data_1NF7
#
_model_server_result.job_id            888gSqUQNagAid3YGgpV-Q 
_model_server_result.datetime_utc      '2024-11-01 14:42:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1nf7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    1NF7 
#
_exptl.entry_id    1NF7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.185 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RIBAVIRIN MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1NF7 
_cell.length_a            146.58 
_cell.length_b            146.58 
_cell.length_c            128.92 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1NF7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,T 1 1,2,3,4 
B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,U 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 146.58 146.58 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 146.58 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 146.58 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 328 A GLY 328 1_555 C K K . A K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
metalc ? metalc2 A O CYS 331 A CYS 331 1_555 C K K . A K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc3 B O GLY 328 B GLY 328 1_555 F K K . B K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? 
metalc ? metalc4 B O CYS 331 B CYS 331 1_555 F K K . B K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
#
_chem_comp.formula           'C8 H13 N4 O8 P' 
_chem_comp.formula_weight    324.185 
_chem_comp.id                RVP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RIBAVIRIN MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P RVP sing 353 n n 
P O2P RVP sing 354 n n 
P O3P RVP doub 355 n n 
P O5' RVP sing 356 n n 
O1P HOP1 RVP sing 357 n n 
O2P HOP2 RVP sing 358 n n 
O5' C5' RVP sing 359 n n 
C5' C4' RVP sing 360 n n 
C5' "H5'1" RVP sing 361 n n 
C5' "H5'2" RVP sing 362 n n 
C4' O4' RVP sing 363 n n 
C4' C3' RVP sing 364 n n 
C4' H4' RVP sing 365 n n 
O4' C1' RVP sing 366 n n 
C3' O3' RVP sing 367 n n 
C3' C2' RVP sing 368 n n 
C3' H3' RVP sing 369 n n 
O3' "HO'3" RVP sing 370 n n 
C2' O2' RVP sing 371 n n 
C2' C1' RVP sing 372 n n 
C2' H2' RVP sing 373 n n 
O2' "HO'2" RVP sing 374 n n 
C1' N9 RVP sing 375 n n 
C1' H1' RVP sing 376 n n 
N9 C8 RVP sing 377 n y 
N9 N4 RVP sing 378 n y 
C8 N7 RVP doub 379 n y 
C8 HC8 RVP sing 380 n n 
N7 C5 RVP sing 381 n y 
C5 C6 RVP sing 382 n n 
C5 N4 RVP doub 383 n y 
C6 O6 RVP doub 384 n n 
C6 N1 RVP sing 385 n n 
N1 HN1 RVP sing 386 n n 
N1 HN2 RVP sing 387 n n 
#
_atom_sites.entry_id                     1NF7 
_atom_sites.fract_transf_matrix[1][1]    0.006822 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K A 1 902 902 K K . 
D 3 RVP A 1 600 600 RVP RMP . 
E 4 MYD A 1 701 701 MYD MAD . 
F 2 K B 1 901 901 K K . 
G 3 RVP B 1 601 601 RVP RMP . 
H 4 MYD B 1 702 702 MYD MAD . 
I 5 UNK B 1 801 801 UNK DUM . 
J 5 UNK B 1 802 802 UNK DUM . 
K 5 UNK B 1 803 803 UNK DUM . 
L 5 UNK B 1 804 804 UNK DUM . 
M 5 UNK B 1 805 805 UNK DUM . 
N 5 UNK B 1 806 806 UNK DUM . 
O 5 UNK B 1 807 807 UNK DUM . 
P 5 UNK B 1 808 808 UNK DUM . 
Q 5 UNK B 1 809 809 UNK DUM . 
R 5 UNK B 1 810 810 UNK DUM . 
S 5 UNK B 1 811 811 UNK DUM . 
T 6 HOH A 1 903 1 HOH HOH . 
T 6 HOH A 2 904 2 HOH HOH . 
T 6 HOH A 3 905 3 HOH HOH . 
T 6 HOH A 4 906 4 HOH HOH . 
T 6 HOH A 5 907 5 HOH HOH . 
T 6 HOH A 6 908 6 HOH HOH . 
T 6 HOH A 7 909 7 HOH HOH . 
T 6 HOH A 8 910 8 HOH HOH . 
T 6 HOH A 9 911 9 HOH HOH . 
T 6 HOH A 10 912 10 HOH HOH . 
T 6 HOH A 11 913 11 HOH HOH . 
T 6 HOH A 12 914 12 HOH HOH . 
T 6 HOH A 13 915 13 HOH HOH . 
T 6 HOH A 14 916 14 HOH HOH . 
T 6 HOH A 15 917 15 HOH HOH . 
T 6 HOH A 16 918 16 HOH HOH . 
T 6 HOH A 17 919 17 HOH HOH . 
T 6 HOH A 18 920 18 HOH HOH . 
T 6 HOH A 19 921 21 HOH HOH . 
T 6 HOH A 20 922 22 HOH HOH . 
T 6 HOH A 21 923 23 HOH HOH . 
T 6 HOH A 22 924 24 HOH HOH . 
T 6 HOH A 23 925 25 HOH HOH . 
T 6 HOH A 24 926 26 HOH HOH . 
T 6 HOH A 25 927 27 HOH HOH . 
T 6 HOH A 26 928 28 HOH HOH . 
T 6 HOH A 27 929 61 HOH HOH . 
T 6 HOH A 28 930 62 HOH HOH . 
T 6 HOH A 29 931 63 HOH HOH . 
T 6 HOH A 30 932 64 HOH HOH . 
T 6 HOH A 31 933 65 HOH HOH . 
T 6 HOH A 32 934 66 HOH HOH . 
T 6 HOH A 33 935 67 HOH HOH . 
T 6 HOH A 34 936 68 HOH HOH . 
T 6 HOH A 35 937 69 HOH HOH . 
T 6 HOH A 36 938 70 HOH HOH . 
T 6 HOH A 37 939 71 HOH HOH . 
T 6 HOH A 38 940 72 HOH HOH . 
T 6 HOH A 39 941 73 HOH HOH . 
T 6 HOH A 40 942 74 HOH HOH . 
T 6 HOH A 41 943 75 HOH HOH . 
T 6 HOH A 42 944 90 HOH HOH . 
T 6 HOH A 43 945 91 HOH HOH . 
T 6 HOH A 44 946 92 HOH HOH . 
T 6 HOH A 45 947 93 HOH HOH . 
T 6 HOH A 46 948 94 HOH HOH . 
U 6 HOH B 1 902 19 HOH HOH . 
U 6 HOH B 2 903 20 HOH HOH . 
U 6 HOH B 3 904 29 HOH HOH . 
U 6 HOH B 4 905 30 HOH HOH . 
U 6 HOH B 5 906 31 HOH HOH . 
U 6 HOH B 6 907 32 HOH HOH . 
U 6 HOH B 7 908 33 HOH HOH . 
U 6 HOH B 8 909 34 HOH HOH . 
U 6 HOH B 9 910 35 HOH HOH . 
U 6 HOH B 10 911 36 HOH HOH . 
U 6 HOH B 11 912 37 HOH HOH . 
U 6 HOH B 12 913 38 HOH HOH . 
U 6 HOH B 13 914 39 HOH HOH . 
U 6 HOH B 14 915 40 HOH HOH . 
U 6 HOH B 15 916 41 HOH HOH . 
U 6 HOH B 16 917 42 HOH HOH . 
U 6 HOH B 17 918 43 HOH HOH . 
U 6 HOH B 18 919 44 HOH HOH . 
U 6 HOH B 19 920 45 HOH HOH . 
U 6 HOH B 20 921 46 HOH HOH . 
U 6 HOH B 21 922 47 HOH HOH . 
U 6 HOH B 22 923 48 HOH HOH . 
U 6 HOH B 23 924 49 HOH HOH . 
U 6 HOH B 24 925 50 HOH HOH . 
U 6 HOH B 25 926 52 HOH HOH . 
U 6 HOH B 26 927 53 HOH HOH . 
U 6 HOH B 27 928 54 HOH HOH . 
U 6 HOH B 28 929 55 HOH HOH . 
U 6 HOH B 29 930 56 HOH HOH . 
U 6 HOH B 30 931 57 HOH HOH . 
U 6 HOH B 31 932 58 HOH HOH . 
U 6 HOH B 32 933 59 HOH HOH . 
U 6 HOH B 33 934 60 HOH HOH . 
U 6 HOH B 34 935 76 HOH HOH . 
U 6 HOH B 35 936 77 HOH HOH . 
U 6 HOH B 36 937 78 HOH HOH . 
U 6 HOH B 37 938 79 HOH HOH . 
U 6 HOH B 38 939 80 HOH HOH . 
U 6 HOH B 39 940 81 HOH HOH . 
U 6 HOH B 40 941 82 HOH HOH . 
U 6 HOH B 41 942 83 HOH HOH . 
U 6 HOH B 42 943 84 HOH HOH . 
U 6 HOH B 43 944 85 HOH HOH . 
U 6 HOH B 44 945 86 HOH HOH . 
U 6 HOH B 45 946 87 HOH HOH . 
U 6 HOH B 46 947 88 HOH HOH . 
U 6 HOH B 47 948 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P RVP . . . D 3 67.59 51.612 -5.607 1 53.84 ? P RVP 600 A 1 
HETATM 2 O O1P RVP . . . D 3 67.293 51.651 -7.078 1 53.75 ? O1P RVP 600 A 1 
HETATM 3 O O2P RVP . . . D 3 68.7 50.729 -5.114 1 53.76 ? O2P RVP 600 A 1 
HETATM 4 O O3P RVP . . . D 3 67.902 53.152 -5.121 1 53.75 ? O3P RVP 600 A 1 
HETATM 5 O O5' RVP . . . D 3 66.199 51.254 -4.802 1 53.78 ? O5' RVP 600 A 1 
HETATM 6 C C5' RVP . . . D 3 65.44 50.083 -5.141 1 53.74 ? C5' RVP 600 A 1 
HETATM 7 C C4' RVP . . . D 3 64.219 49.943 -4.238 1 53.74 ? C4' RVP 600 A 1 
HETATM 8 O O4' RVP . . . D 3 63.281 51.054 -4.356 1 53.74 ? O4' RVP 600 A 1 
HETATM 9 C C3' RVP . . . D 3 63.403 48.718 -4.556 1 53.74 ? C3' RVP 600 A 1 
HETATM 10 O O3' RVP . . . D 3 63.997 47.58 -3.927 1 53.73 ? O3' RVP 600 A 1 
HETATM 11 C C2' RVP . . . D 3 62.071 49.031 -3.921 1 53.74 ? C2' RVP 600 A 1 
HETATM 12 O O2' RVP . . . D 3 62.107 48.764 -2.52 1 53.75 ? O2' RVP 600 A 1 
HETATM 13 C C1' RVP . . . D 3 61.91 50.535 -4.12 1 53.73 ? C1' RVP 600 A 1 
HETATM 14 N N9 RVP . . . D 3 61.041 50.831 -5.308 1 53.74 ? N9 RVP 600 A 1 
HETATM 15 C C8 RVP . . . D 3 60.964 50.142 -6.474 1 53.75 ? C8 RVP 600 A 1 
HETATM 16 N N7 RVP . . . D 3 60.031 50.8 -7.227 1 53.75 ? N7 RVP 600 A 1 
HETATM 17 C C5 RVP . . . D 3 59.656 51.8 -6.433 1 53.75 ? C5 RVP 600 A 1 
HETATM 18 C C6 RVP . . . D 3 58.592 52.844 -6.819 1 53.75 ? C6 RVP 600 A 1 
HETATM 19 O O6 RVP . . . D 3 57.944 52.728 -7.864 1 53.75 ? O6 RVP 600 A 1 
HETATM 20 N N1 RVP . . . D 3 58.425 53.838 -5.936 1 53.75 ? N1 RVP 600 A 1 
HETATM 21 N N4 RVP . . . D 3 60.284 51.787 -5.291 1 53.75 ? N4 RVP 600 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#