data_1NDS # _model_server_result.job_id uCGFj2hwyFOhUqN8HIg9Yg _model_server_result.datetime_utc '2024-12-26 16:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 1NDS # _exptl.entry_id 1NDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NDS _cell.length_a 67.89 _cell.length_b 102.2 _cell.length_c 151.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 85 A HIS 95 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A NE2 HIS 90 A HIS 100 1_555 E CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 A NE2 HIS 125 A HIS 135 1_555 E CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 A SG CYS 126 A CYS 136 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 A ND1 HIS 135 A HIS 145 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 A SD MET 140 A MET 150 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc7 A NE2 HIS 296 A HIS 306 1_555 K CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc8 E CU CU . A CU 502 1_555 F O1 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc9 E CU CU . A CU 502 1_555 F O2 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? metalc ? metalc10 E CU CU . A CU 502 1_555 F N NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 E CU CU . A CU 502 1_555 B NE2 HIS 296 B HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc12 B ND1 HIS 85 B HIS 95 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc13 B NE2 HIS 90 B HIS 100 1_555 H CU CU . B CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 B NE2 HIS 125 B HIS 135 1_555 H CU CU . B CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc15 B SG CYS 126 B CYS 136 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc16 B ND1 HIS 135 B HIS 145 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc17 B SD MET 140 B MET 150 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc18 H CU CU . B CU 502 1_555 I O2 NO2 . B NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc19 H CU CU . B CU 502 1_555 I N NO2 . B NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc20 H CU CU . B CU 502 1_555 I O1 NO2 . B NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc21 H CU CU . B CU 502 1_555 C NE2 HIS 296 C HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc22 C ND1 HIS 85 C HIS 95 1_555 J CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc23 C NE2 HIS 90 C HIS 100 1_555 K CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc24 C NE2 HIS 125 C HIS 135 1_555 K CU CU . C CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc25 C SG CYS 126 C CYS 136 1_555 J CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc26 C ND1 HIS 135 C HIS 145 1_555 J CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc27 C SD MET 140 C MET 150 1_555 J CU CU . C CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc28 K CU CU . C CU 502 1_555 L O2 NO2 . C NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? metalc ? metalc29 K CU CU . C CU 502 1_555 L O1 NO2 . C NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc30 K CU CU . C CU 502 1_555 L N NO2 . C NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 237 n n N O2 NO2 sing 238 n n # _atom_sites.entry_id 1NDS _atom_sites.fract_transf_matrix[1][1] 0.01473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CU A 1 501 501 CU CU . E 2 CU A 1 502 502 CU CU . F 3 NO2 A 1 503 503 NO2 NO2 . G 2 CU B 1 501 501 CU CU . H 2 CU B 1 502 502 CU CU . I 3 NO2 B 1 503 503 NO2 NO2 . J 2 CU C 1 501 501 CU CU . K 2 CU C 1 502 502 CU CU . L 3 NO2 C 1 503 503 NO2 NO2 . M 4 HOH A 1 1 504 HOH HOH . N 4 HOH B 1 2 504 HOH HOH . O 4 HOH C 1 3 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . I 3 28.091 51.041 40.248 1 29.26 ? N NO2 503 B 1 HETATM 2 O O1 NO2 . . . I 3 29.068 50.338 40.614 1 29.26 ? O1 NO2 503 B 1 HETATM 3 O O2 NO2 . . . I 3 26.998 50.322 40.174 1 29.26 ? O2 NO2 503 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #