data_1NCA
#
_model_server_result.job_id            MFaWDJ0a1QbvFr-Pj7alFg 
_model_server_result.datetime_utc      '2024-11-25 17:11:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nca 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1}' 
#
_entry.id    1NCA 
#
_exptl.entry_id    1NCA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NCA 
_cell.length_a            167 
_cell.length_b            167 
_cell.length_c            124 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NCA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dodecameric 12 author_and_software_defined_assembly 1 
PISA eicosameric 20 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J 1 1,2,3,4 
A,C,D,E,F,G,H,J 2 1,2,3,4 
A,B,C,D,E,F,G,H,I,J 2 5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 167 0 0 
3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 83.5 -83.5 0 
4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 83.5 83.5 0 
5 'crystal symmetry operation' 5_547 -x+1/2,y-1/2,-z+2 -1 0 0 0 1 0 0 0 -1 83.5 -83.5 248 
6 'crystal symmetry operation' 6_557 x+1/2,-y+1/2,-z+2 1 0 0 0 -1 0 0 0 -1 83.5 83.5 248 
7 'crystal symmetry operation' 7_557 y,x,-z+2 0 1 0 1 0 0 0 0 -1 0 0 248 
8 'crystal symmetry operation' 8_657 -y+1,-x,-z+2 0 -1 0 -1 0 0 0 0 -1 167 0 248 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    4 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 
5 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n D NAG 1 A 1 NAG N 200 NAG 
4 n D NAG 2 A 2 NAG N 200 NAG 
4 n D BMA 3 A 3 BMA N 200 MAN 
4 n D MAN 4 A 4 MAN N 200 MAN 
4 n D MAN 5 A 5 MAN N 200 MAN 
4 n D MAN 6 A 6 MAN N 200 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 N CYS 92 1_555 A SG CYS 338 N CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf2 A SG CYS 44 N CYS 124 1_555 A SG CYS 49 N CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf3 A SG CYS 96 N CYS 175 1_555 A SG CYS 114 N CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf4 A SG CYS 104 N CYS 183 1_555 A SG CYS 151 N CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf5 A SG CYS 153 N CYS 232 1_555 A SG CYS 158 N CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf6 A SG CYS 199 N CYS 278 1_555 A SG CYS 212 N CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf7 A SG CYS 201 N CYS 280 1_555 A SG CYS 210 N CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf8 A SG CYS 239 N CYS 318 1_555 A SG CYS 257 N CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
disulf ? disulf9 A SG CYS 342 N CYS 421 1_555 A SG CYS 368 N CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf10 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf12 B SG CYS 214 L CYS 214 1_555 C SG CYS 135 H CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf13 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
disulf ? disulf14 C SG CYS 147 H CYS 142 1_555 C SG CYS 202 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
covale ? covale1 A ND2 ASN 6 N ASN 86 1_555 E C1 NAG . N NAG 475 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 66 N ASN 146 1_555 F C1 NAG . N NAG 476 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 A ND2 ASN 121 N ASN 200 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale4 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 D O4 NAG . A NAG 2 1_555 D C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale6 D O3 BMA . A BMA 3 1_555 D C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale7 D O2 MAN . A MAN 4 1_555 D C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale8 D O2 MAN . A MAN 5 1_555 D C1 MAN . A MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
metalc ? metalc1 G CA CA . N CA 1 1_555 A O ASP 214 N ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc2 G CA CA . N CA 1 1_555 A O GLY 218 N GLY 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? 
metalc ? metalc3 G CA CA . N CA 1 1_555 A OD2 ASP 245 N ASP 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? 
metalc ? metalc4 G CA CA . N CA 1 1_555 A O ASN 267 N ASN 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1NCA 
_atom_sites.fract_transf_matrix[1][1]    0.005988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008065 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG N 1 475 86 NAG NAG A 
F 5 NAG N 1 476 146 NAG NAG A 
G 6 CA N 1 1 1 CA CA . 
H 7 HOH N 1 5 5 HOH HOH . 
H 7 HOH N 2 8 8 HOH HOH . 
H 7 HOH N 3 9 9 HOH HOH . 
H 7 HOH N 4 10 10 HOH HOH . 
H 7 HOH N 5 11 11 HOH HOH . 
H 7 HOH N 6 13 13 HOH HOH . 
H 7 HOH N 7 14 14 HOH HOH . 
H 7 HOH N 8 15 15 HOH HOH . 
H 7 HOH N 9 16 16 HOH HOH . 
H 7 HOH N 10 17 17 HOH HOH . 
H 7 HOH N 11 18 18 HOH HOH . 
H 7 HOH N 12 19 19 HOH HOH . 
H 7 HOH N 13 20 20 HOH HOH . 
H 7 HOH N 14 21 21 HOH HOH . 
H 7 HOH N 15 22 22 HOH HOH . 
H 7 HOH N 16 23 23 HOH HOH . 
H 7 HOH N 17 24 24 HOH HOH . 
H 7 HOH N 18 25 25 HOH HOH . 
H 7 HOH N 19 26 26 HOH HOH . 
H 7 HOH N 20 27 27 HOH HOH . 
H 7 HOH N 21 28 28 HOH HOH . 
H 7 HOH N 22 29 29 HOH HOH . 
H 7 HOH N 23 30 30 HOH HOH . 
H 7 HOH N 24 31 31 HOH HOH . 
H 7 HOH N 25 32 32 HOH HOH . 
H 7 HOH N 26 33 33 HOH HOH . 
H 7 HOH N 27 34 34 HOH HOH . 
H 7 HOH N 28 35 35 HOH HOH . 
H 7 HOH N 29 36 36 HOH HOH . 
H 7 HOH N 30 37 37 HOH HOH . 
H 7 HOH N 31 38 38 HOH HOH . 
H 7 HOH N 32 39 39 HOH HOH . 
H 7 HOH N 33 40 40 HOH HOH . 
H 7 HOH N 34 41 41 HOH HOH . 
H 7 HOH N 35 42 42 HOH HOH . 
H 7 HOH N 36 43 43 HOH HOH . 
H 7 HOH N 37 44 44 HOH HOH . 
H 7 HOH N 38 45 45 HOH HOH . 
H 7 HOH N 39 46 46 HOH HOH . 
H 7 HOH N 40 47 47 HOH HOH . 
H 7 HOH N 41 48 48 HOH HOH . 
H 7 HOH N 42 49 49 HOH HOH . 
H 7 HOH N 43 50 50 HOH HOH . 
H 7 HOH N 44 51 51 HOH HOH . 
H 7 HOH N 45 52 52 HOH HOH . 
H 7 HOH N 46 53 53 HOH HOH . 
H 7 HOH N 47 54 54 HOH HOH . 
H 7 HOH N 48 55 55 HOH HOH . 
H 7 HOH N 49 56 56 HOH HOH . 
H 7 HOH N 50 57 57 HOH HOH . 
H 7 HOH N 51 58 58 HOH HOH . 
H 7 HOH N 52 59 59 HOH HOH . 
H 7 HOH N 53 60 60 HOH HOH . 
H 7 HOH N 54 61 61 HOH HOH . 
H 7 HOH N 55 62 62 HOH HOH . 
H 7 HOH N 56 63 63 HOH HOH . 
H 7 HOH N 57 64 64 HOH HOH . 
H 7 HOH N 58 65 65 HOH HOH . 
H 7 HOH N 59 66 66 HOH HOH . 
H 7 HOH N 60 67 67 HOH HOH . 
H 7 HOH N 61 68 68 HOH HOH . 
H 7 HOH N 62 69 69 HOH HOH . 
H 7 HOH N 63 70 70 HOH HOH . 
H 7 HOH N 64 71 71 HOH HOH . 
H 7 HOH N 65 72 72 HOH HOH . 
H 7 HOH N 66 73 73 HOH HOH . 
I 7 HOH L 1 215 2 HOH HOH . 
I 7 HOH L 2 216 7 HOH HOH . 
J 7 HOH H 1 228 3 HOH HOH . 
J 7 HOH H 2 229 4 HOH HOH . 
J 7 HOH H 3 230 6 HOH HOH . 
J 7 HOH H 4 231 12 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               47.329 
_atom_site.Cartn_y               20.036 
_atom_site.Cartn_z               127.24 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        85.51 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          N 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           513 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#