 1_555 C O2A ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 D O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 D O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1NB0 
_atom_sites.fract_transf_matrix[1][1]    0.017514 
_atom_sites.fract_transf_matrix[1][2]    0.010112 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020224 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 301 MG MG . 
C 3 ADP A 1 301 201 ADP ADP . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 430 430 HOH HOH . 
D 4 HOH A 31 431 431 HOH HOH . 
D 4 HOH A 32 432 432 HOH HOH . 
D 4 HOH A 33 433 433 HOH HOH . 
D 4 HOH A 34 434 434 HOH HOH . 
D 4 HOH A 35 435 435 HOH HOH . 
D 4 HOH A 36 436 436 HOH HOH . 
D 4 HOH A 37 437 437 HOH HOH . 
D 4 HOH A 38 438 438 HOH HOH . 
D 4 HOH A 39 439 439 HOH HOH . 
D 4 HOH A 40 440 440 HOH HOH . 
D 4 HOH A 41 441 441 HOH HOH . 
D 4 HOH A 42 442 442 HOH HOH . 
D 4 HOH A 43 443 443 HOH HOH . 
D 4 HOH A 44 444 444 HOH HOH . 
D 4 HOH A 45 445 445 HOH HOH . 
D 4 HOH A 46 446 446 HOH HOH . 
D 4 HOH A 47 447 447 HOH HOH . 
D 4 HOH A 48 448 448 HOH HOH . 
D 4 HOH A 49 449 449 HOH HOH . 
D 4 HOH A 50 450 450 HOH HOH . 
D 4 HOH A 51 451 451 HOH HOH . 
D 4 HOH A 52 452 452 HOH HOH . 
D 4 HOH A 53 453 453 HOH HOH . 
D 4 HOH A 54 454 454 HOH HOH . 
D 4 HOH A 55 455 455 HOH HOH . 
D 4 HOH A 56 456 456 HOH HOH . 
D 4 HOH A 57 457 457 HOH HOH . 
D 4 HOH A 58 458 458 HOH HOH . 
D 4 HOH A 59 459 459 HOH HOH . 
D 4 HOH A 60 460 460 HOH HOH . 
D 4 HOH A 61 461 461 HOH HOH . 
D 4 HOH A 62 462 462 HOH HOH . 
D 4 HOH A 63 463 463 HOH HOH . 
D 4 HOH A 64 464 464 HOH HOH . 
D 4 HOH A 65 465 465 HOH HOH . 
D 4 HOH A 66 466 466 HOH HOH . 
D 4 HOH A 67 467 467 HOH HOH . 
D 4 HOH A 68 468 468 HOH HOH . 
D 4 HOH A 69 469 469 HOH HOH . 
D 4 HOH A 70 470 470 HOH HOH . 
D 4 HOH A 71 471 471 HOH HOH . 
D 4 HOH A 72 472 472 HOH HOH . 
D 4 HOH A 73 473 473 HOH HOH . 
D 4 HOH A 74 474 474 HOH HOH . 
D 4 HOH A 75 475 475 HOH HOH . 
D 4 HOH A 76 476 476 HOH HOH . 
D 4 HOH A 77 477 477 HOH HOH . 
D 4 HOH A 78 478 478 HOH HOH . 
D 4 HOH A 79 479 479 HOH HOH . 
D 4 HOH A 80 480 480 HOH HOH . 
D 4 HOH A 81 481 481 HOH HOH . 
D 4 HOH A 82 482 482 HOH HOH . 
D 4 HOH A 83 483 483 HOH HOH . 
D 4 HOH A 84 484 484 HOH HOH . 
D 4 HOH A 85 485 485 HOH HOH . 
D 4 HOH A 86 486 486 HOH HOH . 
D 4 HOH A 87 487 487 HOH HOH . 
D 4 HOH A 88 488 488 HOH HOH . 
D 4 HOH A 89 489 489 HOH HOH . 
D 4 HOH A 90 490 490 HOH HOH . 
D 4 HOH A 91 491 491 HOH HOH . 
D 4 HOH A 92 492 492 HOH HOH . 
D 4 HOH A 93 493 493 HOH HOH . 
D 4 HOH A 94 494 494 HOH HOH . 
D 4 HOH A 95 495 495 HOH HOH . 
D 4 HOH A 96 496 496 HOH HOH . 
D 4 HOH A 97 497 497 HOH HOH . 
D 4 HOH A 98 498 498 HOH HOH . 
D 4 HOH A 99 499 499 HOH HOH . 
D 4 HOH A 100 500 500 HOH HOH . 
D 4 HOH A 101 501 501 HOH HOH . 
D 4 HOH A 102 502 502 HOH HOH . 
D 4 HOH A 103 503 503 HOH HOH . 
D 4 HOH A 104 504 504 HOH HOH . 
D 4 HOH A 105 505 505 HOH HOH . 
D 4 HOH A 106 506 506 HOH HOH . 
D 4 HOH A 107 507 507 HOH HOH . 
D 4 HOH A 108 508 508 HOH HOH . 
D 4 HOH A 109 509 509 HOH HOH . 
D 4 HOH A 110 510 510 HOH HOH . 
D 4 HOH A 111 511 511 HOH HOH . 
D 4 HOH A 112 512 512 HOH HOH . 
D 4 HOH A 113 513 513 HOH HOH . 
D 4 HOH A 114 514 514 HOH HOH . 
D 4 HOH A 115 515 515 HOH HOH . 
D 4 HOH A 116 516 516 HOH HOH . 
D 4 HOH A 117 517 517 HOH HOH . 
D 4 HOH A 118 518 518 HOH HOH . 
D 4 HOH A 119 519 519 HOH HOH . 
D 4 HOH A 120 520 520 HOH HOH . 
D 4 HOH A 121 521 521 HOH HOH . 
D 4 HOH A 122 522 522 HOH HOH . 
D 4 HOH A 123 523 523 HOH HOH . 
D 4 HOH A 124 524 524 HOH HOH . 
D 4 HOH A 125 525 525 HOH HOH . 
D 4 HOH A 126 526 526 HOH HOH . 
D 4 HOH A 127 527 527 HOH HOH . 
D 4 HOH A 128 528 528 HOH HOH . 
D 4 HOH A 129 529 529 HOH HOH . 
D 4 HOH A 130 530 530 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 25.08 12.26 18.932 1 19.24 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . C 3 25.722 12.236 17.603 1 19.9 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . C 3 24.539 10.932 19.427 1 21.39 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . C 3 26.106 12.831 19.89 1 18.86 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . C 3 22.792 13.701 17.804 1 18.6 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . C 3 22.345 15.118 18.143 1 19.48 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . C 3 23.367 13.525 16.391 1 18.31 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . C 3 23.85 13.29 18.907 1 17.71 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . C 3 21.559 12.777 18.013 1 17.27 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . C 3 21.634 11.386 17.674 1 17.43 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . C 3 20.602 10.598 18.446 1 19.27 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . C 3 19.309 10.937 18.025 1 19.03 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . C 3 20.68 9.083 18.137 1 19.35 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . C 3 21.592 8.378 18.969 1 19.52 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . C 3 19.26 8.628 18.447 1 19.54 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . C 3 19.126 8.298 19.827 1 21.97 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . C 3 18.399 9.859 18.217 1 19.07 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . C 3 17.532 9.876 17.029 1 20.07 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . C 3 16.188 10.183 17.056 1 21.95 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . C 3 15.71 10.179 15.809 1 19.8 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . C 3 16.742 9.867 14.956 1 18.11 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . C 3 16.794 9.713 13.572 1 19.96 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . C 3 15.783 10.032 12.776 1 18.29 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . C 3 18.031 9.377 13.006 1 17.35 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . C 3 19.14 9.231 13.806 1 17.78 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . C 3 19.086 9.35 15.17 1 16.9 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . C 3 17.884 9.681 15.723 1 19.33 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#