data_1NC9 # _model_server_result.job_id dlCaaxUlXfAvj0GwbEijaQ _model_server_result.datetime_utc '2024-11-14 16:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5100}' # _entry.id 1NC9 # _exptl.entry_id 1NC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-IMINOBIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99 _cell.angle_gamma 90 _cell.entry_id 1NC9 _cell.length_a 58.4 _cell.length_b 87.3 _cell.length_c 47.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O2 S' _chem_comp.formula_weight 243.326 _chem_comp.id IMI _chem_comp.mon_nstd_flag . _chem_comp.name 2-IMINOBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 IMI doub 160 n n C11 O12 IMI sing 161 n n C11 C10 IMI sing 162 n n O12 HO2 IMI sing 163 n n C10 C9 IMI sing 164 n n C10 H101 IMI sing 165 n n C10 H102 IMI sing 166 n n C9 C8 IMI sing 167 n n C9 H91 IMI sing 168 n n C9 H92 IMI sing 169 n n C8 C7 IMI sing 170 n n C8 H81 IMI sing 171 n n C8 H82 IMI sing 172 n n C7 C2 IMI sing 173 n n C7 H71 IMI sing 174 n n C7 H72 IMI sing 175 n n C2 S1 IMI sing 176 n n C2 C4 IMI sing 177 n n C2 H2 IMI sing 178 n n S1 C6 IMI sing 179 n n C6 C5 IMI sing 180 n n C6 H61 IMI sing 181 n n C6 H62 IMI sing 182 n n C5 N1 IMI sing 183 n n C5 C4 IMI sing 184 n n C5 H5 IMI sing 185 n n N1 C3 IMI sing 186 n n N1 HN1 IMI sing 187 n n C3 N3 IMI doub 188 n n C3 N2 IMI sing 189 n n N3 HN3 IMI sing 190 n n N2 C4 IMI sing 191 n n N2 HN2 IMI sing 192 n n C4 H4 IMI sing 193 n n # _atom_sites.entry_id 1NC9 _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002712 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMI A 1 5100 5100 IMI IMI . F 3 HOH A 1 6007 6007 HOH HOH . F 3 HOH A 2 6008 6008 HOH HOH . F 3 HOH A 3 6011 6011 HOH HOH . F 3 HOH A 4 6021 6021 HOH HOH . F 3 HOH A 5 6022 6022 HOH HOH . F 3 HOH A 6 6023 6023 HOH HOH . F 3 HOH A 7 6029 6029 HOH HOH . F 3 HOH A 8 6030 6030 HOH HOH . F 3 HOH A 9 6031 6031 HOH HOH . F 3 HOH A 10 6034 6034 HOH HOH . F 3 HOH A 11 6037 6037 HOH HOH . F 3 HOH A 12 6041 6041 HOH HOH . F 3 HOH A 13 6042 6042 HOH HOH . F 3 HOH A 14 6043 6043 HOH HOH . F 3 HOH A 15 6045 6045 HOH HOH . F 3 HOH A 16 6057 6057 HOH HOH . F 3 HOH A 17 6058 6058 HOH HOH . F 3 HOH A 18 6060 6060 HOH HOH . F 3 HOH A 19 6061 6061 HOH HOH . F 3 HOH A 20 6066 6066 HOH HOH . F 3 HOH A 21 6067 6067 HOH HOH . F 3 HOH A 22 6070 6070 HOH HOH . F 3 HOH A 23 6075 6075 HOH HOH . F 3 HOH A 24 6078 6078 HOH HOH . F 3 HOH A 25 6082 6082 HOH HOH . F 3 HOH A 26 6088 6088 HOH HOH . F 3 HOH A 27 6094 6094 HOH HOH . G 3 HOH B 1 6001 6001 HOH HOH . G 3 HOH B 2 6010 6010 HOH HOH . G 3 HOH B 3 6013 6013 HOH HOH . G 3 HOH B 4 6016 6016 HOH HOH . G 3 HOH B 5 6017 6017 HOH HOH . G 3 HOH B 6 6026 6026 HOH HOH . G 3 HOH B 7 6028 6028 HOH HOH . G 3 HOH B 8 6032 6032 HOH HOH . G 3 HOH B 9 6038 6038 HOH HOH . G 3 HOH B 10 6039 6039 HOH HOH . G 3 HOH B 11 6044 6044 HOH HOH . G 3 HOH B 12 6047 6047 HOH HOH . G 3 HOH B 13 6049 6049 HOH HOH . G 3 HOH B 14 6054 6054 HOH HOH . G 3 HOH B 15 6055 6055 HOH HOH . G 3 HOH B 16 6059 6059 HOH HOH . G 3 HOH B 17 6071 6071 HOH HOH . G 3 HOH B 18 6076 6076 HOH HOH . G 3 HOH B 19 6081 6081 HOH HOH . G 3 HOH B 20 6083 6083 HOH HOH . G 3 HOH B 21 6090 6090 HOH HOH . G 3 HOH B 22 6091 6091 HOH HOH . G 3 HOH B 23 6100 6100 HOH HOH . H 3 HOH C 1 6004 6004 HOH HOH . H 3 HOH C 2 6006 6006 HOH HOH . H 3 HOH C 3 6009 6009 HOH HOH . H 3 HOH C 4 6014 6014 HOH HOH . H 3 HOH C 5 6018 6018 HOH HOH . H 3 HOH C 6 6019 6019 HOH HOH . H 3 HOH C 7 6020 6020 HOH HOH . H 3 HOH C 8 6024 6024 HOH HOH . H 3 HOH C 9 6025 6025 HOH HOH . H 3 HOH C 10 6027 6027 HOH HOH . H 3 HOH C 11 6033 6033 HOH HOH . H 3 HOH C 12 6036 6036 HOH HOH . H 3 HOH C 13 6040 6040 HOH HOH . H 3 HOH C 14 6046 6046 HOH HOH . H 3 HOH C 15 6053 6053 HOH HOH . H 3 HOH C 16 6064 6064 HOH HOH . H 3 HOH C 17 6065 6065 HOH HOH . H 3 HOH C 18 6069 6069 HOH HOH . H 3 HOH C 19 6072 6072 HOH HOH . H 3 HOH C 20 6073 6073 HOH HOH . H 3 HOH C 21 6077 6077 HOH HOH . H 3 HOH C 22 6080 6080 HOH HOH . H 3 HOH C 23 6084 6084 HOH HOH . H 3 HOH C 24 6099 6099 HOH HOH . H 3 HOH C 25 6101 6101 HOH HOH . I 3 HOH D 1 6002 6002 HOH HOH . I 3 HOH D 2 6003 6003 HOH HOH . I 3 HOH D 3 6005 6005 HOH HOH . I 3 HOH D 4 6012 6012 HOH HOH . I 3 HOH D 5 6015 6015 HOH HOH . I 3 HOH D 6 6035 6035 HOH HOH . I 3 HOH D 7 6048 6048 HOH HOH . I 3 HOH D 8 6050 6050 HOH HOH . I 3 HOH D 9 6051 6051 HOH HOH . I 3 HOH D 10 6052 6052 HOH HOH . I 3 HOH D 11 6056 6056 HOH HOH . I 3 HOH D 12 6062 6062 HOH HOH . I 3 HOH D 13 6063 6063 HOH HOH . I 3 HOH D 14 6068 6068 HOH HOH . I 3 HOH D 15 6074 6074 HOH HOH . I 3 HOH D 16 6079 6079 HOH HOH . I 3 HOH D 17 6085 6085 HOH HOH . I 3 HOH D 18 6086 6086 HOH HOH . I 3 HOH D 19 6087 6087 HOH HOH . I 3 HOH D 20 6089 6089 HOH HOH . I 3 HOH D 21 6092 6092 HOH HOH . I 3 HOH D 22 6093 6093 HOH HOH . I 3 HOH D 23 6095 6095 HOH HOH . I 3 HOH D 24 6096 6096 HOH HOH . I 3 HOH D 25 6097 6097 HOH HOH . I 3 HOH D 26 6098 6098 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 IMI . . . E 2 15.931 4.184 29.274 1 58.03 ? C11 IMI 5100 A 1 HETATM 2 O O11 IMI . . . E 2 14.79 4.085 29.801 1 56.34 ? O11 IMI 5100 A 1 HETATM 3 O O12 IMI . . . E 2 16.567 3.179 28.861 1 54.1 ? O12 IMI 5100 A 1 HETATM 4 C C10 IMI . . . E 2 16.481 5.564 29.167 1 55.71 ? C10 IMI 5100 A 1 HETATM 5 C C9 IMI . . . E 2 15.371 6.561 28.775 1 60.92 ? C9 IMI 5100 A 1 HETATM 6 C C8 IMI . . . E 2 14.63 6.051 27.529 1 59.48 ? C8 IMI 5100 A 1 HETATM 7 C C7 IMI . . . E 2 13.52 7.007 27.039 1 52.38 ? C7 IMI 5100 A 1 HETATM 8 C C2 IMI . . . E 2 12.86 6.753 25.704 1 44.45 ? C2 IMI 5100 A 1 HETATM 9 S S1 IMI . . . E 2 13.888 7.109 24.225 1 45.72 ? S1 IMI 5100 A 1 HETATM 10 C C6 IMI . . . E 2 12.405 6.935 23.172 1 39.38 ? C6 IMI 5100 A 1 HETATM 11 C C5 IMI . . . E 2 11.267 7.608 23.913 1 32.09 ? C5 IMI 5100 A 1 HETATM 12 N N1 IMI . . . E 2 11.186 9.045 23.69 1 34.74 ? N1 IMI 5100 A 1 HETATM 13 C C3 IMI . . . E 2 11.379 9.741 24.821 1 51.18 ? C3 IMI 5100 A 1 HETATM 14 N N3 IMI . . . E 2 11.326 10.983 24.978 1 44.98 ? N3 IMI 5100 A 1 HETATM 15 N N2 IMI . . . E 2 11.605 8.887 25.85 1 48.95 ? N2 IMI 5100 A 1 HETATM 16 C C4 IMI . . . E 2 11.559 7.497 25.423 1 38.07 ? C4 IMI 5100 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #