data_1NCO # _model_server_result.job_id Xt3pEZYZ1v2F9zsg_gcjnQ _model_server_result.datetime_utc '2024-12-23 19:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":114}' # _entry.id 1NCO # _exptl.entry_id 1NCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NCO _cell.length_a 90.4 _cell.length_b 90.4 _cell.length_c 52.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 37 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf3 B SG CYS 37 B CYS 37 1_555 B SG CYS 47 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 B SG CYS 88 B CYS 88 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 284 n n C1 H1C1 MRD sing 285 n n C1 H1C2 MRD sing 286 n n C1 H1C3 MRD sing 287 n n C2 O2 MRD sing 288 n n C2 CM MRD sing 289 n n C2 C3 MRD sing 290 n n O2 H2 MRD sing 291 n n CM HMC1 MRD sing 292 n n CM HMC2 MRD sing 293 n n CM HMC3 MRD sing 294 n n C3 C4 MRD sing 295 n n C3 H3C1 MRD sing 296 n n C3 H3C2 MRD sing 297 n n C4 O4 MRD sing 298 n n C4 C5 MRD sing 299 n n C4 H4 MRD sing 300 n n O4 HA MRD sing 301 n n C5 H5C1 MRD sing 302 n n C5 H5C2 MRD sing 303 n n C5 H5C3 MRD sing 304 n n # _atom_sites.entry_id 1NCO _atom_sites.fract_transf_matrix[1][1] 0.011062 _atom_sites.fract_transf_matrix[1][2] 0.006387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MRD A 1 114 1 MRD MPD . D 3 CHR B 1 114 1 CHR CHR . E 4 HOH A 1 115 10 HOH HOH . E 4 HOH A 2 116 25 HOH HOH . E 4 HOH A 3 117 27 HOH HOH . E 4 HOH A 4 118 28 HOH HOH . E 4 HOH A 5 119 29 HOH HOH . E 4 HOH A 6 120 30 HOH HOH . E 4 HOH A 7 121 31 HOH HOH . E 4 HOH A 8 122 32 HOH HOH . E 4 HOH A 9 123 33 HOH HOH . E 4 HOH A 10 124 34 HOH HOH . E 4 HOH A 11 125 35 HOH HOH . E 4 HOH A 12 126 36 HOH HOH . E 4 HOH A 13 127 37 HOH HOH . E 4 HOH A 14 128 38 HOH HOH . E 4 HOH A 15 129 39 HOH HOH . E 4 HOH A 16 130 40 HOH HOH . E 4 HOH A 17 131 41 HOH HOH . E 4 HOH A 18 132 42 HOH HOH . E 4 HOH A 19 133 43 HOH HOH . E 4 HOH A 20 134 44 HOH HOH . E 4 HOH A 21 135 45 HOH HOH . E 4 HOH A 22 136 46 HOH HOH . E 4 HOH A 23 137 47 HOH HOH . E 4 HOH A 24 138 48 HOH HOH . E 4 HOH A 25 139 49 HOH HOH . E 4 HOH A 26 140 50 HOH HOH . E 4 HOH A 27 141 51 HOH HOH . E 4 HOH A 28 142 52 HOH HOH . E 4 HOH A 29 143 53 HOH HOH . E 4 HOH A 30 144 54 HOH HOH . E 4 HOH A 31 145 55 HOH HOH . E 4 HOH A 32 146 56 HOH HOH . E 4 HOH A 33 147 57 HOH HOH . E 4 HOH A 34 148 58 HOH HOH . E 4 HOH A 35 149 61 HOH HOH . E 4 HOH A 36 150 86 HOH HOH . E 4 HOH A 37 151 90 HOH HOH . E 4 HOH A 38 152 91 HOH HOH . E 4 HOH A 39 153 92 HOH HOH . E 4 HOH A 40 154 93 HOH HOH . E 4 HOH A 41 155 94 HOH HOH . E 4 HOH A 42 156 95 HOH HOH . E 4 HOH A 43 157 96 HOH HOH . E 4 HOH A 44 158 97 HOH HOH . E 4 HOH A 45 159 98 HOH HOH . E 4 HOH A 46 160 100 HOH HOH . E 4 HOH A 47 161 102 HOH HOH . E 4 HOH A 48 162 103 HOH HOH . E 4 HOH A 49 163 104 HOH HOH . E 4 HOH A 50 164 105 HOH HOH . E 4 HOH A 51 165 106 HOH HOH . E 4 HOH A 52 166 107 HOH HOH . E 4 HOH A 53 167 108 HOH HOH . E 4 HOH A 54 168 109 HOH HOH . E 4 HOH A 55 169 111 HOH HOH . E 4 HOH A 56 170 113 HOH HOH . E 4 HOH A 57 171 114 HOH HOH . E 4 HOH A 58 172 115 HOH HOH . E 4 HOH A 59 173 116 HOH HOH . E 4 HOH A 60 174 119 HOH HOH . E 4 HOH A 61 175 120 HOH HOH . E 4 HOH A 62 176 122 HOH HOH . E 4 HOH A 63 177 123 HOH HOH . E 4 HOH A 64 178 124 HOH HOH . E 4 HOH A 65 179 125 HOH HOH . E 4 HOH A 66 180 126 HOH HOH . E 4 HOH A 67 181 127 HOH HOH . E 4 HOH A 68 182 128 HOH HOH . E 4 HOH A 69 183 129 HOH HOH . E 4 HOH A 70 184 130 HOH HOH . E 4 HOH A 71 185 131 HOH HOH . E 4 HOH A 72 186 132 HOH HOH . E 4 HOH A 73 187 133 HOH HOH . E 4 HOH A 74 188 134 HOH HOH . E 4 HOH A 75 189 135 HOH HOH . E 4 HOH A 76 190 137 HOH HOH . E 4 HOH A 77 191 138 HOH HOH . E 4 HOH A 78 192 139 HOH HOH . E 4 HOH A 79 193 140 HOH HOH . E 4 HOH A 80 194 141 HOH HOH . F 4 HOH B 1 115 1 HOH HOH . F 4 HOH B 2 116 2 HOH HOH . F 4 HOH B 3 117 3 HOH HOH . F 4 HOH B 4 118 4 HOH HOH . F 4 HOH B 5 119 5 HOH HOH . F 4 HOH B 6 120 6 HOH HOH . F 4 HOH B 7 121 7 HOH HOH . F 4 HOH B 8 122 8 HOH HOH . F 4 HOH B 9 123 9 HOH HOH . F 4 HOH B 10 124 11 HOH HOH . F 4 HOH B 11 125 12 HOH HOH . F 4 HOH B 12 126 13 HOH HOH . F 4 HOH B 13 127 14 HOH HOH . F 4 HOH B 14 128 15 HOH HOH . F 4 HOH B 15 129 16 HOH HOH . F 4 HOH B 16 130 17 HOH HOH . F 4 HOH B 17 131 18 HOH HOH . F 4 HOH B 18 132 19 HOH HOH . F 4 HOH B 19 133 20 HOH HOH . F 4 HOH B 20 134 21 HOH HOH . F 4 HOH B 21 135 22 HOH HOH . F 4 HOH B 22 136 23 HOH HOH . F 4 HOH B 23 137 24 HOH HOH . F 4 HOH B 24 138 26 HOH HOH . F 4 HOH B 25 139 59 HOH HOH . F 4 HOH B 26 140 62 HOH HOH . F 4 HOH B 27 141 63 HOH HOH . F 4 HOH B 28 142 64 HOH HOH . F 4 HOH B 29 143 65 HOH HOH . F 4 HOH B 30 144 66 HOH HOH . F 4 HOH B 31 145 67 HOH HOH . F 4 HOH B 32 146 68 HOH HOH . F 4 HOH B 33 147 69 HOH HOH . F 4 HOH B 34 148 70 HOH HOH . F 4 HOH B 35 149 71 HOH HOH . F 4 HOH B 36 150 72 HOH HOH . F 4 HOH B 37 151 73 HOH HOH . F 4 HOH B 38 152 74 HOH HOH . F 4 HOH B 39 153 75 HOH HOH . F 4 HOH B 40 154 76 HOH HOH . F 4 HOH B 41 155 77 HOH HOH . F 4 HOH B 42 156 78 HOH HOH . F 4 HOH B 43 157 79 HOH HOH . F 4 HOH B 44 158 80 HOH HOH . F 4 HOH B 45 159 81 HOH HOH . F 4 HOH B 46 160 82 HOH HOH . F 4 HOH B 47 161 83 HOH HOH . F 4 HOH B 48 162 84 HOH HOH . F 4 HOH B 49 163 85 HOH HOH . F 4 HOH B 50 164 88 HOH HOH . F 4 HOH B 51 165 89 HOH HOH . F 4 HOH B 52 166 99 HOH HOH . F 4 HOH B 53 167 112 HOH HOH . F 4 HOH B 54 168 121 HOH HOH . F 4 HOH B 55 169 142 HOH HOH . F 4 HOH B 56 170 143 HOH HOH . F 4 HOH B 57 171 144 HOH HOH . F 4 HOH B 58 172 145 HOH HOH . F 4 HOH B 59 173 147 HOH HOH . F 4 HOH B 60 174 148 HOH HOH . F 4 HOH B 61 175 149 HOH HOH . F 4 HOH B 62 176 150 HOH HOH . F 4 HOH B 63 177 151 HOH HOH . F 4 HOH B 64 178 152 HOH HOH . F 4 HOH B 65 179 153 HOH HOH . F 4 HOH B 66 180 154 HOH HOH . F 4 HOH B 67 181 155 HOH HOH . F 4 HOH B 68 182 156 HOH HOH . F 4 HOH B 69 183 157 HOH HOH . F 4 HOH B 70 184 162 HOH HOH . F 4 HOH B 71 185 163 HOH HOH . F 4 HOH B 72 186 164 HOH HOH . F 4 HOH B 73 187 165 HOH HOH . F 4 HOH B 74 188 166 HOH HOH . F 4 HOH B 75 189 167 HOH HOH . F 4 HOH B 76 190 168 HOH HOH . F 4 HOH B 77 191 169 HOH HOH . F 4 HOH B 78 192 170 HOH HOH . F 4 HOH B 79 193 171 HOH HOH . F 4 HOH B 80 194 172 HOH HOH . F 4 HOH B 81 195 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . C 2 33.207 3.105 4.354 0.88 27.78 ? C1 MRD 114 A 1 HETATM 2 C C2 MRD . . . C 2 33.606 3.783 5.638 0.88 27.47 ? C2 MRD 114 A 1 HETATM 3 O O2 MRD . . . C 2 34.952 3.429 5.941 0.88 29.21 ? O2 MRD 114 A 1 HETATM 4 C CM MRD . . . C 2 33.648 5.242 5.463 0.88 27.61 ? CM MRD 114 A 1 HETATM 5 C C3 MRD . . . C 2 32.6 3.373 6.696 0.88 28.77 ? C3 MRD 114 A 1 HETATM 6 C C4 MRD . . . C 2 32.778 3.905 8.136 0.88 29.99 ? C4 MRD 114 A 1 HETATM 7 O O4 MRD . . . C 2 34.142 3.836 8.544 0.88 30.63 ? O4 MRD 114 A 1 HETATM 8 C C5 MRD . . . C 2 31.951 3.075 9.115 0.88 30.5 ? C5 MRD 114 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #