data_1NDE # _model_server_result.job_id aXeNa30ePHF49v09BEK-Sg _model_server_result.datetime_utc '2024-11-22 22:14:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 1NDE # _exptl.entry_id 1NDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.045 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-{[4-{[3-(4-CHLOROPHENYL)PROPYL]SULFANYL}-6-(1-PIPERAZINYL)-1,3,5-TRIAZIN-2-YL]AMINO}ETHYL)PHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1NDE _cell.length_a 65.558 _cell.length_b 65.558 _cell.length_c 239.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 A,B,C 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -239.3 3 'crystal symmetry operation' 12_544 x,x-y-1,-z-5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 32.779 -56.774893 -199.416667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 Cl N6 O S' _chem_comp.formula_weight 485.045 _chem_comp.id MON _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-{[4-{[3-(4-CHLOROPHENYL)PROPYL]SULFANYL}-6-(1-PIPERAZINYL)-1,3,5-TRIAZIN-2-YL]AMINO}ETHYL)PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 MON sing 237 n n C1 N3 MON doub 238 n y C1 N4 MON sing 239 n y N2 C5 MON sing 240 n n N2 C6 MON sing 241 n n N3 C7 MON sing 242 n y N4 C8 MON doub 243 n y C5 C9 MON sing 244 n n C5 H51 MON sing 245 n n C5 H52 MON sing 246 n n C6 C10 MON sing 247 n n C6 H61 MON sing 248 n n C6 H62 MON sing 249 n n C7 N11 MON doub 250 n y C7 N12 MON sing 251 n n C8 N11 MON sing 252 n y C8 S13 MON sing 253 n n C9 N14 MON sing 254 n n C9 H91 MON sing 255 n n C9 H92 MON sing 256 n n C10 N14 MON sing 257 n n C10 H101 MON sing 258 n n C10 H102 MON sing 259 n n N12 C15 MON sing 260 n n N12 H12 MON sing 261 n n S13 C16 MON sing 262 n n N14 H14 MON sing 263 n n C15 C17 MON sing 264 n n C15 H151 MON sing 265 n n C15 H152 MON sing 266 n n C16 C18 MON sing 267 n n C16 H161 MON sing 268 n n C16 H162 MON sing 269 n n C17 C19 MON sing 270 n n C17 H171 MON sing 271 n n C17 H172 MON sing 272 n n C18 C20 MON sing 273 n n C18 H181 MON sing 274 n n C18 H182 MON sing 275 n n C19 C21 MON doub 276 n y C19 C22 MON sing 277 n y C20 C23 MON sing 278 n n C20 H201 MON sing 279 n n C20 H202 MON sing 280 n n C21 C24 MON sing 281 n y C21 H21 MON sing 282 n n C22 C25 MON doub 283 n y C22 H22 MON sing 284 n n C23 C26 MON doub 285 n y C23 C27 MON sing 286 n y C24 C28 MON doub 287 n y C24 H24 MON sing 288 n n C25 C28 MON sing 289 n y C25 H25 MON sing 290 n n C26 C29 MON sing 291 n y C26 H26 MON sing 292 n n C27 C30 MON doub 293 n y C27 H27 MON sing 294 n n C28 O31 MON sing 295 n n C29 C32 MON doub 296 n y C29 H29 MON sing 297 n n C30 C32 MON sing 298 n y C30 H30 MON sing 299 n n O31 H31 MON sing 300 n n C32 CL33 MON sing 301 n n # _atom_sites.entry_id 1NDE _atom_sites.fract_transf_matrix[1][1] 0.015254 _atom_sites.fract_transf_matrix[1][2] 0.008807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MON A 1 101 1 MON MON . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MON . . . B 2 110.737 5.532 -105.359 1 70.73 ? C1 MON 101 A 1 HETATM 2 N N2 MON . . . B 2 110.921 4.557 -104.453 1 65.9 ? N2 MON 101 A 1 HETATM 3 N N3 MON . . . B 2 109.606 6.262 -105.499 1 75.94 ? N3 MON 101 A 1 HETATM 4 N N4 MON . . . B 2 111.641 5.956 -106.299 1 79.56 ? N4 MON 101 A 1 HETATM 5 C C5 MON . . . B 2 112.151 3.792 -104.313 1 64.77 ? C5 MON 101 A 1 HETATM 6 C C6 MON . . . B 2 109.918 4.144 -103.47 1 63.05 ? C6 MON 101 A 1 HETATM 7 C C7 MON . . . B 2 109.371 7.253 -106.386 1 82.55 ? C7 MON 101 A 1 HETATM 8 C C8 MON . . . B 2 111.433 6.941 -107.202 1 85.58 ? C8 MON 101 A 1 HETATM 9 C C9 MON . . . B 2 112.177 2.368 -103.656 1 64.05 ? C9 MON 101 A 1 HETATM 10 C C10 MON . . . B 2 109.856 2.697 -102.932 1 59.47 ? C10 MON 101 A 1 HETATM 11 N N11 MON . . . B 2 110.303 7.517 -107.171 1 89.94 ? N11 MON 101 A 1 HETATM 12 N N12 MON . . . B 2 108.334 8.05 -106.627 1 80.07 ? N12 MON 101 A 1 HETATM 13 S S13 MON . . . B 2 112.239 7.705 -108.444 1 89.74 ? S13 MON 101 A 1 HETATM 14 N N14 MON . . . B 2 111.193 2.255 -102.57 1 62.1 ? N14 MON 101 A 1 HETATM 15 C C15 MON . . . B 2 107.084 8.129 -106.006 1 77.06 ? C15 MON 101 A 1 HETATM 16 C C16 MON . . . B 2 113.652 7.907 -109.48 1 90.37 ? C16 MON 101 A 1 HETATM 17 C C17 MON . . . B 2 106.395 9.314 -106.732 1 63.88 ? C17 MON 101 A 1 HETATM 18 C C18 MON . . . B 2 112.546 8.653 -110.242 1 86.87 ? C18 MON 101 A 1 HETATM 19 C C19 MON . . . B 2 105.09 9.503 -106.108 1 68.4 ? C19 MON 101 A 1 HETATM 20 C C20 MON . . . B 2 112.519 9.402 -111.548 1 87.68 ? C20 MON 101 A 1 HETATM 21 C C21 MON . . . B 2 103.924 9.44 -106.873 1 74.47 ? C21 MON 101 A 1 HETATM 22 C C22 MON . . . B 2 105.033 9.731 -104.716 1 70.82 ? C22 MON 101 A 1 HETATM 23 C C23 MON . . . B 2 110.991 9.803 -111.51 1 82.72 ? C23 MON 101 A 1 HETATM 24 C C24 MON . . . B 2 102.681 9.603 -106.235 1 86.58 ? C24 MON 101 A 1 HETATM 25 C C25 MON . . . B 2 103.805 9.891 -104.092 1 79.69 ? C25 MON 101 A 1 HETATM 26 C C26 MON . . . B 2 110.536 11.132 -111.719 1 84.06 ? C26 MON 101 A 1 HETATM 27 C C27 MON . . . B 2 109.996 8.796 -111.23 1 79.03 ? C27 MON 101 A 1 HETATM 28 C C28 MON . . . B 2 102.624 9.821 -104.837 1 89.06 ? C28 MON 101 A 1 HETATM 29 C C29 MON . . . B 2 109.14 11.442 -111.657 1 76.21 ? C29 MON 101 A 1 HETATM 30 C C30 MON . . . B 2 108.62 9.116 -111.17 1 76 ? C30 MON 101 A 1 HETATM 31 O O31 MON . . . B 2 101.432 9.961 -104.206 1 95.32 ? O31 MON 101 A 1 HETATM 32 C C32 MON . . . B 2 108.19 10.432 -111.382 1 73.04 ? C32 MON 101 A 1 HETATM 33 CL CL33 MON . . . B 2 106.519 10.807 -111.306 1 66.74 ? CL33 MON 101 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #