data_1ND1 # _model_server_result.job_id E1_IZKEruxXqNUdtAXXIKw _model_server_result.datetime_utc '2025-04-09 20:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1ND1 # _exptl.entry_id 1ND1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ND1 _cell.length_a 38.425 _cell.length_b 60.364 _cell.length_c 86.257 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ND1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 197 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 157 A CYS 157 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ARG 2 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? metalc ? metalc1 A NE2 HIS 142 A HIS 142 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 146 A HIS 146 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 A NE2 HIS 152 A HIS 152 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 B ZN ZN . A ZN 400 1_555 C O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ND1 _atom_sites.fract_transf_matrix[1][1] 0.026025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 400 400 ZN ZN2 . C 3 HOH A 1 401 1 HOH TIP . C 3 HOH A 2 402 2 HOH TIP . C 3 HOH A 3 403 3 HOH TIP . C 3 HOH A 4 404 4 HOH TIP . C 3 HOH A 5 405 5 HOH TIP . C 3 HOH A 6 406 6 HOH TIP . C 3 HOH A 7 407 7 HOH TIP . C 3 HOH A 8 408 8 HOH TIP . C 3 HOH A 9 409 9 HOH TIP . C 3 HOH A 10 410 10 HOH TIP . C 3 HOH A 11 411 11 HOH TIP . C 3 HOH A 12 412 12 HOH TIP . C 3 HOH A 13 413 13 HOH TIP . C 3 HOH A 14 414 14 HOH TIP . C 3 HOH A 15 415 15 HOH TIP . C 3 HOH A 16 416 16 HOH TIP . C 3 HOH A 17 417 17 HOH TIP . C 3 HOH A 18 418 18 HOH TIP . C 3 HOH A 19 419 19 HOH TIP . C 3 HOH A 20 420 20 HOH TIP . C 3 HOH A 21 421 21 HOH TIP . C 3 HOH A 22 422 22 HOH TIP . C 3 HOH A 23 423 23 HOH TIP . C 3 HOH A 24 424 24 HOH TIP . C 3 HOH A 25 425 25 HOH TIP . C 3 HOH A 26 426 26 HOH TIP . C 3 HOH A 27 427 27 HOH TIP . C 3 HOH A 28 428 28 HOH TIP . C 3 HOH A 29 429 29 HOH TIP . C 3 HOH A 30 430 30 HOH TIP . C 3 HOH A 31 431 31 HOH TIP . C 3 HOH A 32 432 32 HOH TIP . C 3 HOH A 33 433 33 HOH TIP . C 3 HOH A 34 434 34 HOH TIP . C 3 HOH A 35 435 35 HOH TIP . C 3 HOH A 36 436 36 HOH TIP . C 3 HOH A 37 437 37 HOH TIP . C 3 HOH A 38 438 38 HOH TIP . C 3 HOH A 39 439 39 HOH TIP . C 3 HOH A 40 440 40 HOH TIP . C 3 HOH A 41 441 41 HOH TIP . C 3 HOH A 42 442 42 HOH TIP . C 3 HOH A 43 443 43 HOH TIP . C 3 HOH A 44 444 44 HOH TIP . C 3 HOH A 45 445 45 HOH TIP . C 3 HOH A 46 446 46 HOH TIP . C 3 HOH A 47 447 47 HOH TIP . C 3 HOH A 48 448 48 HOH TIP . C 3 HOH A 49 449 49 HOH TIP . C 3 HOH A 50 450 50 HOH TIP . C 3 HOH A 51 451 51 HOH TIP . C 3 HOH A 52 452 52 HOH TIP . C 3 HOH A 53 453 53 HOH TIP . C 3 HOH A 54 454 54 HOH TIP . C 3 HOH A 55 455 55 HOH TIP . C 3 HOH A 56 456 56 HOH TIP . C 3 HOH A 57 457 57 HOH TIP . C 3 HOH A 58 458 58 HOH TIP . C 3 HOH A 59 459 59 HOH TIP . C 3 HOH A 60 460 60 HOH TIP . C 3 HOH A 61 461 61 HOH TIP . C 3 HOH A 62 462 62 HOH TIP . C 3 HOH A 63 463 63 HOH TIP . C 3 HOH A 64 464 64 HOH TIP . C 3 HOH A 65 465 65 HOH TIP . C 3 HOH A 66 466 66 HOH TIP . C 3 HOH A 67 467 67 HOH TIP . C 3 HOH A 68 468 68 HOH TIP . C 3 HOH A 69 469 69 HOH TIP . C 3 HOH A 70 470 70 HOH TIP . C 3 HOH A 71 471 71 HOH TIP . C 3 HOH A 72 472 72 HOH TIP . C 3 HOH A 73 473 73 HOH TIP . C 3 HOH A 74 474 74 HOH TIP . C 3 HOH A 75 475 75 HOH TIP . C 3 HOH A 76 476 76 HOH TIP . C 3 HOH A 77 477 77 HOH TIP . C 3 HOH A 78 478 78 HOH TIP . C 3 HOH A 79 479 79 HOH TIP . C 3 HOH A 80 480 80 HOH TIP . C 3 HOH A 81 481 81 HOH TIP . C 3 HOH A 82 482 82 HOH TIP . C 3 HOH A 83 483 83 HOH TIP . C 3 HOH A 84 484 84 HOH TIP . C 3 HOH A 85 485 85 HOH TIP . C 3 HOH A 86 486 86 HOH TIP . C 3 HOH A 87 487 87 HOH TIP . C 3 HOH A 88 488 88 HOH TIP . C 3 HOH A 89 489 89 HOH TIP . C 3 HOH A 90 490 90 HOH TIP . C 3 HOH A 91 491 91 HOH TIP . C 3 HOH A 92 492 92 HOH TIP . C 3 HOH A 93 493 93 HOH TIP . C 3 HOH A 94 494 94 HOH TIP . C 3 HOH A 95 495 95 HOH TIP . C 3 HOH A 96 496 96 HOH TIP . C 3 HOH A 97 497 97 HOH TIP . C 3 HOH A 98 498 98 HOH TIP . C 3 HOH A 99 499 99 HOH TIP . C 3 HOH A 100 500 100 HOH TIP . C 3 HOH A 101 501 101 HOH TIP . C 3 HOH A 102 502 102 HOH TIP . C 3 HOH A 103 503 103 HOH TIP . C 3 HOH A 104 504 104 HOH TIP . C 3 HOH A 105 505 105 HOH TIP . C 3 HOH A 106 506 106 HOH TIP . C 3 HOH A 107 507 107 HOH TIP . C 3 HOH A 108 508 108 HOH TIP . C 3 HOH A 109 509 109 HOH TIP . C 3 HOH A 110 510 110 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.611 _atom_site.Cartn_y 16.296 _atom_site.Cartn_z 24.802 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #