data_1NDJ
#
_model_server_result.job_id            EgLOY1xg6HFmLZ9dWPr-Lg 
_model_server_result.datetime_utc      '2024-11-14 16:57:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ndj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":5300}' 
#
_entry.id    1NDJ 
#
_exptl.entry_id    1NDJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              244.311 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BIOTIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.9 
_cell.angle_gamma         90 
_cell.entry_id            1NDJ 
_cell.length_a            51.3 
_cell.length_b            98.4 
_cell.length_c            52.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NDJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H16 N2 O3 S' 
_chem_comp.formula_weight    244.311 
_chem_comp.id                BTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BIOTIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 BTN doub 70 n n 
C11 O12 BTN sing 71 n n 
C11 C10 BTN sing 72 n n 
O12 HO2 BTN sing 73 n n 
C10 C9 BTN sing 74 n n 
C10 H101 BTN sing 75 n n 
C10 H102 BTN sing 76 n n 
C9 C8 BTN sing 77 n n 
C9 H91 BTN sing 78 n n 
C9 H92 BTN sing 79 n n 
C8 C7 BTN sing 80 n n 
C8 H81 BTN sing 81 n n 
C8 H82 BTN sing 82 n n 
C7 C2 BTN sing 83 n n 
C7 H71 BTN sing 84 n n 
C7 H72 BTN sing 85 n n 
C2 S1 BTN sing 86 n n 
C2 C4 BTN sing 87 n n 
C2 H2 BTN sing 88 n n 
S1 C6 BTN sing 89 n n 
C6 C5 BTN sing 90 n n 
C6 H61 BTN sing 91 n n 
C6 H62 BTN sing 92 n n 
C5 N1 BTN sing 93 n n 
C5 C4 BTN sing 94 n n 
C5 H5 BTN sing 95 n n 
N1 C3 BTN sing 96 n n 
N1 HN1 BTN sing 97 n n 
C3 O3 BTN doub 98 n n 
C3 N2 BTN sing 99 n n 
N2 C4 BTN sing 100 n n 
N2 HN2 BTN sing 101 n n 
C4 H4 BTN sing 102 n n 
#
_atom_sites.entry_id                     1NDJ 
_atom_sites.fract_transf_matrix[1][1]    0.019493 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008234 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BTN A 1 5100 5100 BTN BTN . 
F 2 BTN B 1 5200 5200 BTN BTN . 
G 2 BTN C 1 5300 5300 BTN BTN . 
H 2 BTN D 1 5400 5400 BTN BTN . 
I 3 HOH A 1 6002 6002 HOH HOH . 
I 3 HOH A 2 6012 6012 HOH HOH . 
I 3 HOH A 3 6022 6022 HOH HOH . 
I 3 HOH A 4 6032 6032 HOH HOH . 
I 3 HOH A 5 6035 6035 HOH HOH . 
I 3 HOH A 6 6036 6036 HOH HOH . 
I 3 HOH A 7 6040 6040 HOH HOH . 
I 3 HOH A 8 6041 6041 HOH HOH . 
I 3 HOH A 9 6042 6042 HOH HOH . 
I 3 HOH A 10 6049 6049 HOH HOH . 
I 3 HOH A 11 6053 6053 HOH HOH . 
I 3 HOH A 12 6054 6054 HOH HOH . 
I 3 HOH A 13 6062 6062 HOH HOH . 
I 3 HOH A 14 6064 6064 HOH HOH . 
I 3 HOH A 15 6079 6079 HOH HOH . 
I 3 HOH A 16 6089 6089 HOH HOH . 
I 3 HOH A 17 6093 6093 HOH HOH . 
I 3 HOH A 18 6095 6095 HOH HOH . 
I 3 HOH A 19 6096 6096 HOH HOH . 
I 3 HOH A 20 6097 6097 HOH HOH . 
I 3 HOH A 21 6098 6098 HOH HOH . 
I 3 HOH A 22 6102 6102 HOH HOH . 
I 3 HOH A 23 6109 6109 HOH HOH . 
I 3 HOH A 24 6111 6111 HOH HOH . 
I 3 HOH A 25 6114 6114 HOH HOH . 
I 3 HOH A 26 6116 6116 HOH HOH . 
I 3 HOH A 27 6126 6126 HOH HOH . 
I 3 HOH A 28 6143 6143 HOH HOH . 
I 3 HOH A 29 6150 6150 HOH HOH . 
I 3 HOH A 30 6151 6151 HOH HOH . 
I 3 HOH A 31 6161 6161 HOH HOH . 
I 3 HOH A 32 6168 6168 HOH HOH . 
I 3 HOH A 33 6173 6173 HOH HOH . 
I 3 HOH A 34 6180 6180 HOH HOH . 
I 3 HOH A 35 6185 6185 HOH HOH . 
I 3 HOH A 36 6188 6188 HOH HOH . 
I 3 HOH A 37 6189 6189 HOH HOH . 
I 3 HOH A 38 6190 6190 HOH HOH . 
I 3 HOH A 39 6191 6191 HOH HOH . 
I 3 HOH A 40 6192 6192 HOH HOH . 
I 3 HOH A 41 6194 6194 HOH HOH . 
I 3 HOH A 42 6198 6198 HOH HOH . 
I 3 HOH A 43 6201 6201 HOH HOH . 
I 3 HOH A 44 6208 6208 HOH HOH . 
I 3 HOH A 45 6212 6212 HOH HOH . 
I 3 HOH A 46 6227 6227 HOH HOH . 
J 3 HOH B 1 6005 6005 HOH HOH . 
J 3 HOH B 2 6006 6006 HOH HOH . 
J 3 HOH B 3 6007 6007 HOH HOH . 
J 3 HOH B 4 6008 6008 HOH HOH . 
J 3 HOH B 5 6009 6009 HOH HOH . 
J 3 HOH B 6 6010 6010 HOH HOH . 
J 3 HOH B 7 6015 6015 HOH HOH . 
J 3 HOH B 8 6016 6016 HOH HOH . 
J 3 HOH B 9 6018 6018 HOH HOH . 
J 3 HOH B 10 6020 6020 HOH HOH . 
J 3 HOH B 11 6026 6026 HOH HOH . 
J 3 HOH B 12 6028 6028 HOH HOH . 
J 3 HOH B 13 6031 6031 HOH HOH . 
J 3 HOH B 14 6038 6038 HOH HOH . 
J 3 HOH B 15 6044 6044 HOH HOH . 
J 3 HOH B 16 6045 6045 HOH HOH . 
J 3 HOH B 17 6048 6048 HOH HOH . 
J 3 HOH B 18 6050 6050 HOH HOH . 
J 3 HOH B 19 6051 6051 HOH HOH . 
J 3 HOH B 20 6057 6057 HOH HOH . 
J 3 HOH B 21 6068 6068 HOH HOH . 
J 3 HOH B 22 6069 6069 HOH HOH . 
J 3 HOH B 23 6071 6071 HOH HOH . 
J 3 HOH B 24 6072 6072 HOH HOH . 
J 3 HOH B 25 6074 6074 HOH HOH . 
J 3 HOH B 26 6077 6077 HOH HOH . 
J 3 HOH B 27 6078 6078 HOH HOH . 
J 3 HOH B 28 6080 6080 HOH HOH . 
J 3 HOH B 29 6082 6082 HOH HOH . 
J 3 HOH B 30 6084 6084 HOH HOH . 
J 3 HOH B 31 6086 6086 HOH HOH . 
J 3 HOH B 32 6087 6087 HOH HOH . 
J 3 HOH B 33 6091 6091 HOH HOH . 
J 3 HOH B 34 6092 6092 HOH HOH . 
J 3 HOH B 35 6099 6099 HOH HOH . 
J 3 HOH B 36 6104 6104 HOH HOH . 
J 3 HOH B 37 6105 6105 HOH HOH . 
J 3 HOH B 38 6106 6106 HOH HOH . 
J 3 HOH B 39 6108 6108 HOH HOH . 
J 3 HOH B 40 6110 6110 HOH HOH . 
J 3 HOH B 41 6123 6123 HOH HOH . 
J 3 HOH B 42 6125 6125 HOH HOH . 
J 3 HOH B 43 6127 6127 HOH HOH . 
J 3 HOH B 44 6132 6132 HOH HOH . 
J 3 HOH B 45 6136 6136 HOH HOH . 
J 3 HOH B 46 6138 6138 HOH HOH . 
J 3 HOH B 47 6139 6139 HOH HOH . 
J 3 HOH B 48 6141 6141 HOH HOH . 
J 3 HOH B 49 6142 6142 HOH HOH . 
J 3 HOH B 50 6149 6149 HOH HOH . 
J 3 HOH B 51 6162 6162 HOH HOH . 
J 3 HOH B 52 6172 6172 HOH HOH . 
J 3 HOH B 53 6181 6181 HOH HOH . 
J 3 HOH B 54 6182 6182 HOH HOH . 
J 3 HOH B 55 6184 6184 HOH HOH . 
J 3 HOH B 56 6186 6186 HOH HOH . 
J 3 HOH B 57 6187 6187 HOH HOH . 
J 3 HOH B 58 6197 6197 HOH HOH . 
J 3 HOH B 59 6203 6203 HOH HOH . 
J 3 HOH B 60 6210 6210 HOH HOH . 
J 3 HOH B 61 6211 6211 HOH HOH . 
J 3 HOH B 62 6214 6214 HOH HOH . 
J 3 HOH B 63 6215 6215 HOH HOH . 
J 3 HOH B 64 6219 6219 HOH HOH . 
J 3 HOH B 65 6223 6223 HOH HOH . 
J 3 HOH B 66 6224 6224 HOH HOH . 
J 3 HOH B 67 6229 6229 HOH HOH . 
K 3 HOH C 1 6001 6001 HOH HOH . 
K 3 HOH C 2 6004 6004 HOH HOH . 
K 3 HOH C 3 6011 6011 HOH HOH . 
K 3 HOH C 4 6013 6013 HOH HOH . 
K 3 HOH C 5 6021 6021 HOH HOH . 
K 3 HOH C 6 6024 6024 HOH HOH . 
K 3 HOH C 7 6029 6029 HOH HOH . 
K 3 HOH C 8 6030 6030 HOH HOH . 
K 3 HOH C 9 6039 6039 HOH HOH . 
K 3 HOH C 10 6043 6043 HOH HOH . 
K 3 HOH C 11 6046 6046 HOH HOH . 
K 3 HOH C 12 6055 6055 HOH HOH . 
K 3 HOH C 13 6056 6056 HOH HOH . 
K 3 HOH C 14 6059 6059 HOH HOH . 
K 3 HOH C 15 6061 6061 HOH HOH . 
K 3 HOH C 16 6065 6065 HOH HOH . 
K 3 HOH C 17 6066 6066 HOH HOH . 
K 3 HOH C 18 6067 6067 HOH HOH . 
K 3 HOH C 19 6073 6073 HOH HOH . 
K 3 HOH C 20 6075 6075 HOH HOH . 
K 3 HOH C 21 6081 6081 HOH HOH . 
K 3 HOH C 22 6090 6090 HOH HOH . 
K 3 HOH C 23 6100 6100 HOH HOH . 
K 3 HOH C 24 6103 6103 HOH HOH . 
K 3 HOH C 25 6107 6107 HOH HOH . 
K 3 HOH C 26 6112 6112 HOH HOH . 
K 3 HOH C 27 6113 6113 HOH HOH . 
K 3 HOH C 28 6117 6117 HOH HOH . 
K 3 HOH C 29 6118 6118 HOH HOH . 
K 3 HOH C 30 6119 6119 HOH HOH . 
K 3 HOH C 31 6124 6124 HOH HOH . 
K 3 HOH C 32 6128 6128 HOH HOH . 
K 3 HOH C 33 6129 6129 HOH HOH . 
K 3 HOH C 34 6131 6131 HOH HOH . 
K 3 HOH C 35 6135 6135 HOH HOH . 
K 3 HOH C 36 6137 6137 HOH HOH . 
K 3 HOH C 37 6144 6144 HOH HOH . 
K 3 HOH C 38 6147 6147 HOH HOH . 
K 3 HOH C 39 6148 6148 HOH HOH . 
K 3 HOH C 40 6152 6152 HOH HOH . 
K 3 HOH C 41 6153 6153 HOH HOH . 
K 3 HOH C 42 6154 6154 HOH HOH . 
K 3 HOH C 43 6155 6155 HOH HOH . 
K 3 HOH C 44 6156 6156 HOH HOH . 
K 3 HOH C 45 6157 6157 HOH HOH . 
K 3 HOH C 46 6158 6158 HOH HOH . 
K 3 HOH C 47 6159 6159 HOH HOH . 
K 3 HOH C 48 6160 6160 HOH HOH . 
K 3 HOH C 49 6163 6163 HOH HOH . 
K 3 HOH C 50 6164 6164 HOH HOH . 
K 3 HOH C 51 6166 6166 HOH HOH . 
K 3 HOH C 52 6167 6167 HOH HOH . 
K 3 HOH C 53 6169 6169 HOH HOH . 
K 3 HOH C 54 6170 6170 HOH HOH . 
K 3 HOH C 55 6171 6171 HOH HOH . 
K 3 HOH C 56 6175 6175 HOH HOH . 
K 3 HOH C 57 6177 6177 HOH HOH . 
K 3 HOH C 58 6178 6178 HOH HOH . 
K 3 HOH C 59 6179 6179 HOH HOH . 
K 3 HOH C 60 6183 6183 HOH HOH . 
K 3 HOH C 61 6193 6193 HOH HOH . 
K 3 HOH C 62 6196 6196 HOH HOH . 
K 3 HOH C 63 6202 6202 HOH HOH . 
K 3 HOH C 64 6207 6207 HOH HOH . 
K 3 HOH C 65 6209 6209 HOH HOH . 
K 3 HOH C 66 6213 6213 HOH HOH . 
K 3 HOH C 67 6216 6216 HOH HOH . 
K 3 HOH C 68 6217 6217 HOH HOH . 
K 3 HOH C 69 6220 6220 HOH HOH . 
K 3 HOH C 70 6221 6221 HOH HOH . 
L 3 HOH D 1 6003 6003 HOH HOH . 
L 3 HOH D 2 6014 6014 HOH HOH . 
L 3 HOH D 3 6017 6017 HOH HOH . 
L 3 HOH D 4 6019 6019 HOH HOH . 
L 3 HOH D 5 6023 6023 HOH HOH . 
L 3 HOH D 6 6025 6025 HOH HOH . 
L 3 HOH D 7 6027 6027 HOH HOH . 
L 3 HOH D 8 6033 6033 HOH HOH . 
L 3 HOH D 9 6034 6034 HOH HOH . 
L 3 HOH D 10 6037 6037 HOH HOH . 
L 3 HOH D 11 6047 6047 HOH HOH . 
L 3 HOH D 12 6052 6052 HOH HOH . 
L 3 HOH D 13 6058 6058 HOH HOH . 
L 3 HOH D 14 6060 6060 HOH HOH . 
L 3 HOH D 15 6063 6063 HOH HOH . 
L 3 HOH D 16 6070 6070 HOH HOH . 
L 3 HOH D 17 6076 6076 HOH HOH . 
L 3 HOH D 18 6083 6083 HOH HOH . 
L 3 HOH D 19 6085 6085 HOH HOH . 
L 3 HOH D 20 6088 6088 HOH HOH . 
L 3 HOH D 21 6094 6094 HOH HOH . 
L 3 HOH D 22 6101 6101 HOH HOH . 
L 3 HOH D 23 6115 6115 HOH HOH . 
L 3 HOH D 24 6120 6120 HOH HOH . 
L 3 HOH D 25 6121 6121 HOH HOH . 
L 3 HOH D 26 6122 6122 HOH HOH . 
L 3 HOH D 27 6130 6130 HOH HOH . 
L 3 HOH D 28 6133 6133 HOH HOH . 
L 3 HOH D 29 6134 6134 HOH HOH . 
L 3 HOH D 30 6140 6140 HOH HOH . 
L 3 HOH D 31 6145 6145 HOH HOH . 
L 3 HOH D 32 6146 6146 HOH HOH . 
L 3 HOH D 33 6165 6165 HOH HOH . 
L 3 HOH D 34 6174 6174 HOH HOH . 
L 3 HOH D 35 6176 6176 HOH HOH . 
L 3 HOH D 36 6195 6195 HOH HOH . 
L 3 HOH D 37 6199 6199 HOH HOH . 
L 3 HOH D 38 6200 6200 HOH HOH . 
L 3 HOH D 39 6204 6204 HOH HOH . 
L 3 HOH D 40 6205 6205 HOH HOH . 
L 3 HOH D 41 6206 6206 HOH HOH . 
L 3 HOH D 42 6218 6218 HOH HOH . 
L 3 HOH D 43 6222 6222 HOH HOH . 
L 3 HOH D 44 6225 6225 HOH HOH . 
L 3 HOH D 45 6226 6226 HOH HOH . 
L 3 HOH D 46 6228 6228 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 BTN . . . G 2 22.136 -3.101 -2.422 1 19.69 ? C11 BTN 5300 C 1 
HETATM 2 O O11 BTN . . . G 2 23.155 -3.187 -1.691 1 30.91 ? O11 BTN 5300 C 1 
HETATM 3 O O12 BTN . . . G 2 21.538 -4.104 -2.892 1 17.06 ? O12 BTN 5300 C 1 
HETATM 4 C C10 BTN . . . G 2 21.669 -1.709 -2.654 1 19.9 ? C10 BTN 5300 C 1 
HETATM 5 C C9 BTN . . . G 2 21.931 -0.852 -1.389 1 18.1 ? C9 BTN 5300 C 1 
HETATM 6 C C8 BTN . . . G 2 21.075 -1.382 -0.246 1 19.6 ? C8 BTN 5300 C 1 
HETATM 7 C C7 BTN . . . G 2 21.337 -0.738 1.127 1 13.84 ? C7 BTN 5300 C 1 
HETATM 8 C C2 BTN . . . G 2 20.555 -1.274 2.299 1 8.68 ? C2 BTN 5300 C 1 
HETATM 9 S S1 BTN . . . G 2 18.745 -1.147 2.195 1 24.92 ? S1 BTN 5300 C 1 
HETATM 10 C C6 BTN . . . G 2 18.579 -1.597 3.942 1 15.21 ? C6 BTN 5300 C 1 
HETATM 11 C C5 BTN . . . G 2 19.721 -0.941 4.668 1 10.98 ? C5 BTN 5300 C 1 
HETATM 12 N N1 BTN . . . G 2 19.425 0.407 5.112 1 14.34 ? N1 BTN 5300 C 1 
HETATM 13 C C3 BTN . . . G 2 20.221 1.312 4.527 1 12.93 ? C3 BTN 5300 C 1 
HETATM 14 O O3 BTN . . . G 2 20.211 2.55 4.702 1 16.19 ? O3 BTN 5300 C 1 
HETATM 15 N N2 BTN . . . G 2 21.069 0.701 3.679 1 13.46 ? N2 BTN 5300 C 1 
HETATM 16 C C4 BTN . . . G 2 20.89 -0.738 3.677 1 14.05 ? C4 BTN 5300 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#