data_1NDH
#
_model_server_result.job_id            zw2oG8m3WHiepm4Ig7w2eg 
_model_server_result.datetime_utc      '2024-11-15 14:58:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ndh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":273}' 
#
_entry.id    1NDH 
#
_exptl.entry_id    1NDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NDH 
_cell.length_a            86.9 
_cell.length_b            73.1 
_cell.length_c            48.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1NDH 
_atom_sites.fract_transf_matrix[1][1]    0.011507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02045 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 273 273 FAD FAD . 
C 3 HOH A 1 274 274 HOH HOH . 
C 3 HOH A 2 275 275 HOH HOH . 
C 3 HOH A 3 276 276 HOH HOH . 
C 3 HOH A 4 277 277 HOH HOH . 
C 3 HOH A 5 278 278 HOH HOH . 
C 3 HOH A 6 279 279 HOH HOH . 
C 3 HOH A 7 280 280 HOH HOH . 
C 3 HOH A 8 281 281 HOH HOH . 
C 3 HOH A 9 282 282 HOH HOH . 
C 3 HOH A 10 283 283 HOH HOH . 
C 3 HOH A 11 284 284 HOH HOH . 
C 3 HOH A 12 285 285 HOH HOH . 
C 3 HOH A 13 286 286 HOH HOH . 
C 3 HOH A 14 287 287 HOH HOH . 
C 3 HOH A 15 288 288 HOH HOH . 
C 3 HOH A 16 289 289 HOH HOH . 
C 3 HOH A 17 290 290 HOH HOH . 
C 3 HOH A 18 291 291 HOH HOH . 
C 3 HOH A 19 292 292 HOH HOH . 
C 3 HOH A 20 293 293 HOH HOH . 
C 3 HOH A 21 294 294 HOH HOH . 
C 3 HOH A 22 295 295 HOH HOH . 
C 3 HOH A 23 296 296 HOH HOH . 
C 3 HOH A 24 297 297 HOH HOH . 
C 3 HOH A 25 298 298 HOH HOH . 
C 3 HOH A 26 299 299 HOH HOH . 
C 3 HOH A 27 300 300 HOH HOH . 
C 3 HOH A 28 301 301 HOH HOH . 
C 3 HOH A 29 302 302 HOH HOH . 
C 3 HOH A 30 303 303 HOH HOH . 
C 3 HOH A 31 304 304 HOH HOH . 
C 3 HOH A 32 305 305 HOH HOH . 
C 3 HOH A 33 306 306 HOH HOH . 
C 3 HOH A 34 307 307 HOH HOH . 
C 3 HOH A 35 308 308 HOH HOH . 
C 3 HOH A 36 309 309 HOH HOH . 
C 3 HOH A 37 310 310 HOH HOH . 
C 3 HOH A 38 311 311 HOH HOH . 
C 3 HOH A 39 312 312 HOH HOH . 
C 3 HOH A 40 313 313 HOH HOH . 
C 3 HOH A 41 314 314 HOH HOH . 
C 3 HOH A 42 315 315 HOH HOH . 
C 3 HOH A 43 316 316 HOH HOH . 
C 3 HOH A 44 317 317 HOH HOH . 
C 3 HOH A 45 318 318 HOH HOH . 
C 3 HOH A 46 319 319 HOH HOH . 
C 3 HOH A 47 320 320 HOH HOH . 
C 3 HOH A 48 321 321 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 4.723 17.687 -6.695 1 15.84 ? PA FAD 273 A 1 
HETATM 2 O O1A FAD . . . B 2 4.594 17.178 -5.367 1 16.84 ? O1A FAD 273 A 1 
HETATM 3 O O2A FAD . . . B 2 3.707 18.417 -7.475 1 16.88 ? O2A FAD 273 A 1 
HETATM 4 O O5B FAD . . . B 2 5.484 16.562 -7.54 1 20.15 ? O5B FAD 273 A 1 
HETATM 5 C C5B FAD . . . B 2 6.162 15.474 -6.88 1 24.95 ? C5B FAD 273 A 1 
HETATM 6 C C4B FAD . . . B 2 7.292 15.171 -7.807 1 28.31 ? C4B FAD 273 A 1 
HETATM 7 O O4B FAD . . . B 2 7.177 13.793 -8.3 1 29.36 ? O4B FAD 273 A 1 
HETATM 8 C C3B FAD . . . B 2 8.679 15.237 -7.28 1 30.24 ? C3B FAD 273 A 1 
HETATM 9 O O3B FAD . . . B 2 8.725 15.069 -5.907 1 30.75 ? O3B FAD 273 A 1 
HETATM 10 C C2B FAD . . . B 2 9.434 14.158 -7.993 1 30.42 ? C2B FAD 273 A 1 
HETATM 11 O O2B FAD . . . B 2 9.522 13.003 -7.146 1 32.38 ? O2B FAD 273 A 1 
HETATM 12 C C1B FAD . . . B 2 8.44 13.677 -9.006 1 30.52 ? C1B FAD 273 A 1 
HETATM 13 N N9A FAD . . . B 2 8.473 14.592 -10.076 1 31.34 ? N9A FAD 273 A 1 
HETATM 14 C C8A FAD . . . B 2 7.528 15.453 -10.616 1 31.39 ? C8A FAD 273 A 1 
HETATM 15 N N7A FAD . . . B 2 8.017 16.126 -11.677 1 31.92 ? N7A FAD 273 A 1 
HETATM 16 C C5A FAD . . . B 2 9.297 15.665 -11.798 1 32.06 ? C5A FAD 273 A 1 
HETATM 17 C C6A FAD . . . B 2 10.367 15.975 -12.697 1 31.91 ? C6A FAD 273 A 1 
HETATM 18 N N6A FAD . . . B 2 10.342 16.843 -13.659 1 31.32 ? N6A FAD 273 A 1 
HETATM 19 N N1A FAD . . . B 2 11.51 15.285 -12.463 1 32.65 ? N1A FAD 273 A 1 
HETATM 20 C C2A FAD . . . B 2 11.653 14.372 -11.448 1 31.97 ? C2A FAD 273 A 1 
HETATM 21 N N3A FAD . . . B 2 10.731 14.047 -10.598 1 31.38 ? N3A FAD 273 A 1 
HETATM 22 C C4A FAD . . . B 2 9.611 14.711 -10.815 1 31.81 ? C4A FAD 273 A 1 
HETATM 23 N N1 FAD . . . B 2 12.197 20.915 -1.357 1 12 ? N1 FAD 273 A 1 
HETATM 24 C C2 FAD . . . B 2 12.953 21.944 -1.76 1 12.44 ? C2 FAD 273 A 1 
HETATM 25 O O2 FAD . . . B 2 13.106 22.183 -2.913 1 14.89 ? O2 FAD 273 A 1 
HETATM 26 N N3 FAD . . . B 2 13.661 22.793 -0.855 1 14.06 ? N3 FAD 273 A 1 
HETATM 27 C C4 FAD . . . B 2 13.572 22.638 0.477 1 13.53 ? C4 FAD 273 A 1 
HETATM 28 O O4 FAD . . . B 2 14.098 23.368 1.256 1 11.23 ? O4 FAD 273 A 1 
HETATM 29 C C4X FAD . . . B 2 12.739 21.467 0.925 1 13.25 ? C4X FAD 273 A 1 
HETATM 30 N N5 FAD . . . B 2 12.656 21.271 2.215 1 13.13 ? N5 FAD 273 A 1 
HETATM 31 C C5X FAD . . . B 2 11.88 20.195 2.51 1 13.48 ? C5X FAD 273 A 1 
HETATM 32 C C6 FAD . . . B 2 11.808 19.985 3.862 1 13.54 ? C6 FAD 273 A 1 
HETATM 33 C C7 FAD . . . B 2 11.054 18.971 4.323 1 13.42 ? C7 FAD 273 A 1 
HETATM 34 C C7M FAD . . . B 2 11 18.807 5.782 1 11.51 ? C7M FAD 273 A 1 
HETATM 35 C C8 FAD . . . B 2 10.329 18.145 3.427 1 13.02 ? C8 FAD 273 A 1 
HETATM 36 C C8M FAD . . . B 2 9.477 17.081 4.072 1 12.01 ? C8M FAD 273 A 1 
HETATM 37 C C9 FAD . . . B 2 10.418 18.342 2.05 1 12.11 ? C9 FAD 273 A 1 
HETATM 38 C C9A FAD . . . B 2 11.176 19.373 1.581 1 11.97 ? C9A FAD 273 A 1 
HETATM 39 N N10 FAD . . . B 2 11.298 19.644 0.31 1 12.42 ? N10 FAD 273 A 1 
HETATM 40 C C10 FAD . . . B 2 12.078 20.665 -0.095 1 13.65 ? C10 FAD 273 A 1 
HETATM 41 C C1' FAD . . . B 2 10.611 18.898 -0.737 1 15.09 ? C1' FAD 273 A 1 
HETATM 42 C C2' FAD . . . B 2 9.073 19.237 -0.883 1 16.34 ? C2' FAD 273 A 1 
HETATM 43 O O2' FAD . . . B 2 8.35 18.178 -1.765 1 16.77 ? O2' FAD 273 A 1 
HETATM 44 C C3' FAD . . . B 2 8.708 20.42 -1.769 1 18.07 ? C3' FAD 273 A 1 
HETATM 45 O O3' FAD . . . B 2 7.348 21.149 -1.506 1 23.14 ? O3' FAD 273 A 1 
HETATM 46 C C4' FAD . . . B 2 9.105 20.22 -3.143 1 16.17 ? C4' FAD 273 A 1 
HETATM 47 O O4' FAD . . . B 2 9.045 21.524 -3.587 1 12.04 ? O4' FAD 273 A 1 
HETATM 48 C C5' FAD . . . B 2 8.248 19.244 -3.925 1 15.51 ? C5' FAD 273 A 1 
HETATM 49 O O5' FAD . . . B 2 7.042 19.689 -4.563 1 15.91 ? O5' FAD 273 A 1 
HETATM 50 P P FAD . . . B 2 6.129 20.083 -5.82 1 14.08 ? P FAD 273 A 1 
HETATM 51 O O1P FAD . . . B 2 4.778 20.407 -5.469 1 15.13 ? O1P FAD 273 A 1 
HETATM 52 O O2P FAD . . . B 2 6.902 20.992 -6.691 1 15.65 ? O2P FAD 273 A 1 
HETATM 53 O O3P FAD . . . B 2 6.06 18.711 -6.634 1 15.98 ? O3P FAD 273 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#