data_1NDR # _model_server_result.job_id zkHat7SLED4mwOlQVTTXvA _model_server_result.datetime_utc '2025-09-07 15:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ndr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1NDR # _exptl.entry_id 1NDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NDR _cell.length_a 67.15 _cell.length_b 101.72 _cell.length_c 150.38 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 85 A HIS 95 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc2 A NE2 HIS 90 A HIS 100 1_555 E CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A NE2 HIS 125 A HIS 135 1_555 E CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 A SG CYS 126 A CYS 136 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 A ND1 HIS 135 A HIS 145 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc6 A SD MET 140 A MET 150 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 A NE2 HIS 296 A HIS 306 1_555 I CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 E CU CU . A CU 502 1_555 J O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc9 E CU CU . A CU 502 1_555 B NE2 HIS 296 B HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc10 J O HOH . A HOH 504 1_555 I CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.68 ? metalc ? metalc11 B ND1 HIS 85 B HIS 95 1_555 F CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc12 B NE2 HIS 90 B HIS 100 1_555 G CU CU . B CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc13 B NE2 HIS 125 B HIS 135 1_555 G CU CU . B CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc14 B SG CYS 126 B CYS 136 1_555 F CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc15 B ND1 HIS 135 B HIS 145 1_555 F CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc16 B SD MET 140 B MET 150 1_555 F CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc17 G CU CU . B CU 502 1_555 K O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? metalc ? metalc18 G CU CU . B CU 502 1_555 C NE2 HIS 296 C HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc19 C ND1 HIS 85 C HIS 95 1_555 H CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc20 C NE2 HIS 90 C HIS 100 1_555 I CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc21 C NE2 HIS 125 C HIS 135 1_555 I CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc22 C SG CYS 126 C CYS 136 1_555 H CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc23 C ND1 HIS 135 C HIS 145 1_555 H CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc24 C SD MET 140 C MET 150 1_555 H CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1NDR _atom_sites.fract_transf_matrix[1][1] 0.014892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CU A 1 501 501 CU CU . E 2 CU A 1 502 502 CU CU . F 2 CU B 1 501 501 CU CU . G 2 CU B 1 502 502 CU CU . H 2 CU C 1 501 501 CU CU . I 2 CU C 1 502 502 CU CU . J 3 HOH A 1 503 503 HOH HOH . J 3 HOH A 2 504 503 HOH HOH . K 3 HOH B 1 503 503 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.214 _atom_site.Cartn_y 17.035 _atom_site.Cartn_z 14.955 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #