data_1NBB
#
_model_server_result.job_id            Mk-k5u8nsVc62ArXqyxrrQ 
_model_server_result.datetime_utc      '2024-12-27 00:15:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nbb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":131}' 
#
_entry.id    1NBB 
#
_exptl.entry_id    1NBB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              83.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-BUTYL ISOCYANIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          87.02 
_cell.angle_gamma         90 
_cell.entry_id            1NBB 
_cell.length_a            47.734 
_cell.length_b            70.535 
_cell.length_c            89.652 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NBB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 118 A CYS 118 1_555 C CAB HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale2 A SG CYS 121 A CYS 121 1_555 C CAC HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
covale ? covale3 B SG CYS 118 B CYS 118 1_555 E CAB HEM . B HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale4 B SG CYS 121 B CYS 121 1_555 E CAC HEM . B HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
metalc ? metalc1 A NE2 HIS 122 A HIS 122 1_555 C FE HEM . A HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc2 C FE HEM . A HEM 130 1_555 D C NBN . A NBN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc3 C FE HEM . A HEM 130 1_555 D N NBN . A NBN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? 
metalc ? metalc4 B NE2 HIS 122 B HIS 122 1_555 E FE HEM . B HEM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc5 E FE HEM . B HEM 130 1_555 F C NBN . B NBN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc6 E FE HEM . B HEM 130 1_555 F N NBN . B NBN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? 
#
_chem_comp.formula           'C5 H9 N' 
_chem_comp.formula_weight    83.132 
_chem_comp.id                NBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-BUTYL ISOCYANIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N NBN trip 319 n n 
N C1 NBN sing 320 n n 
C1 C2 NBN sing 321 n n 
C1 H11 NBN sing 322 n n 
C1 H12 NBN sing 323 n n 
C2 C3 NBN sing 324 n n 
C2 H21 NBN sing 325 n n 
C2 H22 NBN sing 326 n n 
C3 C4 NBN sing 327 n n 
C3 H31 NBN sing 328 n n 
C3 H32 NBN sing 329 n n 
C4 H41 NBN sing 330 n n 
C4 H42 NBN sing 331 n n 
C4 H43 NBN sing 332 n n 
#
_atom_sites.entry_id                     1NBB 
_atom_sites.fract_transf_matrix[1][1]    0.020949 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.001091 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 130 1 HEM HEM . 
D 3 NBN A 1 131 2 NBN NBN . 
E 2 HEM B 1 130 1 HEM HEM . 
F 3 NBN B 1 131 2 NBN NBN . 
G 4 HOH A 1 132 2 HOH HOH . 
G 4 HOH A 2 133 4 HOH HOH . 
G 4 HOH A 3 134 5 HOH HOH . 
G 4 HOH A 4 135 7 HOH HOH . 
G 4 HOH A 5 136 8 HOH HOH . 
G 4 HOH A 6 137 9 HOH HOH . 
G 4 HOH A 7 138 10 HOH HOH . 
G 4 HOH A 8 139 12 HOH HOH . 
G 4 HOH A 9 140 13 HOH HOH . 
G 4 HOH A 10 141 14 HOH HOH . 
G 4 HOH A 11 142 22 HOH HOH . 
G 4 HOH A 12 143 24 HOH HOH . 
G 4 HOH A 13 144 29 HOH HOH . 
G 4 HOH A 14 145 31 HOH HOH . 
G 4 HOH A 15 146 32 HOH HOH . 
G 4 HOH A 16 147 33 HOH HOH . 
G 4 HOH A 17 148 35 HOH HOH . 
G 4 HOH A 18 149 36 HOH HOH . 
G 4 HOH A 19 150 38 HOH HOH . 
G 4 HOH A 20 151 39 HOH HOH . 
G 4 HOH A 21 152 41 HOH HOH . 
G 4 HOH A 22 153 42 HOH HOH . 
G 4 HOH A 23 154 47 HOH HOH . 
G 4 HOH A 24 155 60 HOH HOH . 
G 4 HOH A 25 156 61 HOH HOH . 
G 4 HOH A 26 157 62 HOH HOH . 
G 4 HOH A 27 158 65 HOH HOH . 
G 4 HOH A 28 159 66 HOH HOH . 
G 4 HOH A 29 160 67 HOH HOH . 
G 4 HOH A 30 161 68 HOH HOH . 
G 4 HOH A 31 162 70 HOH HOH . 
G 4 HOH A 32 163 73 HOH HOH . 
G 4 HOH A 33 164 81 HOH HOH . 
G 4 HOH A 34 165 90 HOH HOH . 
G 4 HOH A 35 166 91 HOH HOH . 
G 4 HOH A 36 167 92 HOH HOH . 
G 4 HOH A 37 168 97 HOH HOH . 
G 4 HOH A 38 169 99 HOH HOH . 
G 4 HOH A 39 170 100 HOH HOH . 
G 4 HOH A 40 171 102 HOH HOH . 
G 4 HOH A 41 172 104 HOH HOH . 
G 4 HOH A 42 173 109 HOH HOH . 
G 4 HOH A 43 174 113 HOH HOH . 
G 4 HOH A 44 175 115 HOH HOH . 
G 4 HOH A 45 176 116 HOH HOH . 
G 4 HOH A 46 177 122 HOH HOH . 
G 4 HOH A 47 178 125 HOH HOH . 
G 4 HOH A 48 179 126 HOH HOH . 
G 4 HOH A 49 180 138 HOH HOH . 
H 4 HOH B 1 132 1 HOH HOH . 
H 4 HOH B 2 133 3 HOH HOH . 
H 4 HOH B 3 134 6 HOH HOH . 
H 4 HOH B 4 135 11 HOH HOH . 
H 4 HOH B 5 136 15 HOH HOH . 
H 4 HOH B 6 137 16 HOH HOH . 
H 4 HOH B 7 138 17 HOH HOH . 
H 4 HOH B 8 139 18 HOH HOH . 
H 4 HOH B 9 140 23 HOH HOH . 
H 4 HOH B 10 141 25 HOH HOH . 
H 4 HOH B 11 142 26 HOH HOH . 
H 4 HOH B 12 143 27 HOH HOH . 
H 4 HOH B 13 144 43 HOH HOH . 
H 4 HOH B 14 145 44 HOH HOH . 
H 4 HOH B 15 146 46 HOH HOH . 
H 4 HOH B 16 147 48 HOH HOH . 
H 4 HOH B 17 148 49 HOH HOH . 
H 4 HOH B 18 149 50 HOH HOH . 
H 4 HOH B 19 150 51 HOH HOH . 
H 4 HOH B 20 151 52 HOH HOH . 
H 4 HOH B 21 152 53 HOH HOH . 
H 4 HOH B 22 153 54 HOH HOH . 
H 4 HOH B 23 154 55 HOH HOH . 
H 4 HOH B 24 155 56 HOH HOH . 
H 4 HOH B 25 156 57 HOH HOH . 
H 4 HOH B 26 157 58 HOH HOH . 
H 4 HOH B 27 158 59 HOH HOH . 
H 4 HOH B 28 159 63 HOH HOH . 
H 4 HOH B 29 160 77 HOH HOH . 
H 4 HOH B 30 161 78 HOH HOH . 
H 4 HOH B 31 162 79 HOH HOH . 
H 4 HOH B 32 163 82 HOH HOH . 
H 4 HOH B 33 164 85 HOH HOH . 
H 4 HOH B 34 165 86 HOH HOH . 
H 4 HOH B 35 166 87 HOH HOH . 
H 4 HOH B 36 167 88 HOH HOH . 
H 4 HOH B 37 168 93 HOH HOH . 
H 4 HOH B 38 169 94 HOH HOH . 
H 4 HOH B 39 170 106 HOH HOH . 
H 4 HOH B 40 171 108 HOH HOH . 
H 4 HOH B 41 172 110 HOH HOH . 
H 4 HOH B 42 173 114 HOH HOH . 
H 4 HOH B 43 174 119 HOH HOH . 
H 4 HOH B 44 175 120 HOH HOH . 
H 4 HOH B 45 176 131 HOH HOH . 
H 4 HOH B 46 177 133 HOH HOH . 
H 4 HOH B 47 178 134 HOH HOH . 
H 4 HOH B 48 179 135 HOH HOH . 
H 4 HOH B 49 180 136 HOH HOH . 
H 4 HOH B 50 181 137 HOH HOH . 
H 4 HOH B 51 182 139 HOH HOH . 
H 4 HOH B 52 183 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C NBN . . . D 3 25.901 17.975 29.627 1 20.27 ? C NBN 131 A 1 
HETATM 2 N N NBN . . . D 3 24.992 17.846 30.344 1 22.22 ? N NBN 131 A 1 
HETATM 3 C C1 NBN . . . D 3 23.907 17.398 31.231 1 24.91 ? C1 NBN 131 A 1 
HETATM 4 C C2 NBN . . . D 3 24.402 16.268 32.135 1 26.96 ? C2 NBN 131 A 1 
HETATM 5 C C3 NBN . . . D 3 25.497 16.776 33.085 1 30.9 ? C3 NBN 131 A 1 
HETATM 6 C C4 NBN . . . D 3 26.11 15.669 33.943 1 30.95 ? C4 NBN 131 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#