data_1NDA
#
_model_server_result.job_id            Dq-oBA0ANHgZ3bkTozH5pg 
_model_server_result.datetime_utc      '2024-12-26 10:27:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    1NDA 
#
_exptl.entry_id    1NDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94 
_cell.angle_gamma         90 
_cell.entry_id            1NDA 
_cell.length_a            136.3 
_cell.length_b            91.1 
_cell.length_c            126 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 52 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
disulf ? disulf2 B SG CYS 52 B CYS 52 1_555 B SG CYS 57 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
disulf ? disulf3 C SG CYS 52 C CYS 52 1_555 C SG CYS 57 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
disulf ? disulf4 D SG CYS 52 D CYS 52 1_555 D SG CYS 57 D CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1NDA 
_atom_sites.fract_transf_matrix[1][1]    0.007337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000513 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 2 FAD B 1 500 500 FAD FAD . 
G 2 FAD C 1 500 500 FAD FAD . 
H 2 FAD D 1 500 500 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 63.424 52.869 -8.562 1 6.05 ? PA FAD 500 B 1 
HETATM 2 O O1A FAD . . . F 2 62.047 53.044 -9.093 1 6.98 ? O1A FAD 500 B 1 
HETATM 3 O O2A FAD . . . F 2 63.775 53.507 -7.287 1 8.12 ? O2A FAD 500 B 1 
HETATM 4 O O5B FAD . . . F 2 64.436 53.47 -9.643 1 5.25 ? O5B FAD 500 B 1 
HETATM 5 C C5B FAD . . . F 2 64.684 52.991 -10.949 1 5.07 ? C5B FAD 500 B 1 
HETATM 6 C C4B FAD . . . F 2 65.453 54.05 -11.661 1 6.77 ? C4B FAD 500 B 1 
HETATM 7 O O4B FAD . . . F 2 66.068 53.621 -12.859 1 7.4 ? O4B FAD 500 B 1 
HETATM 8 C C3B FAD . . . F 2 64.766 55.326 -11.97 1 5.23 ? C3B FAD 500 B 1 
HETATM 9 O O3B FAD . . . F 2 65.608 56.294 -11.424 1 7.04 ? O3B FAD 500 B 1 
HETATM 10 C C2B FAD . . . F 2 64.677 55.276 -13.498 1 5.05 ? C2B FAD 500 B 1 
HETATM 11 O O2B FAD . . . F 2 64.486 56.486 -14.232 1 4.36 ? O2B FAD 500 B 1 
HETATM 12 C C1B FAD . . . F 2 65.968 54.6 -13.874 1 5.12 ? C1B FAD 500 B 1 
HETATM 13 N N9A FAD . . . F 2 65.85 53.789 -15.086 1 4.52 ? N9A FAD 500 B 1 
HETATM 14 C C8A FAD . . . F 2 64.747 53.155 -15.548 1 5.7 ? C8A FAD 500 B 1 
HETATM 15 N N7A FAD . . . F 2 64.83 52.735 -16.774 1 7.29 ? N7A FAD 500 B 1 
HETATM 16 C C5A FAD . . . F 2 66.161 52.909 -17.044 1 5.38 ? C5A FAD 500 B 1 
HETATM 17 C C6A FAD . . . F 2 66.879 52.517 -18.141 1 6.53 ? C6A FAD 500 B 1 
HETATM 18 N N6A FAD . . . F 2 66.397 51.677 -19.041 1 10.52 ? N6A FAD 500 B 1 
HETATM 19 N N1A FAD . . . F 2 68.11 52.989 -18.163 1 7.24 ? N1A FAD 500 B 1 
HETATM 20 C C2A FAD . . . F 2 68.621 53.569 -17.08 1 6.53 ? C2A FAD 500 B 1 
HETATM 21 N N3A FAD . . . F 2 68.067 53.804 -15.912 1 3.95 ? N3A FAD 500 B 1 
HETATM 22 C C4A FAD . . . F 2 66.796 53.504 -15.996 1 3.69 ? C4A FAD 500 B 1 
HETATM 23 N N1 FAD . . . F 2 57.299 52.821 -1.506 1 4.95 ? N1 FAD 500 B 1 
HETATM 24 C C2 FAD . . . F 2 57.341 52.916 -0.134 1 4.28 ? C2 FAD 500 B 1 
HETATM 25 O O2 FAD . . . F 2 57.988 52.176 0.572 1 2.49 ? O2 FAD 500 B 1 
HETATM 26 N N3 FAD . . . F 2 56.618 53.917 0.523 1 2.49 ? N3 FAD 500 B 1 
HETATM 27 C C4 FAD . . . F 2 55.762 54.801 -0.06 1 6.03 ? C4 FAD 500 B 1 
HETATM 28 O O4 FAD . . . F 2 55.104 55.64 0.558 1 8.48 ? O4 FAD 500 B 1 
HETATM 29 C C4X FAD . . . F 2 55.672 54.707 -1.541 1 6.98 ? C4X FAD 500 B 1 
HETATM 30 N N5 FAD . . . F 2 54.938 55.567 -2.147 1 7.4 ? N5 FAD 500 B 1 
HETATM 31 C C5X FAD . . . F 2 54.955 55.539 -3.478 1 5.64 ? C5X FAD 500 B 1 
HETATM 32 C C6 FAD . . . F 2 54.185 56.537 -4.035 1 8.39 ? C6 FAD 500 B 1 
HETATM 33 C C7 FAD . . . F 2 54.175 56.79 -5.385 1 6.76 ? C7 FAD 500 B 1 
HETATM 34 C C7M FAD . . . F 2 53.64 57.566 -5.698 1 7.3 ? C7M FAD 500 B 1 
HETATM 35 C C8 FAD . . . F 2 54.982 55.907 -6.191 1 6.62 ? C8 FAD 500 B 1 
HETATM 36 C C8M FAD . . . F 2 55.031 55.983 -7.143 1 8.23 ? C8M FAD 500 B 1 
HETATM 37 C C9 FAD . . . F 2 55.705 54.856 -5.599 1 4.72 ? C9 FAD 500 B 1 
HETATM 38 C C9A FAD . . . F 2 55.815 54.736 -4.233 1 4.3 ? C9A FAD 500 B 1 
HETATM 39 N N10 FAD . . . F 2 56.534 53.739 -3.559 1 4.74 ? N10 FAD 500 B 1 
HETATM 40 C C10 FAD . . . F 2 56.596 53.748 -2.181 1 5.45 ? C10 FAD 500 B 1 
HETATM 41 C C1' FAD . . . F 2 57.218 52.613 -4.221 1 4.83 ? C1' FAD 500 B 1 
HETATM 42 C C2' FAD . . . F 2 58.681 52.925 -4.274 1 5.31 ? C2' FAD 500 B 1 
HETATM 43 O O2' FAD . . . F 2 58.782 54.282 -4.643 1 3.62 ? O2' FAD 500 B 1 
HETATM 44 C C3' FAD . . . F 2 59.392 51.959 -5.21 1 4.13 ? C3' FAD 500 B 1 
HETATM 45 O O3' FAD . . . F 2 59.056 50.674 -4.822 1 3.75 ? O3' FAD 500 B 1 
HETATM 46 C C4' FAD . . . F 2 60.84 51.815 -5.006 1 5.81 ? C4' FAD 500 B 1 
HETATM 47 O O4' FAD . . . F 2 61.43 53.063 -5.113 1 11.12 ? O4' FAD 500 B 1 
HETATM 48 C C5' FAD . . . F 2 61.484 50.842 -6.002 1 5.61 ? C5' FAD 500 B 1 
HETATM 49 O O5' FAD . . . F 2 62.907 50.948 -6.117 1 5.37 ? O5' FAD 500 B 1 
HETATM 50 P P FAD . . . F 2 63.759 50.338 -7.299 1 5.32 ? P FAD 500 B 1 
HETATM 51 O O1P FAD . . . F 2 65.16 50.272 -6.855 1 7.17 ? O1P FAD 500 B 1 
HETATM 52 O O2P FAD . . . F 2 63.173 49.113 -7.877 1 6.44 ? O2P FAD 500 B 1 
HETATM 53 O O3P FAD . . . F 2 63.711 51.369 -8.428 1 6.43 ? O3P FAD 500 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           53 
#