data_1NEP
#
_model_server_result.job_id            tsWnvSrszuEp3YuNzGpBxg 
_model_server_result.datetime_utc      '2024-11-29 16:34:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nep 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":402}' 
#
_entry.id    1NEP 
#
_exptl.entry_id    1NEP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NEP 
_cell.length_a            100.157 
_cell.length_b            100.157 
_cell.length_c            100.157 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NEP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 23 A CYS 23 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1NEP 
_atom_sites.fract_transf_matrix[1][1]    0.009984 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 402 402 NAG NAG . 
C 3 PO4 A 1 401 401 PO4 PO4 . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
D 4 HOH A 12 212 212 HOH HOH . 
D 4 HOH A 13 213 213 HOH HOH . 
D 4 HOH A 14 214 214 HOH HOH . 
D 4 HOH A 15 215 215 HOH HOH . 
D 4 HOH A 16 216 216 HOH HOH . 
D 4 HOH A 17 217 217 HOH HOH . 
D 4 HOH A 18 218 218 HOH HOH . 
D 4 HOH A 19 219 219 HOH HOH . 
D 4 HOH A 20 220 220 HOH HOH . 
D 4 HOH A 21 221 221 HOH HOH . 
D 4 HOH A 22 222 222 HOH HOH . 
D 4 HOH A 23 223 223 HOH HOH . 
D 4 HOH A 24 224 224 HOH HOH . 
D 4 HOH A 25 225 225 HOH HOH . 
D 4 HOH A 26 226 226 HOH HOH . 
D 4 HOH A 27 227 227 HOH HOH . 
D 4 HOH A 28 228 228 HOH HOH . 
D 4 HOH A 29 229 229 HOH HOH . 
D 4 HOH A 30 230 230 HOH HOH . 
D 4 HOH A 31 231 231 HOH HOH . 
D 4 HOH A 32 232 232 HOH HOH . 
D 4 HOH A 33 233 233 HOH HOH . 
D 4 HOH A 34 234 234 HOH HOH . 
D 4 HOH A 35 235 235 HOH HOH . 
D 4 HOH A 36 236 236 HOH HOH . 
D 4 HOH A 37 237 237 HOH HOH . 
D 4 HOH A 38 238 238 HOH HOH . 
D 4 HOH A 39 240 240 HOH HOH . 
D 4 HOH A 40 241 241 HOH HOH . 
D 4 HOH A 41 242 242 HOH HOH . 
D 4 HOH A 42 243 243 HOH HOH . 
D 4 HOH A 43 244 244 HOH HOH . 
D 4 HOH A 44 245 245 HOH HOH . 
D 4 HOH A 45 246 246 HOH HOH . 
D 4 HOH A 46 247 247 HOH HOH . 
D 4 HOH A 47 248 248 HOH HOH . 
D 4 HOH A 48 249 249 HOH HOH . 
D 4 HOH A 49 250 250 HOH HOH . 
D 4 HOH A 50 251 251 HOH HOH . 
D 4 HOH A 51 252 252 HOH HOH . 
D 4 HOH A 52 253 253 HOH HOH . 
D 4 HOH A 53 254 254 HOH HOH . 
D 4 HOH A 54 255 255 HOH HOH . 
D 4 HOH A 55 256 256 HOH HOH . 
D 4 HOH A 56 257 257 HOH HOH . 
D 4 HOH A 57 258 258 HOH HOH . 
D 4 HOH A 58 259 259 HOH HOH . 
D 4 HOH A 59 260 260 HOH HOH . 
D 4 HOH A 60 261 261 HOH HOH . 
D 4 HOH A 61 262 262 HOH HOH . 
D 4 HOH A 62 263 263 HOH HOH . 
D 4 HOH A 63 264 264 HOH HOH . 
D 4 HOH A 64 265 265 HOH HOH . 
D 4 HOH A 65 266 266 HOH HOH . 
D 4 HOH A 66 267 267 HOH HOH . 
D 4 HOH A 67 268 268 HOH HOH . 
D 4 HOH A 68 269 269 HOH HOH . 
D 4 HOH A 69 270 270 HOH HOH . 
D 4 HOH A 70 271 271 HOH HOH . 
D 4 HOH A 71 272 272 HOH HOH . 
D 4 HOH A 72 273 273 HOH HOH . 
D 4 HOH A 73 274 274 HOH HOH . 
D 4 HOH A 74 275 275 HOH HOH . 
D 4 HOH A 75 276 276 HOH HOH . 
D 4 HOH A 76 277 277 HOH HOH . 
D 4 HOH A 77 278 278 HOH HOH . 
D 4 HOH A 78 279 279 HOH HOH . 
D 4 HOH A 79 280 280 HOH HOH . 
D 4 HOH A 80 281 281 HOH HOH . 
D 4 HOH A 81 282 282 HOH HOH . 
D 4 HOH A 82 283 283 HOH HOH . 
D 4 HOH A 83 284 284 HOH HOH . 
D 4 HOH A 84 285 285 HOH HOH . 
D 4 HOH A 85 286 286 HOH HOH . 
D 4 HOH A 86 287 287 HOH HOH . 
D 4 HOH A 87 288 288 HOH HOH . 
D 4 HOH A 88 289 289 HOH HOH . 
D 4 HOH A 89 290 290 HOH HOH . 
D 4 HOH A 90 291 291 HOH HOH . 
D 4 HOH A 91 292 292 HOH HOH . 
D 4 HOH A 92 293 293 HOH HOH . 
D 4 HOH A 93 294 294 HOH HOH . 
D 4 HOH A 94 295 295 HOH HOH . 
D 4 HOH A 95 296 296 HOH HOH . 
D 4 HOH A 96 297 297 HOH HOH . 
D 4 HOH A 97 298 298 HOH HOH . 
D 4 HOH A 98 299 299 HOH HOH . 
D 4 HOH A 99 300 300 HOH HOH . 
D 4 HOH A 100 301 301 HOH HOH . 
D 4 HOH A 101 302 302 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 56.558 -29.227 71.489 1 20.8 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . B 2 56.918 -29.42 69.958 1 23.01 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . B 2 57.666 -30.802 69.877 1 24.49 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . B 2 58.968 -30.767 70.743 1 25.07 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . B 2 58.586 -30.427 72.26 1 24.8 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . B 2 59.72 -30.171 73.145 1 25.9 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . B 2 55.153 -28.762 68.285 1 25.33 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . B 2 54.027 -29.348 67.573 1 26.73 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . B 2 55.647 -29.582 69.247 1 24.18 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . B 2 57.97 -31.003 68.485 1 25.28 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . B 2 59.527 -32.099 70.719 1 26.35 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . B 2 57.764 -29.154 72.236 1 22.67 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . B 2 59.352 -30.354 74.472 1 28.71 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . B 2 55.274 -27.6 68.315 1 27.7 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#