data_1NBK # _model_server_result.job_id DPiXFbujsOBuXFHG1-pJ6Q _model_server_result.datetime_utc '2024-12-26 18:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":35}' # _entry.id 1NBK # _exptl.entry_id 1NBK _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-5-GUANIDINO-PENTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 G 3 A G 3 1_555 A N3 C 32 A C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 G 3 A G 3 1_555 A O2 C 32 A C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 G 3 A G 3 1_555 A N4 C 32 A C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 4 A A 4 1_555 A N3 U 31 A U 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 4 A A 4 1_555 A O4 U 31 A U 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 C 6 A C 6 1_555 A N1 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 C 6 A C 6 1_555 A O6 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 C 6 A C 6 1_555 A N2 G 29 A G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog18 A N3 U 7 A U 7 1_555 A N7 A 10 A A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog19 A O4 U 7 A U 7 1_555 A N6 A 10 A A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 9 A G 9 1_555 A N3 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 9 A G 9 1_555 A O2 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 9 A G 9 1_555 A N4 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 A 10 A A 10 1_555 A N3 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 A 10 A A 10 1_555 A O4 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 U 11 A U 11 1_555 A N1 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 U 11 A U 11 1_555 A N6 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 C 12 A C 12 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 C 12 A C 12 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 C 12 A C 12 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 C 13 A C 13 1_555 A N1 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 C 13 A C 13 1_555 A O6 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 C 13 A C 13 1_555 A N2 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 C 14 A C 14 1_555 A N1 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 C 14 A C 14 1_555 A O6 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 C 14 A C 14 1_555 A N2 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 G 15 A G 15 1_555 A N3 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 G 15 A G 15 1_555 A O2 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 G 15 A G 15 1_555 A N4 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog39 A N1 G 15 A G 15 1_555 A N3 G 21 A G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog40 A N2 G 16 A G 16 1_555 A N7 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog41 A N3 G 16 A G 16 1_555 A N6 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog42 A N3 U 23 A U 23 1_555 A N7 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog43 A O4 U 23 A U 23 1_555 A N6 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id GND _chem_comp.mon_nstd_flag n _chem_comp.name '2-AMINO-5-GUANIDINO-PENTANOIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-argininium(2+);L-argininediium # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB GND sing 116 n n CA C GND sing 117 n n CA N GND sing 118 n n CA HA GND sing 119 n n CB CG GND sing 120 n n CB HB1 GND sing 121 n n CB HB2 GND sing 122 n n CG CD GND sing 123 n n CG HG1 GND sing 124 n n CG HG2 GND sing 125 n n CD NE GND sing 126 n n CD HD1 GND sing 127 n n CD HD2 GND sing 128 n n NE CZ GND sing 129 n n NE HE GND sing 130 n n CZ NH1 GND doub 131 n n CZ NH2 GND sing 132 n n NH1 HH11 GND sing 133 n n NH2 HH21 GND sing 134 n n NH2 HH22 GND sing 135 n n C OXT GND sing 136 n n C O GND doub 137 n n OXT HXT GND sing 138 n n N HN1 GND sing 139 n n N HN2 GND sing 140 n n N HN3 GND sing 141 n n # _atom_sites.entry_id 1NBK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GND A 1 35 35 GND ARG . C 2 GND A 1 36 36 GND ARG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA GND . . . B 2 56.1 0.107 -2.538 1 0 ? CA GND 35 A 1 HETATM 2 C CB GND . . . B 2 56.86 1.174 -3.327 1 0 ? CB GND 35 A 1 HETATM 3 C CG GND . . . B 2 58.341 1.091 -2.993 1 0 ? CG GND 35 A 1 HETATM 4 C CD GND . . . B 2 59.12 1.865 -4.039 1 0 ? CD GND 35 A 1 HETATM 5 N NE GND . . . B 2 60.419 2.204 -3.408 1 0 ? NE GND 35 A 1 HETATM 6 C CZ GND . . . B 2 60.587 3.363 -2.847 1 0 ? CZ GND 35 A 1 HETATM 7 N NH1 GND . . . B 2 61.767 3.711 -2.417 1 0 ? NH1 GND 35 A 1 HETATM 8 N NH2 GND . . . B 2 59.574 4.161 -2.681 1 0 ? NH2 GND 35 A 1 HETATM 9 C C GND . . . B 2 54.619 0.477 -2.418 1 0 ? C GND 35 A 1 HETATM 10 O OXT GND . . . B 2 54.227 1.47 -3.008 1 0 ? OXT GND 35 A 1 HETATM 11 O O GND . . . B 2 53.904 -0.24 -1.739 1 0 ? O GND 35 A 1 HETATM 12 N N GND . . . B 2 56.255 -1.144 -3.334 1 0 ? N GND 35 A 1 HETATM 13 H HA GND . . . B 2 56.542 -0.011 -1.561 1 0 ? HA GND 35 A 1 HETATM 14 H HB1 GND . . . B 2 56.492 2.153 -3.064 1 0 ? HB1 GND 35 A 1 HETATM 15 H HB2 GND . . . B 2 56.725 1.008 -4.385 1 0 ? HB2 GND 35 A 1 HETATM 16 H HG1 GND . . . B 2 58.656 0.061 -3.006 1 0 ? HG1 GND 35 A 1 HETATM 17 H HG2 GND . . . B 2 58.516 1.52 -2.022 1 0 ? HG2 GND 35 A 1 HETATM 18 H HD1 GND . . . B 2 58.592 2.764 -4.302 1 0 ? HD1 GND 35 A 1 HETATM 19 H HD2 GND . . . B 2 59.277 1.249 -4.903 1 0 ? HD2 GND 35 A 1 HETATM 20 H HE GND . . . B 2 61.164 1.578 -3.462 1 0 ? HE GND 35 A 1 HETATM 21 H HH11 GND . . . B 2 62.54 3.089 -2.525 1 0 ? HH11 GND 35 A 1 HETATM 22 H HH21 GND . . . B 2 58.66 3.888 -2.971 1 0 ? HH21 GND 35 A 1 HETATM 23 H HH22 GND . . . B 2 59.719 5.055 -2.279 1 0 ? HH22 GND 35 A 1 HETATM 24 H HN1 GND . . . B 2 57.186 -1.566 -3.141 1 0 ? HN1 GND 35 A 1 HETATM 25 H HN2 GND . . . B 2 56.178 -0.921 -4.348 1 0 ? HN2 GND 35 A 1 HETATM 26 H HN3 GND . . . B 2 55.51 -1.818 -3.07 1 0 ? HN3 GND 35 A 1 HETATM 27 H HH12 GND . . . B 2 61.897 4.6 -1.978 1 0 ? HH12 GND 35 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #