data_1NDP
#
_model_server_result.job_id            Sp5UMTe-swHSCZY20CXREQ 
_model_server_result.datetime_utc      '2025-03-02 22:18:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ndp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":161}' 
#
_entry.id    1NDP 
#
_exptl.entry_id    1NDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1NDP 
_cell.length_a            73.18 
_cell.length_b            73.18 
_cell.length_c            158.45 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1B ADP . B ADP 160 1_555 D MG MG . B MG 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 E O1A ADP . B ADP 160 1_555 D MG MG . B MG 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc3 D MG MG . B MG 161 1_555 G O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc4 D MG MG . B MG 161 1_555 G O HOH . B HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc5 D MG MG . B MG 161 1_555 G O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 D MG MG . B MG 161 1_555 G O HOH . B HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1NDP 
_atom_sites.fract_transf_matrix[1][1]    0.013665 
_atom_sites.fract_transf_matrix[1][2]    0.007889 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 160 160 ADP ADP . 
D 3 MG B 1 161 161 MG MG . 
E 2 ADP B 1 160 160 ADP ADP . 
F 4 HOH A 1 161 257 HOH HOH . 
F 4 HOH A 2 162 262 HOH HOH . 
F 4 HOH A 3 163 161 HOH HOH . 
F 4 HOH A 4 164 200 HOH HOH . 
F 4 HOH A 5 165 201 HOH HOH . 
F 4 HOH A 6 166 202 HOH HOH . 
F 4 HOH A 7 167 203 HOH HOH . 
F 4 HOH A 8 168 204 HOH HOH . 
F 4 HOH A 9 169 205 HOH HOH . 
F 4 HOH A 10 170 206 HOH HOH . 
F 4 HOH A 11 171 207 HOH HOH . 
F 4 HOH A 12 172 208 HOH HOH . 
F 4 HOH A 13 173 209 HOH HOH . 
F 4 HOH A 14 174 210 HOH HOH . 
F 4 HOH A 15 175 211 HOH HOH . 
F 4 HOH A 16 176 212 HOH HOH . 
F 4 HOH A 17 177 213 HOH HOH . 
F 4 HOH A 18 178 214 HOH HOH . 
F 4 HOH A 19 179 215 HOH HOH . 
F 4 HOH A 20 180 216 HOH HOH . 
F 4 HOH A 21 181 217 HOH HOH . 
F 4 HOH A 22 182 218 HOH HOH . 
F 4 HOH A 23 183 219 HOH HOH . 
F 4 HOH A 24 184 220 HOH HOH . 
F 4 HOH A 25 185 221 HOH HOH . 
F 4 HOH A 26 186 222 HOH HOH . 
F 4 HOH A 27 187 223 HOH HOH . 
F 4 HOH A 28 188 224 HOH HOH . 
F 4 HOH A 29 189 225 HOH HOH . 
F 4 HOH A 30 190 226 HOH HOH . 
F 4 HOH A 31 191 227 HOH HOH . 
F 4 HOH A 32 192 228 HOH HOH . 
F 4 HOH A 33 193 229 HOH HOH . 
F 4 HOH A 34 194 230 HOH HOH . 
F 4 HOH A 35 195 231 HOH HOH . 
F 4 HOH A 36 196 232 HOH HOH . 
F 4 HOH A 37 197 233 HOH HOH . 
F 4 HOH A 38 198 234 HOH HOH . 
F 4 HOH A 39 199 235 HOH HOH . 
F 4 HOH A 40 200 236 HOH HOH . 
F 4 HOH A 41 201 237 HOH HOH . 
F 4 HOH A 42 202 238 HOH HOH . 
F 4 HOH A 43 203 239 HOH HOH . 
F 4 HOH A 44 204 240 HOH HOH . 
F 4 HOH A 45 205 241 HOH HOH . 
F 4 HOH A 46 206 242 HOH HOH . 
F 4 HOH A 47 207 243 HOH HOH . 
F 4 HOH A 48 208 244 HOH HOH . 
F 4 HOH A 49 209 245 HOH HOH . 
F 4 HOH A 50 210 246 HOH HOH . 
F 4 HOH A 51 211 247 HOH HOH . 
F 4 HOH A 52 212 248 HOH HOH . 
F 4 HOH A 53 213 249 HOH HOH . 
F 4 HOH A 54 214 250 HOH HOH . 
F 4 HOH A 55 215 251 HOH HOH . 
F 4 HOH A 56 216 253 HOH HOH . 
F 4 HOH A 57 217 254 HOH HOH . 
F 4 HOH A 58 218 255 HOH HOH . 
F 4 HOH A 59 219 256 HOH HOH . 
F 4 HOH A 60 220 258 HOH HOH . 
F 4 HOH A 61 221 259 HOH HOH . 
F 4 HOH A 62 222 260 HOH HOH . 
F 4 HOH A 63 223 261 HOH HOH . 
F 4 HOH A 64 224 263 HOH HOH . 
F 4 HOH A 65 225 264 HOH HOH . 
F 4 HOH A 66 226 265 HOH HOH . 
F 4 HOH A 67 227 242 HOH HOH . 
F 4 HOH A 68 228 243 HOH HOH . 
F 4 HOH A 69 229 244 HOH HOH . 
F 4 HOH A 70 230 247 HOH HOH . 
F 4 HOH A 71 231 249 HOH HOH . 
F 4 HOH A 72 232 251 HOH HOH . 
F 4 HOH A 73 233 252 HOH HOH . 
G 4 HOH B 1 162 252 HOH HOH . 
G 4 HOH B 2 163 200 HOH HOH . 
G 4 HOH B 3 164 201 HOH HOH . 
G 4 HOH B 4 165 202 HOH HOH . 
G 4 HOH B 5 166 203 HOH HOH . 
G 4 HOH B 6 167 204 HOH HOH . 
G 4 HOH B 7 168 205 HOH HOH . 
G 4 HOH B 8 169 206 HOH HOH . 
G 4 HOH B 9 170 207 HOH HOH . 
G 4 HOH B 10 171 208 HOH HOH . 
G 4 HOH B 11 172 209 HOH HOH . 
G 4 HOH B 12 173 210 HOH HOH . 
G 4 HOH B 13 174 211 HOH HOH . 
G 4 HOH B 14 175 212 HOH HOH . 
G 4 HOH B 15 176 213 HOH HOH . 
G 4 HOH B 16 177 214 HOH HOH . 
G 4 HOH B 17 178 215 HOH HOH . 
G 4 HOH B 18 179 216 HOH HOH . 
G 4 HOH B 19 180 217 HOH HOH . 
G 4 HOH B 20 181 218 HOH HOH . 
G 4 HOH B 21 182 219 HOH HOH . 
G 4 HOH B 22 183 220 HOH HOH . 
G 4 HOH B 23 184 221 HOH HOH . 
G 4 HOH B 24 185 222 HOH HOH . 
G 4 HOH B 25 186 223 HOH HOH . 
G 4 HOH B 26 187 224 HOH HOH . 
G 4 HOH B 27 188 225 HOH HOH . 
G 4 HOH B 28 189 226 HOH HOH . 
G 4 HOH B 29 190 227 HOH HOH . 
G 4 HOH B 30 191 228 HOH HOH . 
G 4 HOH B 31 192 229 HOH HOH . 
G 4 HOH B 32 193 230 HOH HOH . 
G 4 HOH B 33 194 231 HOH HOH . 
G 4 HOH B 34 195 232 HOH HOH . 
G 4 HOH B 35 196 233 HOH HOH . 
G 4 HOH B 36 197 234 HOH HOH . 
G 4 HOH B 37 198 235 HOH HOH . 
G 4 HOH B 38 199 236 HOH HOH . 
G 4 HOH B 39 200 237 HOH HOH . 
G 4 HOH B 40 201 238 HOH HOH . 
G 4 HOH B 41 202 239 HOH HOH . 
G 4 HOH B 42 203 240 HOH HOH . 
G 4 HOH B 43 204 241 HOH HOH . 
G 4 HOH B 44 205 245 HOH HOH . 
G 4 HOH B 45 206 246 HOH HOH . 
G 4 HOH B 46 207 248 HOH HOH . 
G 4 HOH B 47 208 250 HOH HOH . 
G 4 HOH B 48 209 253 HOH HOH . 
G 4 HOH B 49 210 254 HOH HOH . 
G 4 HOH B 50 211 255 HOH HOH . 
G 4 HOH B 51 212 256 HOH HOH . 
G 4 HOH B 52 213 257 HOH HOH . 
G 4 HOH B 53 214 258 HOH HOH . 
G 4 HOH B 54 215 259 HOH HOH . 
G 4 HOH B 55 216 260 HOH HOH . 
G 4 HOH B 56 217 261 HOH HOH . 
G 4 HOH B 57 218 262 HOH HOH . 
G 4 HOH B 58 219 263 HOH HOH . 
G 4 HOH B 59 220 264 HOH HOH . 
G 4 HOH B 60 221 265 HOH HOH . 
G 4 HOH B 61 222 266 HOH HOH . 
G 4 HOH B 62 223 267 HOH HOH . 
G 4 HOH B 63 224 268 HOH HOH . 
G 4 HOH B 64 225 269 HOH HOH . 
G 4 HOH B 65 226 270 HOH HOH . 
G 4 HOH B 66 227 271 HOH HOH . 
G 4 HOH B 67 228 272 HOH HOH . 
G 4 HOH B 68 229 273 HOH HOH . 
G 4 HOH B 69 230 274 HOH HOH . 
G 4 HOH B 70 231 275 HOH HOH . 
G 4 HOH B 71 232 276 HOH HOH . 
G 4 HOH B 72 233 277 HOH HOH . 
G 4 HOH B 73 234 278 HOH HOH . 
G 4 HOH B 74 235 279 HOH HOH . 
G 4 HOH B 75 236 280 HOH HOH . 
G 4 HOH B 76 237 281 HOH HOH . 
G 4 HOH B 77 238 282 HOH HOH . 
G 4 HOH B 78 239 283 HOH HOH . 
G 4 HOH B 79 240 284 HOH HOH . 
G 4 HOH B 80 241 285 HOH HOH . 
G 4 HOH B 81 242 286 HOH HOH . 
G 4 HOH B 82 243 287 HOH HOH . 
G 4 HOH B 83 244 288 HOH HOH . 
G 4 HOH B 84 245 289 HOH HOH . 
G 4 HOH B 85 246 290 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.161 
_atom_site.Cartn_y               -0.04 
_atom_site.Cartn_z               21.882 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           161 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#