data_1NC3
#
_model_server_result.job_id            KfAYzLDF6MbQ4QCJRUvYXA 
_model_server_result.datetime_utc      '2024-11-08 04:40:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":234}' 
#
_entry.id    1NC3 
#
_exptl.entry_id    1NC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NC3 
_cell.length_a            51.1 
_cell.length_b            69.7 
_cell.length_c            127.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                FMC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMC doub 83 n y 
N1 C6 FMC sing 84 n y 
C2 N3 FMC sing 85 n y 
C2 H2 FMC sing 86 n n 
N3 C4 FMC doub 87 n y 
C4 C5 FMC sing 88 n y 
C4 C9 FMC sing 89 n y 
C5 C6 FMC doub 90 n y 
C5 N7 FMC sing 91 n y 
C6 N6 FMC sing 92 n n 
N6 HN6 FMC sing 93 n n 
N6 HN6A FMC sing 94 n n 
N7 N8 FMC sing 95 n y 
N7 HN7 FMC sing 96 n n 
N8 C9 FMC doub 97 n y 
C9 C1' FMC sing 98 n n 
C1' C2' FMC sing 99 n n 
C1' O4' FMC sing 100 n n 
C1' H1' FMC sing 101 n n 
C2' O2' FMC sing 102 n n 
C2' C3' FMC sing 103 n n 
C2' H2' FMC sing 104 n n 
O2' HO2' FMC sing 105 n n 
C3' O3' FMC sing 106 n n 
C3' C4' FMC sing 107 n n 
C3' H3' FMC sing 108 n n 
O3' HO3' FMC sing 109 n n 
C4' O4' FMC sing 110 n n 
C4' C5' FMC sing 111 n n 
C4' H4' FMC sing 112 n n 
C5' O5' FMC sing 113 n n 
C5' H5' FMC sing 114 n n 
C5' "H5'A" FMC sing 115 n n 
O5' HO5' FMC sing 116 n n 
#
_atom_sites.entry_id                     1NC3 
_atom_sites.fract_transf_matrix[1][1]    0.019569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMC A 1 233 233 FMC FMA . 
D 2 FMC B 1 234 233 FMC FMA . 
E 3 HOH A 1 234 1 HOH WAT . 
E 3 HOH A 2 235 2 HOH WAT . 
E 3 HOH A 3 236 3 HOH WAT . 
E 3 HOH A 4 237 4 HOH WAT . 
E 3 HOH A 5 238 5 HOH WAT . 
E 3 HOH A 6 239 6 HOH WAT . 
E 3 HOH A 7 240 7 HOH WAT . 
E 3 HOH A 8 241 8 HOH WAT . 
E 3 HOH A 9 242 9 HOH WAT . 
E 3 HOH A 10 243 10 HOH WAT . 
E 3 HOH A 11 244 11 HOH WAT . 
E 3 HOH A 12 245 12 HOH WAT . 
E 3 HOH A 13 246 13 HOH WAT . 
E 3 HOH A 14 247 14 HOH WAT . 
E 3 HOH A 15 248 15 HOH WAT . 
E 3 HOH A 16 249 16 HOH WAT . 
E 3 HOH A 17 250 17 HOH WAT . 
E 3 HOH A 18 251 18 HOH WAT . 
E 3 HOH A 19 252 19 HOH WAT . 
E 3 HOH A 20 253 20 HOH WAT . 
E 3 HOH A 21 254 21 HOH WAT . 
E 3 HOH A 22 255 22 HOH WAT . 
E 3 HOH A 23 256 23 HOH WAT . 
E 3 HOH A 24 257 24 HOH WAT . 
E 3 HOH A 25 258 26 HOH WAT . 
E 3 HOH A 26 259 27 HOH WAT . 
E 3 HOH A 27 260 28 HOH WAT . 
E 3 HOH A 28 261 29 HOH WAT . 
E 3 HOH A 29 262 30 HOH WAT . 
E 3 HOH A 30 263 31 HOH WAT . 
E 3 HOH A 31 264 32 HOH WAT . 
E 3 HOH A 32 265 34 HOH WAT . 
E 3 HOH A 33 266 35 HOH WAT . 
E 3 HOH A 34 267 36 HOH WAT . 
E 3 HOH A 35 268 37 HOH WAT . 
E 3 HOH A 36 269 38 HOH WAT . 
E 3 HOH A 37 270 39 HOH WAT . 
E 3 HOH A 38 271 40 HOH WAT . 
E 3 HOH A 39 272 41 HOH WAT . 
E 3 HOH A 40 273 42 HOH WAT . 
E 3 HOH A 41 274 43 HOH WAT . 
E 3 HOH A 42 275 44 HOH WAT . 
E 3 HOH A 43 276 45 HOH WAT . 
E 3 HOH A 44 277 46 HOH WAT . 
E 3 HOH A 45 278 48 HOH WAT . 
E 3 HOH A 46 279 49 HOH WAT . 
E 3 HOH A 47 280 50 HOH WAT . 
E 3 HOH A 48 281 51 HOH WAT . 
E 3 HOH A 49 282 52 HOH WAT . 
E 3 HOH A 50 283 53 HOH WAT . 
E 3 HOH A 51 284 54 HOH WAT . 
E 3 HOH A 52 285 55 HOH WAT . 
E 3 HOH A 53 286 56 HOH WAT . 
E 3 HOH A 54 287 57 HOH WAT . 
E 3 HOH A 55 288 58 HOH WAT . 
E 3 HOH A 56 289 59 HOH WAT . 
E 3 HOH A 57 290 60 HOH WAT . 
E 3 HOH A 58 291 61 HOH WAT . 
E 3 HOH A 59 292 63 HOH WAT . 
E 3 HOH A 60 293 64 HOH WAT . 
E 3 HOH A 61 294 65 HOH WAT . 
E 3 HOH A 62 295 66 HOH WAT . 
E 3 HOH A 63 296 67 HOH WAT . 
E 3 HOH A 64 297 68 HOH WAT . 
E 3 HOH A 65 298 69 HOH WAT . 
E 3 HOH A 66 299 70 HOH WAT . 
E 3 HOH A 67 300 71 HOH WAT . 
E 3 HOH A 68 301 72 HOH WAT . 
E 3 HOH A 69 302 73 HOH WAT . 
E 3 HOH A 70 303 74 HOH WAT . 
E 3 HOH A 71 304 75 HOH WAT . 
E 3 HOH A 72 305 76 HOH WAT . 
E 3 HOH A 73 306 77 HOH WAT . 
E 3 HOH A 74 307 78 HOH WAT . 
E 3 HOH A 75 308 79 HOH WAT . 
E 3 HOH A 76 309 80 HOH WAT . 
E 3 HOH A 77 310 81 HOH WAT . 
E 3 HOH A 78 311 82 HOH WAT . 
E 3 HOH A 79 312 83 HOH WAT . 
E 3 HOH A 80 313 84 HOH WAT . 
E 3 HOH A 81 314 85 HOH WAT . 
E 3 HOH A 82 315 86 HOH WAT . 
E 3 HOH A 83 316 87 HOH WAT . 
E 3 HOH A 84 317 88 HOH WAT . 
E 3 HOH A 85 318 89 HOH WAT . 
E 3 HOH A 86 319 90 HOH WAT . 
E 3 HOH A 87 320 91 HOH WAT . 
E 3 HOH A 88 321 92 HOH WAT . 
E 3 HOH A 89 322 93 HOH WAT . 
E 3 HOH A 90 323 94 HOH WAT . 
E 3 HOH A 91 324 95 HOH WAT . 
E 3 HOH A 92 325 96 HOH WAT . 
E 3 HOH A 93 326 97 HOH WAT . 
E 3 HOH A 94 327 98 HOH WAT . 
E 3 HOH A 95 328 39 HOH WAT . 
E 3 HOH A 96 329 68 HOH WAT . 
E 3 HOH A 97 330 69 HOH WAT . 
F 3 HOH B 1 235 25 HOH WAT . 
F 3 HOH B 2 236 33 HOH WAT . 
F 3 HOH B 3 237 47 HOH WAT . 
F 3 HOH B 4 238 62 HOH WAT . 
F 3 HOH B 5 239 1 HOH WAT . 
F 3 HOH B 6 240 2 HOH WAT . 
F 3 HOH B 7 241 3 HOH WAT . 
F 3 HOH B 8 242 4 HOH WAT . 
F 3 HOH B 9 243 5 HOH WAT . 
F 3 HOH B 10 244 6 HOH WAT . 
F 3 HOH B 11 245 7 HOH WAT . 
F 3 HOH B 12 246 8 HOH WAT . 
F 3 HOH B 13 247 9 HOH WAT . 
F 3 HOH B 14 248 10 HOH WAT . 
F 3 HOH B 15 249 11 HOH WAT . 
F 3 HOH B 16 250 12 HOH WAT . 
F 3 HOH B 17 251 13 HOH WAT . 
F 3 HOH B 18 252 14 HOH WAT . 
F 3 HOH B 19 253 15 HOH WAT . 
F 3 HOH B 20 254 16 HOH WAT . 
F 3 HOH B 21 255 17 HOH WAT . 
F 3 HOH B 22 256 18 HOH WAT . 
F 3 HOH B 23 257 19 HOH WAT . 
F 3 HOH B 24 258 20 HOH WAT . 
F 3 HOH B 25 259 21 HOH WAT . 
F 3 HOH B 26 260 22 HOH WAT . 
F 3 HOH B 27 261 23 HOH WAT . 
F 3 HOH B 28 262 24 HOH WAT . 
F 3 HOH B 29 263 25 HOH WAT . 
F 3 HOH B 30 264 26 HOH WAT . 
F 3 HOH B 31 265 27 HOH WAT . 
F 3 HOH B 32 266 28 HOH WAT . 
F 3 HOH B 33 267 29 HOH WAT . 
F 3 HOH B 34 268 30 HOH WAT . 
F 3 HOH B 35 269 31 HOH WAT . 
F 3 HOH B 36 270 32 HOH WAT . 
F 3 HOH B 37 271 33 HOH WAT . 
F 3 HOH B 38 272 34 HOH WAT . 
F 3 HOH B 39 273 35 HOH WAT . 
F 3 HOH B 40 274 36 HOH WAT . 
F 3 HOH B 41 275 37 HOH WAT . 
F 3 HOH B 42 276 38 HOH WAT . 
F 3 HOH B 43 277 40 HOH WAT . 
F 3 HOH B 44 278 41 HOH WAT . 
F 3 HOH B 45 279 42 HOH WAT . 
F 3 HOH B 46 280 43 HOH WAT . 
F 3 HOH B 47 281 44 HOH WAT . 
F 3 HOH B 48 282 45 HOH WAT . 
F 3 HOH B 49 283 46 HOH WAT . 
F 3 HOH B 50 284 47 HOH WAT . 
F 3 HOH B 51 285 48 HOH WAT . 
F 3 HOH B 52 286 49 HOH WAT . 
F 3 HOH B 53 287 50 HOH WAT . 
F 3 HOH B 54 288 51 HOH WAT . 
F 3 HOH B 55 289 52 HOH WAT . 
F 3 HOH B 56 290 53 HOH WAT . 
F 3 HOH B 57 291 54 HOH WAT . 
F 3 HOH B 58 292 55 HOH WAT . 
F 3 HOH B 59 293 56 HOH WAT . 
F 3 HOH B 60 294 57 HOH WAT . 
F 3 HOH B 61 295 58 HOH WAT . 
F 3 HOH B 62 296 59 HOH WAT . 
F 3 HOH B 63 297 60 HOH WAT . 
F 3 HOH B 64 298 61 HOH WAT . 
F 3 HOH B 65 299 62 HOH WAT . 
F 3 HOH B 66 300 63 HOH WAT . 
F 3 HOH B 67 301 64 HOH WAT . 
F 3 HOH B 68 302 65 HOH WAT . 
F 3 HOH B 69 303 66 HOH WAT . 
F 3 HOH B 70 304 67 HOH WAT . 
F 3 HOH B 71 305 70 HOH WAT . 
F 3 HOH B 72 306 71 HOH WAT . 
F 3 HOH B 73 307 72 HOH WAT . 
F 3 HOH B 74 308 73 HOH WAT . 
F 3 HOH B 75 309 74 HOH WAT . 
F 3 HOH B 76 310 75 HOH WAT . 
F 3 HOH B 77 311 76 HOH WAT . 
F 3 HOH B 78 312 77 HOH WAT . 
F 3 HOH B 79 313 78 HOH WAT . 
F 3 HOH B 80 314 79 HOH WAT . 
F 3 HOH B 81 315 80 HOH WAT . 
F 3 HOH B 82 316 81 HOH WAT . 
F 3 HOH B 83 317 82 HOH WAT . 
F 3 HOH B 84 318 83 HOH WAT . 
F 3 HOH B 85 319 84 HOH WAT . 
F 3 HOH B 86 320 85 HOH WAT . 
F 3 HOH B 87 321 86 HOH WAT . 
F 3 HOH B 88 322 87 HOH WAT . 
F 3 HOH B 89 323 88 HOH WAT . 
F 3 HOH B 90 324 89 HOH WAT . 
F 3 HOH B 91 325 90 HOH WAT . 
F 3 HOH B 92 326 91 HOH WAT . 
F 3 HOH B 93 327 92 HOH WAT . 
F 3 HOH B 94 328 93 HOH WAT . 
F 3 HOH B 95 329 94 HOH WAT . 
F 3 HOH B 96 330 95 HOH WAT . 
F 3 HOH B 97 331 96 HOH WAT . 
F 3 HOH B 98 332 97 HOH WAT . 
F 3 HOH B 99 333 98 HOH WAT . 
F 3 HOH B 100 334 99 HOH WAT . 
F 3 HOH B 101 335 100 HOH WAT . 
F 3 HOH B 102 336 101 HOH WAT . 
F 3 HOH B 103 337 102 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMC . . . D 2 42.5 50.102 39.822 1 14.7 ? N1 FMC 234 B 1 
HETATM 2 C C2 FMC . . . D 2 43.86 49.983 39.678 1 17.34 ? C2 FMC 234 B 1 
HETATM 3 N N3 FMC . . . D 2 44.793 50.29 40.633 1 18.18 ? N3 FMC 234 B 1 
HETATM 4 C C4 FMC . . . D 2 44.22 50.755 41.858 1 15.45 ? C4 FMC 234 B 1 
HETATM 5 C C5 FMC . . . D 2 42.821 50.89 42.069 1 14.11 ? C5 FMC 234 B 1 
HETATM 6 C C6 FMC . . . D 2 41.915 50.555 40.995 1 15.03 ? C6 FMC 234 B 1 
HETATM 7 N N6 FMC . . . D 2 40.565 50.68 41.117 1 12.13 ? N6 FMC 234 B 1 
HETATM 8 N N7 FMC . . . D 2 42.625 51.352 43.342 1 16.05 ? N7 FMC 234 B 1 
HETATM 9 N N8 FMC . . . D 2 43.856 51.535 43.97 1 19.14 ? N8 FMC 234 B 1 
HETATM 10 C C9 FMC . . . D 2 44.841 51.193 43.101 1 18.7 ? C9 FMC 234 B 1 
HETATM 11 C C1' FMC . . . D 2 46.37 51.319 43.471 1 21.64 ? C1' FMC 234 B 1 
HETATM 12 C C2' FMC . . . D 2 47.524 50.867 42.511 1 22.2 ? C2' FMC 234 B 1 
HETATM 13 O O2' FMC . . . D 2 48.346 49.812 42.924 1 22.18 ? O2' FMC 234 B 1 
HETATM 14 C C3' FMC . . . D 2 48.321 52.134 42.235 1 21.7 ? C3' FMC 234 B 1 
HETATM 15 O O3' FMC . . . D 2 49.491 52.061 43.059 1 19.84 ? O3' FMC 234 B 1 
HETATM 16 C C4' FMC . . . D 2 47.415 53.359 42.565 1 24.96 ? C4' FMC 234 B 1 
HETATM 17 O O4' FMC . . . D 2 46.61 52.751 43.666 1 23.47 ? O4' FMC 234 B 1 
HETATM 18 C C5' FMC . . . D 2 46.427 53.848 41.396 1 27.77 ? C5' FMC 234 B 1 
HETATM 19 O O5' FMC . . . D 2 47.032 54.431 40.255 1 31.7 ? O5' FMC 234 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#