data_1NC1
#
_model_server_result.job_id            v3eYMyIhA9gilj_C1X9pkw 
_model_server_result.datetime_utc      '2024-11-24 20:33:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nc1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":234}' 
#
_entry.id    1NC1 
#
_exptl.entry_id    1NC1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              296.345 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NC1 
_cell.length_a            51.3 
_cell.length_b            69.3 
_cell.length_c            127.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NC1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H16 N4 O3 S' 
_chem_comp.formula_weight    296.345 
_chem_comp.id                MTH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5'-DEOXY-5'-(METHYLTHIO)-TUBERCIDIN" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTH sing 237 n n 
CS HCS1 MTH sing 238 n n 
CS HCS2 MTH sing 239 n n 
CS HCS3 MTH sing 240 n n 
S5' C5' MTH sing 241 n n 
C5' C4' MTH sing 242 n n 
C5' "H5'1" MTH sing 243 n n 
C5' "H5'2" MTH sing 244 n n 
C4' O4' MTH sing 245 n n 
C4' C3' MTH sing 246 n n 
C4' "H4'1" MTH sing 247 n n 
O4' C1' MTH sing 248 n n 
C2' O2' MTH sing 249 n n 
C2' C3' MTH sing 250 n n 
C2' C1' MTH sing 251 n n 
C2' "H2'1" MTH sing 252 n n 
O2' HO21 MTH sing 253 n n 
C3' O3' MTH sing 254 n n 
C3' "H3'1" MTH sing 255 n n 
O3' HO31 MTH sing 256 n n 
C1' N9 MTH sing 257 n n 
C1' "H1'1" MTH sing 258 n n 
N9 C8 MTH sing 259 n y 
N9 C4 MTH sing 260 n y 
C8 C7 MTH doub 261 n y 
C8 HC81 MTH sing 262 n n 
C7 C5 MTH sing 263 n y 
C7 HC71 MTH sing 264 n n 
C5 C6 MTH doub 265 n y 
C5 C4 MTH sing 266 n y 
C6 N6 MTH sing 267 n n 
C6 N1 MTH sing 268 n y 
N6 HN61 MTH sing 269 n n 
N6 HN62 MTH sing 270 n n 
N1 C2 MTH doub 271 n y 
C2 N3 MTH sing 272 n y 
C2 HC21 MTH sing 273 n n 
N3 C4 MTH doub 274 n y 
#
_atom_sites.entry_id                     1NC1 
_atom_sites.fract_transf_matrix[1][1]    0.019493 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MTH A 1 233 233 MTH MTH . 
D 2 MTH B 1 234 234 MTH MTH . 
E 3 HOH A 1 234 1 HOH HOH . 
E 3 HOH A 2 235 2 HOH HOH . 
E 3 HOH A 3 236 3 HOH HOH . 
E 3 HOH A 4 237 4 HOH HOH . 
E 3 HOH A 5 238 5 HOH HOH . 
E 3 HOH A 6 239 6 HOH HOH . 
E 3 HOH A 7 240 7 HOH HOH . 
E 3 HOH A 8 241 8 HOH HOH . 
E 3 HOH A 9 242 9 HOH HOH . 
E 3 HOH A 10 243 10 HOH HOH . 
E 3 HOH A 11 244 11 HOH HOH . 
E 3 HOH A 12 245 12 HOH HOH . 
E 3 HOH A 13 246 13 HOH HOH . 
E 3 HOH A 14 247 14 HOH HOH . 
E 3 HOH A 15 248 15 HOH HOH . 
E 3 HOH A 16 249 16 HOH HOH . 
E 3 HOH A 17 250 17 HOH HOH . 
E 3 HOH A 18 251 18 HOH HOH . 
E 3 HOH A 19 252 19 HOH HOH . 
E 3 HOH A 20 253 21 HOH HOH . 
E 3 HOH A 21 254 22 HOH HOH . 
E 3 HOH A 22 255 23 HOH HOH . 
E 3 HOH A 23 256 24 HOH HOH . 
E 3 HOH A 24 257 25 HOH HOH . 
E 3 HOH A 25 258 26 HOH HOH . 
E 3 HOH A 26 259 27 HOH HOH . 
E 3 HOH A 27 260 28 HOH HOH . 
E 3 HOH A 28 261 29 HOH HOH . 
E 3 HOH A 29 262 30 HOH HOH . 
E 3 HOH A 30 263 31 HOH HOH . 
E 3 HOH A 31 264 32 HOH HOH . 
E 3 HOH A 32 265 33 HOH HOH . 
E 3 HOH A 33 266 34 HOH HOH . 
E 3 HOH A 34 267 35 HOH HOH . 
E 3 HOH A 35 268 36 HOH HOH . 
E 3 HOH A 36 269 37 HOH HOH . 
E 3 HOH A 37 270 39 HOH HOH . 
E 3 HOH A 38 271 40 HOH HOH . 
E 3 HOH A 39 272 41 HOH HOH . 
E 3 HOH A 40 273 42 HOH HOH . 
E 3 HOH A 41 274 43 HOH HOH . 
E 3 HOH A 42 275 44 HOH HOH . 
E 3 HOH A 43 276 45 HOH HOH . 
E 3 HOH A 44 277 46 HOH HOH . 
E 3 HOH A 45 278 47 HOH HOH . 
E 3 HOH A 46 279 48 HOH HOH . 
E 3 HOH A 47 280 49 HOH HOH . 
E 3 HOH A 48 281 50 HOH HOH . 
E 3 HOH A 49 282 51 HOH HOH . 
E 3 HOH A 50 283 52 HOH HOH . 
E 3 HOH A 51 284 53 HOH HOH . 
E 3 HOH A 52 285 54 HOH HOH . 
E 3 HOH A 53 286 55 HOH HOH . 
E 3 HOH A 54 287 56 HOH HOH . 
E 3 HOH A 55 288 57 HOH HOH . 
E 3 HOH A 56 289 58 HOH HOH . 
E 3 HOH A 57 290 59 HOH HOH . 
E 3 HOH A 58 291 60 HOH HOH . 
E 3 HOH A 59 292 61 HOH HOH . 
E 3 HOH A 60 293 62 HOH HOH . 
E 3 HOH A 61 294 63 HOH HOH . 
E 3 HOH A 62 295 64 HOH HOH . 
E 3 HOH A 63 296 65 HOH HOH . 
E 3 HOH A 64 297 66 HOH HOH . 
E 3 HOH A 65 298 67 HOH HOH . 
E 3 HOH A 66 299 68 HOH HOH . 
E 3 HOH A 67 300 69 HOH HOH . 
E 3 HOH A 68 301 70 HOH HOH . 
E 3 HOH A 69 302 71 HOH HOH . 
E 3 HOH A 70 303 72 HOH HOH . 
E 3 HOH A 71 304 73 HOH HOH . 
E 3 HOH A 72 305 74 HOH HOH . 
E 3 HOH A 73 306 75 HOH HOH . 
E 3 HOH A 74 307 76 HOH HOH . 
E 3 HOH A 75 308 77 HOH HOH . 
E 3 HOH A 76 309 78 HOH HOH . 
E 3 HOH A 77 310 79 HOH HOH . 
E 3 HOH A 78 311 80 HOH HOH . 
E 3 HOH A 79 312 81 HOH HOH . 
E 3 HOH A 80 313 82 HOH HOH . 
E 3 HOH A 81 314 83 HOH HOH . 
E 3 HOH A 82 315 84 HOH HOH . 
E 3 HOH A 83 316 85 HOH HOH . 
E 3 HOH A 84 317 86 HOH HOH . 
E 3 HOH A 85 318 87 HOH HOH . 
E 3 HOH A 86 319 88 HOH HOH . 
E 3 HOH A 87 320 89 HOH HOH . 
E 3 HOH A 88 321 90 HOH HOH . 
E 3 HOH A 89 322 91 HOH HOH . 
E 3 HOH A 90 323 92 HOH HOH . 
E 3 HOH A 91 324 93 HOH HOH . 
E 3 HOH A 92 325 94 HOH HOH . 
E 3 HOH A 93 326 95 HOH HOH . 
E 3 HOH A 94 327 107 HOH HOH . 
E 3 HOH A 95 328 182 HOH HOH . 
F 3 HOH B 1 235 20 HOH HOH . 
F 3 HOH B 2 236 38 HOH HOH . 
F 3 HOH B 3 237 101 HOH HOH . 
F 3 HOH B 4 238 102 HOH HOH . 
F 3 HOH B 5 239 103 HOH HOH . 
F 3 HOH B 6 240 104 HOH HOH . 
F 3 HOH B 7 241 105 HOH HOH . 
F 3 HOH B 8 242 106 HOH HOH . 
F 3 HOH B 9 243 108 HOH HOH . 
F 3 HOH B 10 244 109 HOH HOH . 
F 3 HOH B 11 245 110 HOH HOH . 
F 3 HOH B 12 246 111 HOH HOH . 
F 3 HOH B 13 247 112 HOH HOH . 
F 3 HOH B 14 248 113 HOH HOH . 
F 3 HOH B 15 249 114 HOH HOH . 
F 3 HOH B 16 250 115 HOH HOH . 
F 3 HOH B 17 251 116 HOH HOH . 
F 3 HOH B 18 252 117 HOH HOH . 
F 3 HOH B 19 253 118 HOH HOH . 
F 3 HOH B 20 254 119 HOH HOH . 
F 3 HOH B 21 255 120 HOH HOH . 
F 3 HOH B 22 256 121 HOH HOH . 
F 3 HOH B 23 257 122 HOH HOH . 
F 3 HOH B 24 258 123 HOH HOH . 
F 3 HOH B 25 259 124 HOH HOH . 
F 3 HOH B 26 260 125 HOH HOH . 
F 3 HOH B 27 261 126 HOH HOH . 
F 3 HOH B 28 262 127 HOH HOH . 
F 3 HOH B 29 263 128 HOH HOH . 
F 3 HOH B 30 264 129 HOH HOH . 
F 3 HOH B 31 265 130 HOH HOH . 
F 3 HOH B 32 266 131 HOH HOH . 
F 3 HOH B 33 267 132 HOH HOH . 
F 3 HOH B 34 268 133 HOH HOH . 
F 3 HOH B 35 269 134 HOH HOH . 
F 3 HOH B 36 270 135 HOH HOH . 
F 3 HOH B 37 271 136 HOH HOH . 
F 3 HOH B 38 272 137 HOH HOH . 
F 3 HOH B 39 273 138 HOH HOH . 
F 3 HOH B 40 274 139 HOH HOH . 
F 3 HOH B 41 275 140 HOH HOH . 
F 3 HOH B 42 276 141 HOH HOH . 
F 3 HOH B 43 277 142 HOH HOH . 
F 3 HOH B 44 278 143 HOH HOH . 
F 3 HOH B 45 279 144 HOH HOH . 
F 3 HOH B 46 280 145 HOH HOH . 
F 3 HOH B 47 281 146 HOH HOH . 
F 3 HOH B 48 282 147 HOH HOH . 
F 3 HOH B 49 283 148 HOH HOH . 
F 3 HOH B 50 284 149 HOH HOH . 
F 3 HOH B 51 285 151 HOH HOH . 
F 3 HOH B 52 286 152 HOH HOH . 
F 3 HOH B 53 287 153 HOH HOH . 
F 3 HOH B 54 288 154 HOH HOH . 
F 3 HOH B 55 289 155 HOH HOH . 
F 3 HOH B 56 290 156 HOH HOH . 
F 3 HOH B 57 291 157 HOH HOH . 
F 3 HOH B 58 292 158 HOH HOH . 
F 3 HOH B 59 293 159 HOH HOH . 
F 3 HOH B 60 294 160 HOH HOH . 
F 3 HOH B 61 295 161 HOH HOH . 
F 3 HOH B 62 296 162 HOH HOH . 
F 3 HOH B 63 297 163 HOH HOH . 
F 3 HOH B 64 298 164 HOH HOH . 
F 3 HOH B 65 299 165 HOH HOH . 
F 3 HOH B 66 300 166 HOH HOH . 
F 3 HOH B 67 301 167 HOH HOH . 
F 3 HOH B 68 302 168 HOH HOH . 
F 3 HOH B 69 303 169 HOH HOH . 
F 3 HOH B 70 304 170 HOH HOH . 
F 3 HOH B 71 305 171 HOH HOH . 
F 3 HOH B 72 306 172 HOH HOH . 
F 3 HOH B 73 307 173 HOH HOH . 
F 3 HOH B 74 308 174 HOH HOH . 
F 3 HOH B 75 309 175 HOH HOH . 
F 3 HOH B 76 310 176 HOH HOH . 
F 3 HOH B 77 311 177 HOH HOH . 
F 3 HOH B 78 312 178 HOH HOH . 
F 3 HOH B 79 313 179 HOH HOH . 
F 3 HOH B 80 314 180 HOH HOH . 
F 3 HOH B 81 315 181 HOH HOH . 
F 3 HOH B 82 316 183 HOH HOH . 
F 3 HOH B 83 317 184 HOH HOH . 
F 3 HOH B 84 318 185 HOH HOH . 
F 3 HOH B 85 319 186 HOH HOH . 
F 3 HOH B 86 320 187 HOH HOH . 
F 3 HOH B 87 321 188 HOH HOH . 
F 3 HOH B 88 322 189 HOH HOH . 
F 3 HOH B 89 323 190 HOH HOH . 
F 3 HOH B 90 324 191 HOH HOH . 
F 3 HOH B 91 325 192 HOH HOH . 
F 3 HOH B 92 326 193 HOH HOH . 
F 3 HOH B 93 327 194 HOH HOH . 
F 3 HOH B 94 328 195 HOH HOH . 
F 3 HOH B 95 329 196 HOH HOH . 
F 3 HOH B 96 330 197 HOH HOH . 
F 3 HOH B 97 331 198 HOH HOH . 
F 3 HOH B 98 332 199 HOH HOH . 
F 3 HOH B 99 333 200 HOH HOH . 
F 3 HOH B 100 334 201 HOH HOH . 
F 3 HOH B 101 335 202 HOH HOH . 
F 3 HOH B 102 336 203 HOH HOH . 
F 3 HOH B 103 337 204 HOH HOH . 
F 3 HOH B 104 338 205 HOH HOH . 
F 3 HOH B 105 339 206 HOH HOH . 
F 3 HOH B 106 340 207 HOH HOH . 
F 3 HOH B 107 341 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTH . . . D 2 47.375 90.615 40.666 1 23.42 ? CS MTH 234 B 1 
HETATM 2 S S5' MTH . . . D 2 47.273 88.986 39.833 1 22.77 ? S5' MTH 234 B 1 
HETATM 3 C C5' MTH . . . D 2 46.604 88.013 41.237 1 20.45 ? C5' MTH 234 B 1 
HETATM 4 C C4' MTH . . . D 2 47.67 87.609 42.272 1 18.35 ? C4' MTH 234 B 1 
HETATM 5 O O4' MTH . . . D 2 47.006 87.088 43.491 1 20.41 ? O4' MTH 234 B 1 
HETATM 6 C C2' MTH . . . D 2 47.767 85.201 42.251 1 15 ? C2' MTH 234 B 1 
HETATM 7 O O2' MTH . . . D 2 48.634 84.109 42.648 1 14.48 ? O2' MTH 234 B 1 
HETATM 8 C C3' MTH . . . D 2 48.608 86.504 41.823 1 17.33 ? C3' MTH 234 B 1 
HETATM 9 O O3' MTH . . . D 2 49.882 86.58 42.591 1 14.84 ? O3' MTH 234 B 1 
HETATM 10 C C1' MTH . . . D 2 46.758 85.621 43.399 1 17.59 ? C1' MTH 234 B 1 
HETATM 11 N N9 MTH . . . D 2 45.201 85.493 43.11 1 18.96 ? N9 MTH 234 B 1 
HETATM 12 C C8 MTH . . . D 2 44.209 85.832 44.028 1 16.84 ? C8 MTH 234 B 1 
HETATM 13 C C7 MTH . . . D 2 42.978 85.677 43.57 1 17.1 ? C7 MTH 234 B 1 
HETATM 14 C C5 MTH . . . D 2 43.164 85.21 42.271 1 16.51 ? C5 MTH 234 B 1 
HETATM 15 C C6 MTH . . . D 2 42.269 84.867 41.224 1 13.07 ? C6 MTH 234 B 1 
HETATM 16 N N6 MTH . . . D 2 40.963 84.971 41.377 1 15.73 ? N6 MTH 234 B 1 
HETATM 17 N N1 MTH . . . D 2 42.812 84.423 40.022 1 15.39 ? N1 MTH 234 B 1 
HETATM 18 C C2 MTH . . . D 2 44.156 84.327 39.866 1 14.99 ? C2 MTH 234 B 1 
HETATM 19 N N3 MTH . . . D 2 45.099 84.639 40.793 1 14.66 ? N3 MTH 234 B 1 
HETATM 20 C C4 MTH . . . D 2 44.519 85.076 41.975 1 16.66 ? C4 MTH 234 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#