data_1NBX
#
_model_server_result.job_id            makvZXfiZvN3A6e6p3grbg 
_model_server_result.datetime_utc      '2024-11-14 16:58:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nbx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":5011}' 
#
_entry.id    1NBX 
#
_exptl.entry_id    1NBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.9 
_cell.angle_gamma         90 
_cell.entry_id            1NBX 
_cell.length_a            58.3 
_cell.length_b            87.7 
_cell.length_c            46.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 205 n n 
C1 H1C1 MRD sing 206 n n 
C1 H1C2 MRD sing 207 n n 
C1 H1C3 MRD sing 208 n n 
C2 O2 MRD sing 209 n n 
C2 CM MRD sing 210 n n 
C2 C3 MRD sing 211 n n 
O2 H2 MRD sing 212 n n 
CM HMC1 MRD sing 213 n n 
CM HMC2 MRD sing 214 n n 
CM HMC3 MRD sing 215 n n 
C3 C4 MRD sing 216 n n 
C3 H3C1 MRD sing 217 n n 
C3 H3C2 MRD sing 218 n n 
C4 O4 MRD sing 219 n n 
C4 C5 MRD sing 220 n n 
C4 H4 MRD sing 221 n n 
O4 HA MRD sing 222 n n 
C5 H5C1 MRD sing 223 n n 
C5 H5C2 MRD sing 224 n n 
C5 H5C3 MRD sing 225 n n 
#
_atom_sites.entry_id                     1NBX 
_atom_sites.fract_transf_matrix[1][1]    0.017153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002686 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MRD A 1 5011 5011 MRD MPD . 
F 3 HOH A 1 6006 6006 HOH HOH . 
F 3 HOH A 2 6010 6010 HOH HOH . 
F 3 HOH A 3 6012 6012 HOH HOH . 
F 3 HOH A 4 6013 6013 HOH HOH . 
F 3 HOH A 5 6018 6018 HOH HOH . 
F 3 HOH A 6 6028 6028 HOH HOH . 
F 3 HOH A 7 6031 6031 HOH HOH . 
F 3 HOH A 8 6032 6032 HOH HOH . 
F 3 HOH A 9 6034 6034 HOH HOH . 
F 3 HOH A 10 6035 6035 HOH HOH . 
F 3 HOH A 11 6042 6042 HOH HOH . 
F 3 HOH A 12 6043 6043 HOH HOH . 
F 3 HOH A 13 6045 6045 HOH HOH . 
F 3 HOH A 14 6047 6047 HOH HOH . 
F 3 HOH A 15 6049 6049 HOH HOH . 
F 3 HOH A 16 6053 6053 HOH HOH . 
F 3 HOH A 17 6058 6058 HOH HOH . 
F 3 HOH A 18 6065 6065 HOH HOH . 
F 3 HOH A 19 6072 6072 HOH HOH . 
F 3 HOH A 20 6075 6075 HOH HOH . 
F 3 HOH A 21 6077 6077 HOH HOH . 
F 3 HOH A 22 6078 6078 HOH HOH . 
F 3 HOH A 23 6079 6079 HOH HOH . 
F 3 HOH A 24 6080 6080 HOH HOH . 
F 3 HOH A 25 6084 6084 HOH HOH . 
F 3 HOH A 26 6095 6095 HOH HOH . 
F 3 HOH A 27 6101 6101 HOH HOH . 
F 3 HOH A 28 6111 6111 HOH HOH . 
F 3 HOH A 29 6112 6112 HOH HOH . 
F 3 HOH A 30 6114 6114 HOH HOH . 
F 3 HOH A 31 6140 6140 HOH HOH . 
F 3 HOH A 32 6141 6141 HOH HOH . 
F 3 HOH A 33 6143 6143 HOH HOH . 
F 3 HOH A 34 6148 6148 HOH HOH . 
F 3 HOH A 35 6149 6149 HOH HOH . 
F 3 HOH A 36 6150 6150 HOH HOH . 
F 3 HOH A 37 6151 6151 HOH HOH . 
G 3 HOH B 1 6005 6005 HOH HOH . 
G 3 HOH B 2 6009 6009 HOH HOH . 
G 3 HOH B 3 6014 6014 HOH HOH . 
G 3 HOH B 4 6015 6015 HOH HOH . 
G 3 HOH B 5 6021 6021 HOH HOH . 
G 3 HOH B 6 6022 6022 HOH HOH . 
G 3 HOH B 7 6023 6023 HOH HOH . 
G 3 HOH B 8 6025 6025 HOH HOH . 
G 3 HOH B 9 6037 6037 HOH HOH . 
G 3 HOH B 10 6038 6038 HOH HOH . 
G 3 HOH B 11 6041 6041 HOH HOH . 
G 3 HOH B 12 6046 6046 HOH HOH . 
G 3 HOH B 13 6048 6048 HOH HOH . 
G 3 HOH B 14 6061 6061 HOH HOH . 
G 3 HOH B 15 6066 6066 HOH HOH . 
G 3 HOH B 16 6067 6067 HOH HOH . 
G 3 HOH B 17 6069 6069 HOH HOH . 
G 3 HOH B 18 6071 6071 HOH HOH . 
G 3 HOH B 19 6074 6074 HOH HOH . 
G 3 HOH B 20 6089 6089 HOH HOH . 
G 3 HOH B 21 6091 6091 HOH HOH . 
G 3 HOH B 22 6097 6097 HOH HOH . 
G 3 HOH B 23 6099 6099 HOH HOH . 
G 3 HOH B 24 6100 6100 HOH HOH . 
G 3 HOH B 25 6105 6105 HOH HOH . 
G 3 HOH B 26 6106 6106 HOH HOH . 
G 3 HOH B 27 6117 6117 HOH HOH . 
G 3 HOH B 28 6122 6122 HOH HOH . 
G 3 HOH B 29 6123 6123 HOH HOH . 
G 3 HOH B 30 6125 6125 HOH HOH . 
G 3 HOH B 31 6126 6126 HOH HOH . 
G 3 HOH B 32 6129 6129 HOH HOH . 
G 3 HOH B 33 6130 6130 HOH HOH . 
G 3 HOH B 34 6133 6133 HOH HOH . 
G 3 HOH B 35 6134 6134 HOH HOH . 
G 3 HOH B 36 6137 6137 HOH HOH . 
G 3 HOH B 37 6138 6138 HOH HOH . 
G 3 HOH B 38 6146 6146 HOH HOH . 
G 3 HOH B 39 6147 6147 HOH HOH . 
H 3 HOH C 1 6001 6001 HOH HOH . 
H 3 HOH C 2 6003 6003 HOH HOH . 
H 3 HOH C 3 6008 6008 HOH HOH . 
H 3 HOH C 4 6017 6017 HOH HOH . 
H 3 HOH C 5 6019 6019 HOH HOH . 
H 3 HOH C 6 6020 6020 HOH HOH . 
H 3 HOH C 7 6024 6024 HOH HOH . 
H 3 HOH C 8 6027 6027 HOH HOH . 
H 3 HOH C 9 6029 6029 HOH HOH . 
H 3 HOH C 10 6030 6030 HOH HOH . 
H 3 HOH C 11 6033 6033 HOH HOH . 
H 3 HOH C 12 6036 6036 HOH HOH . 
H 3 HOH C 13 6040 6040 HOH HOH . 
H 3 HOH C 14 6054 6054 HOH HOH . 
H 3 HOH C 15 6056 6056 HOH HOH . 
H 3 HOH C 16 6060 6060 HOH HOH . 
H 3 HOH C 17 6062 6062 HOH HOH . 
H 3 HOH C 18 6064 6064 HOH HOH . 
H 3 HOH C 19 6068 6068 HOH HOH . 
H 3 HOH C 20 6070 6070 HOH HOH . 
H 3 HOH C 21 6073 6073 HOH HOH . 
H 3 HOH C 22 6081 6081 HOH HOH . 
H 3 HOH C 23 6083 6083 HOH HOH . 
H 3 HOH C 24 6086 6086 HOH HOH . 
H 3 HOH C 25 6087 6087 HOH HOH . 
H 3 HOH C 26 6093 6093 HOH HOH . 
H 3 HOH C 27 6096 6096 HOH HOH . 
H 3 HOH C 28 6102 6102 HOH HOH . 
H 3 HOH C 29 6103 6103 HOH HOH . 
H 3 HOH C 30 6104 6104 HOH HOH . 
H 3 HOH C 31 6107 6107 HOH HOH . 
H 3 HOH C 32 6108 6108 HOH HOH . 
H 3 HOH C 33 6113 6113 HOH HOH . 
H 3 HOH C 34 6118 6118 HOH HOH . 
H 3 HOH C 35 6119 6119 HOH HOH . 
H 3 HOH C 36 6120 6120 HOH HOH . 
H 3 HOH C 37 6124 6124 HOH HOH . 
H 3 HOH C 38 6128 6128 HOH HOH . 
H 3 HOH C 39 6132 6132 HOH HOH . 
H 3 HOH C 40 6142 6142 HOH HOH . 
I 3 HOH D 1 6002 6002 HOH HOH . 
I 3 HOH D 2 6004 6004 HOH HOH . 
I 3 HOH D 3 6007 6007 HOH HOH . 
I 3 HOH D 4 6011 6011 HOH HOH . 
I 3 HOH D 5 6016 6016 HOH HOH . 
I 3 HOH D 6 6026 6026 HOH HOH . 
I 3 HOH D 7 6039 6039 HOH HOH . 
I 3 HOH D 8 6044 6044 HOH HOH . 
I 3 HOH D 9 6050 6050 HOH HOH . 
I 3 HOH D 10 6051 6051 HOH HOH . 
I 3 HOH D 11 6052 6052 HOH HOH . 
I 3 HOH D 12 6055 6055 HOH HOH . 
I 3 HOH D 13 6057 6057 HOH HOH . 
I 3 HOH D 14 6059 6059 HOH HOH . 
I 3 HOH D 15 6063 6063 HOH HOH . 
I 3 HOH D 16 6076 6076 HOH HOH . 
I 3 HOH D 17 6082 6082 HOH HOH . 
I 3 HOH D 18 6085 6085 HOH HOH . 
I 3 HOH D 19 6088 6088 HOH HOH . 
I 3 HOH D 20 6090 6090 HOH HOH . 
I 3 HOH D 21 6092 6092 HOH HOH . 
I 3 HOH D 22 6094 6094 HOH HOH . 
I 3 HOH D 23 6098 6098 HOH HOH . 
I 3 HOH D 24 6109 6109 HOH HOH . 
I 3 HOH D 25 6110 6110 HOH HOH . 
I 3 HOH D 26 6115 6115 HOH HOH . 
I 3 HOH D 27 6116 6116 HOH HOH . 
I 3 HOH D 28 6121 6121 HOH HOH . 
I 3 HOH D 29 6127 6127 HOH HOH . 
I 3 HOH D 30 6131 6131 HOH HOH . 
I 3 HOH D 31 6135 6135 HOH HOH . 
I 3 HOH D 32 6136 6136 HOH HOH . 
I 3 HOH D 33 6139 6139 HOH HOH . 
I 3 HOH D 34 6144 6144 HOH HOH . 
I 3 HOH D 35 6145 6145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . E 2 12.592 5.766 24.008 1 56.64 ? C1 MRD 5011 A 1 
HETATM 2 C C2 MRD . . . E 2 13.096 6.941 24.816 1 51.07 ? C2 MRD 5011 A 1 
HETATM 3 O O2 MRD . . . E 2 13.942 7.703 23.963 1 41.01 ? O2 MRD 5011 A 1 
HETATM 4 C CM MRD . . . E 2 13.836 6.596 26.087 1 29.37 ? CM MRD 5011 A 1 
HETATM 5 C C3 MRD . . . E 2 11.77 7.642 25.114 1 45.8 ? C3 MRD 5011 A 1 
HETATM 6 C C4 MRD . . . E 2 10.929 8.049 23.891 1 39.63 ? C4 MRD 5011 A 1 
HETATM 7 O O4 MRD . . . E 2 11.236 9.425 23.596 1 44.33 ? O4 MRD 5011 A 1 
HETATM 8 C C5 MRD . . . E 2 9.445 8.044 24.257 1 50.88 ? C5 MRD 5011 A 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#