data_1NE4
#
_model_server_result.job_id            IwSXLrtWk6Z4KfvpQ_18nA 
_model_server_result.datetime_utc      '2024-12-02 17:56:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ne4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    1NE4 
#
_exptl.entry_id    1NE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.272 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1NE4 
_cell.length_a            86.9 
_cell.length_b            86.9 
_cell.length_c            179 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C10 H12 N5 O5 P S' 
_chem_comp.formula_weight    345.272 
_chem_comp.id                RP1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "RP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P S1P RP1 doub 277 n n 
P O2P RP1 sing 278 n n 
P O5' RP1 sing 279 n n 
P O3' RP1 sing 280 n n 
O2P HOP2 RP1 sing 281 n n 
O5' C5' RP1 sing 282 n n 
C5' C4' RP1 sing 283 n n 
C5' "H5'1" RP1 sing 284 n n 
C5' "H5'2" RP1 sing 285 n n 
C4' O4' RP1 sing 286 n n 
C4' C3' RP1 sing 287 n n 
C4' H4' RP1 sing 288 n n 
O4' C1' RP1 sing 289 n n 
C3' O3' RP1 sing 290 n n 
C3' C2' RP1 sing 291 n n 
C3' H3' RP1 sing 292 n n 
C2' O2' RP1 sing 293 n n 
C2' C1' RP1 sing 294 n n 
C2' H2' RP1 sing 295 n n 
O2' HO2' RP1 sing 296 n n 
C1' N9 RP1 sing 297 n n 
C1' H1' RP1 sing 298 n n 
N9 C8 RP1 sing 299 n y 
N9 C4 RP1 sing 300 n y 
C8 N7 RP1 doub 301 n y 
C8 H8 RP1 sing 302 n n 
N7 C5 RP1 sing 303 n y 
C5 C6 RP1 doub 304 n y 
C5 C4 RP1 sing 305 n y 
C6 N6 RP1 sing 306 n n 
C6 N1 RP1 sing 307 n y 
N6 HN61 RP1 sing 308 n n 
N6 HN62 RP1 sing 309 n n 
N1 C2 RP1 doub 310 n y 
C2 N3 RP1 sing 311 n y 
C2 H2 RP1 sing 312 n n 
N3 C4 RP1 doub 313 n y 
#
_atom_sites.entry_id                     1NE4 
_atom_sites.fract_transf_matrix[1][1]    0.011507 
_atom_sites.fract_transf_matrix[1][2]    0.006644 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RP1 A 1 401 401 RP1 RP . 
C 2 RP1 A 1 601 601 RP1 RP . 
D 3 HOH A 1 701 701 HOH WAT . 
D 3 HOH A 2 702 702 HOH WAT . 
D 3 HOH A 3 703 703 HOH WAT . 
D 3 HOH A 4 704 704 HOH WAT . 
D 3 HOH A 5 705 705 HOH WAT . 
D 3 HOH A 6 706 706 HOH WAT . 
D 3 HOH A 7 707 707 HOH WAT . 
D 3 HOH A 8 708 708 HOH WAT . 
D 3 HOH A 9 709 709 HOH WAT . 
D 3 HOH A 10 710 710 HOH WAT . 
D 3 HOH A 11 711 711 HOH WAT . 
D 3 HOH A 12 712 712 HOH WAT . 
D 3 HOH A 13 713 713 HOH WAT . 
D 3 HOH A 14 714 714 HOH WAT . 
D 3 HOH A 15 715 715 HOH WAT . 
D 3 HOH A 16 716 716 HOH WAT . 
D 3 HOH A 17 717 717 HOH WAT . 
D 3 HOH A 18 718 718 HOH WAT . 
D 3 HOH A 19 719 719 HOH WAT . 
D 3 HOH A 20 720 720 HOH WAT . 
D 3 HOH A 21 721 721 HOH WAT . 
D 3 HOH A 22 722 722 HOH WAT . 
D 3 HOH A 23 723 723 HOH WAT . 
D 3 HOH A 24 724 724 HOH WAT . 
D 3 HOH A 25 725 725 HOH WAT . 
D 3 HOH A 26 726 726 HOH WAT . 
D 3 HOH A 27 727 727 HOH WAT . 
D 3 HOH A 28 728 728 HOH WAT . 
D 3 HOH A 29 729 729 HOH WAT . 
D 3 HOH A 30 730 730 HOH WAT . 
D 3 HOH A 31 731 731 HOH WAT . 
D 3 HOH A 32 732 732 HOH WAT . 
D 3 HOH A 33 733 733 HOH WAT . 
D 3 HOH A 34 734 734 HOH WAT . 
D 3 HOH A 35 735 735 HOH WAT . 
D 3 HOH A 36 736 736 HOH WAT . 
D 3 HOH A 37 737 737 HOH WAT . 
D 3 HOH A 38 738 738 HOH WAT . 
D 3 HOH A 39 739 739 HOH WAT . 
D 3 HOH A 40 740 740 HOH WAT . 
D 3 HOH A 41 741 741 HOH WAT . 
D 3 HOH A 42 742 742 HOH WAT . 
D 3 HOH A 43 743 743 HOH WAT . 
D 3 HOH A 44 744 744 HOH WAT . 
D 3 HOH A 45 745 745 HOH WAT . 
D 3 HOH A 46 746 746 HOH WAT . 
D 3 HOH A 47 747 747 HOH WAT . 
D 3 HOH A 48 748 748 HOH WAT . 
D 3 HOH A 49 749 749 HOH WAT . 
D 3 HOH A 50 750 750 HOH WAT . 
D 3 HOH A 51 751 751 HOH WAT . 
D 3 HOH A 52 752 752 HOH WAT . 
D 3 HOH A 53 753 753 HOH WAT . 
D 3 HOH A 54 754 754 HOH WAT . 
D 3 HOH A 55 755 755 HOH WAT . 
D 3 HOH A 56 756 756 HOH WAT . 
D 3 HOH A 57 757 757 HOH WAT . 
D 3 HOH A 58 758 758 HOH WAT . 
D 3 HOH A 59 759 759 HOH WAT . 
D 3 HOH A 60 760 760 HOH WAT . 
D 3 HOH A 61 761 761 HOH WAT . 
D 3 HOH A 62 762 762 HOH WAT . 
D 3 HOH A 63 763 763 HOH WAT . 
D 3 HOH A 64 764 764 HOH WAT . 
D 3 HOH A 65 765 765 HOH WAT . 
D 3 HOH A 66 766 766 HOH WAT . 
D 3 HOH A 67 767 767 HOH WAT . 
D 3 HOH A 68 768 768 HOH WAT . 
D 3 HOH A 69 769 769 HOH WAT . 
D 3 HOH A 70 770 770 HOH WAT . 
D 3 HOH A 71 771 771 HOH WAT . 
D 3 HOH A 72 772 772 HOH WAT . 
D 3 HOH A 73 773 773 HOH WAT . 
D 3 HOH A 74 774 774 HOH WAT . 
D 3 HOH A 75 775 775 HOH WAT . 
D 3 HOH A 76 776 776 HOH WAT . 
D 3 HOH A 77 777 777 HOH WAT . 
D 3 HOH A 78 778 778 HOH WAT . 
D 3 HOH A 79 779 779 HOH WAT . 
D 3 HOH A 80 780 780 HOH WAT . 
D 3 HOH A 81 781 781 HOH WAT . 
D 3 HOH A 82 782 782 HOH WAT . 
D 3 HOH A 83 783 783 HOH WAT . 
D 3 HOH A 84 784 784 HOH WAT . 
D 3 HOH A 85 785 785 HOH WAT . 
D 3 HOH A 86 786 786 HOH WAT . 
D 3 HOH A 87 787 787 HOH WAT . 
D 3 HOH A 88 788 788 HOH WAT . 
D 3 HOH A 89 789 789 HOH WAT . 
D 3 HOH A 90 790 790 HOH WAT . 
D 3 HOH A 91 791 791 HOH WAT . 
D 3 HOH A 92 792 792 HOH WAT . 
D 3 HOH A 93 793 793 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P RP1 . . . C 2 73.311 49.957 95.252 1 61.85 ? P RP1 601 A 1 
HETATM 2 S S1P RP1 . . . C 2 71.837 50.856 95.606 1 66.91 ? S1P RP1 601 A 1 
HETATM 3 O O2P RP1 . . . C 2 74.146 49.464 96.373 1 64.42 ? O2P RP1 601 A 1 
HETATM 4 O O5' RP1 . . . C 2 74.225 50.808 94.246 1 61.65 ? O5' RP1 601 A 1 
HETATM 5 C C5' RP1 . . . C 2 75.114 50.152 93.313 1 62.09 ? C5' RP1 601 A 1 
HETATM 6 C C4' RP1 . . . C 2 74.38 49.012 92.661 1 61.29 ? C4' RP1 601 A 1 
HETATM 7 O O4' RP1 . . . C 2 75.195 48.204 91.785 1 62.03 ? O4' RP1 601 A 1 
HETATM 8 C C3' RP1 . . . C 2 73.931 48.004 93.681 1 60.51 ? C3' RP1 601 A 1 
HETATM 9 O O3' RP1 . . . C 2 72.914 48.659 94.399 1 62.47 ? O3' RP1 601 A 1 
HETATM 10 C C2' RP1 . . . C 2 73.538 46.83 92.804 1 60.78 ? C2' RP1 601 A 1 
HETATM 11 O O2' RP1 . . . C 2 72.286 47.025 92.195 1 60.41 ? O2' RP1 601 A 1 
HETATM 12 C C1' RP1 . . . C 2 74.63 46.896 91.733 1 63.27 ? C1' RP1 601 A 1 
HETATM 13 N N9 RP1 . . . C 2 75.695 45.903 91.889 1 66.68 ? N9 RP1 601 A 1 
HETATM 14 C C8 RP1 . . . C 2 76.13 45.019 90.928 1 67.68 ? C8 RP1 601 A 1 
HETATM 15 N N7 RP1 . . . C 2 77.085 44.22 91.335 1 69.09 ? N7 RP1 601 A 1 
HETATM 16 C C5 RP1 . . . C 2 77.301 44.602 92.653 1 69.53 ? C5 RP1 601 A 1 
HETATM 17 C C6 RP1 . . . C 2 78.187 44.128 93.641 1 69.27 ? C6 RP1 601 A 1 
HETATM 18 N N6 RP1 . . . C 2 79.048 43.129 93.44 1 67.45 ? N6 RP1 601 A 1 
HETATM 19 N N1 RP1 . . . C 2 78.152 44.721 94.856 1 69.35 ? N1 RP1 601 A 1 
HETATM 20 C C2 RP1 . . . C 2 77.278 45.721 95.055 1 70.55 ? C2 RP1 601 A 1 
HETATM 21 N N3 RP1 . . . C 2 76.392 46.253 94.207 1 70.09 ? N3 RP1 601 A 1 
HETATM 22 C C4 RP1 . . . C 2 76.454 45.641 93.009 1 68.43 ? C4 RP1 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#