data_1NF7 # _model_server_result.job_id FN6lOyrylJpwaVNgg189eQ _model_server_result.datetime_utc '2024-11-01 14:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 1NF7 # _exptl.entry_id 1NF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 645.45 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[5-(6-AMINO-PURIN-7-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHOXY]-HYDROXY-PHOSPHORYLMETHYL}-PHOSPHONIC ACID MONO-[2-(4-HYDROXY-6-METHOXY-7-METHYL-3-OXO-1,3-DIHYDRO-ISOBENZOFURAN-5-YL)-ETHYL] ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NF7 _cell.length_a 146.58 _cell.length_b 146.58 _cell.length_c 128.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,T 1 1,2,3,4 B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,U 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 146.58 146.58 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 146.58 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 146.58 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 328 A GLY 328 1_555 C K K . A K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc2 A O CYS 331 A CYS 331 1_555 C K K . A K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 B O GLY 328 B GLY 328 1_555 F K K . B K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc4 B O CYS 331 B CYS 331 1_555 F K K . B K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? # _chem_comp.formula 'C23 H29 N5 O13 P2' _chem_comp.formula_weight 645.45 _chem_comp.id MYD _chem_comp.mon_nstd_flag . _chem_comp.name '{[5-(6-AMINO-PURIN-7-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHOXY]-HYDROXY-PHOSPHORYLMETHYL}-PHOSPHONIC ACID MONO-[2-(4-HYDROXY-6-METHOXY-7-METHYL-3-OXO-1,3-DIHYDRO-ISOBENZOFURAN-5-YL)-ETHYL] ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'C2-MYCOPHENOLIC ADENINE DINUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C53 O51 MYD sing 237 n n C53 H531 MYD sing 238 n n C53 H532 MYD sing 239 n n C53 H533 MYD sing 240 n n O51 C46 MYD sing 241 n n C46 C47 MYD doub 242 n y C46 C39 MYD sing 243 n y C47 C52 MYD sing 244 n n C47 C48 MYD sing 245 n y C52 H521 MYD sing 246 n n C52 H522 MYD sing 247 n n C52 H523 MYD sing 248 n n C48 C49 MYD sing 249 n n C48 C41 MYD doub 250 n y C49 O50 MYD sing 251 n n C49 H491 MYD sing 252 n n C49 H492 MYD sing 253 n n O50 C42 MYD sing 254 n n C42 O43 MYD doub 255 n n C42 C41 MYD sing 256 n n C41 C40 MYD sing 257 n y C40 O31 MYD sing 258 n n C40 C39 MYD doub 259 n y O31 H31 MYD sing 260 n n C39 C38 MYD sing 261 n n C38 C37 MYD sing 262 n n C38 H381 MYD sing 263 n n C38 H382 MYD sing 264 n n C37 O36 MYD sing 265 n n C37 H371 MYD sing 266 n n C37 H372 MYD sing 267 n n O36 P35 MYD sing 268 n n P35 O45 MYD sing 269 n n P35 O30 MYD doub 270 n n P35 C34 MYD sing 271 n n O45 H45 MYD sing 272 n n C34 P33 MYD sing 273 n n C34 H341 MYD sing 274 n n C34 H342 MYD sing 275 n n P33 O44 MYD sing 276 n n P33 O29 MYD doub 277 n n P33 O32 MYD sing 278 n n O44 H44 MYD sing 279 n n O32 C28 MYD sing 280 n n C28 C27 MYD sing 281 n n C28 H281 MYD sing 282 n n C28 H282 MYD sing 283 n n C27 O24 MYD sing 284 n n C27 C26 MYD sing 285 n n C27 H27 MYD sing 286 n n O24 C23 MYD sing 287 n n C26 O25 MYD sing 288 n n C26 C22 MYD sing 289 n n C26 H26 MYD sing 290 n n O25 H25 MYD sing 291 n n C22 O21 MYD sing 292 n n C22 C23 MYD sing 293 n n C22 H22 MYD sing 294 n n O21 H21 MYD sing 295 n n C23 N20 MYD sing 296 n n C23 H23 MYD sing 297 n n N20 C16 MYD sing 298 n y N20 C19 MYD sing 299 n y C16 N15 MYD doub 300 n y C16 H16 MYD sing 301 n n N15 C14 MYD sing 302 n y C14 C19 MYD doub 303 n y C14 C13 MYD sing 304 n y C19 N18 MYD sing 305 n y N18 C17 MYD doub 306 n y C17 N12 MYD sing 307 n y C17 H17 MYD sing 308 n n N12 C13 MYD doub 309 n y C13 N11 MYD sing 310 n n N11 H111 MYD sing 311 n n N11 H112 MYD sing 312 n n # _atom_sites.entry_id 1NF7 _atom_sites.fract_transf_matrix[1][1] 0.006822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 902 902 K K . D 3 RVP A 1 600 600 RVP RMP . E 4 MYD A 1 701 701 MYD MAD . F 2 K B 1 901 901 K K . G 3 RVP B 1 601 601 RVP RMP . H 4 MYD B 1 702 702 MYD MAD . I 5 UNK B 1 801 801 UNK DUM . J 5 UNK B 1 802 802 UNK DUM . K 5 UNK B 1 803 803 UNK DUM . L 5 UNK B 1 804 804 UNK DUM . M 5 UNK B 1 805 805 UNK DUM . N 5 UNK B 1 806 806 UNK DUM . O 5 UNK B 1 807 807 UNK DUM . P 5 UNK B 1 808 808 UNK DUM . Q 5 UNK B 1 809 809 UNK DUM . R 5 UNK B 1 810 810 UNK DUM . S 5 UNK B 1 811 811 UNK DUM . T 6 HOH A 1 903 1 HOH HOH . T 6 HOH A 2 904 2 HOH HOH . T 6 HOH A 3 905 3 HOH HOH . T 6 HOH A 4 906 4 HOH HOH . T 6 HOH A 5 907 5 HOH HOH . T 6 HOH A 6 908 6 HOH HOH . T 6 HOH A 7 909 7 HOH HOH . T 6 HOH A 8 910 8 HOH HOH . T 6 HOH A 9 911 9 HOH HOH . T 6 HOH A 10 912 10 HOH HOH . T 6 HOH A 11 913 11 HOH HOH . T 6 HOH A 12 914 12 HOH HOH . T 6 HOH A 13 915 13 HOH HOH . T 6 HOH A 14 916 14 HOH HOH . T 6 HOH A 15 917 15 HOH HOH . T 6 HOH A 16 918 16 HOH HOH . T 6 HOH A 17 919 17 HOH HOH . T 6 HOH A 18 920 18 HOH HOH . T 6 HOH A 19 921 21 HOH HOH . T 6 HOH A 20 922 22 HOH HOH . T 6 HOH A 21 923 23 HOH HOH . T 6 HOH A 22 924 24 HOH HOH . T 6 HOH A 23 925 25 HOH HOH . T 6 HOH A 24 926 26 HOH HOH . T 6 HOH A 25 927 27 HOH HOH . T 6 HOH A 26 928 28 HOH HOH . T 6 HOH A 27 929 61 HOH HOH . T 6 HOH A 28 930 62 HOH HOH . T 6 HOH A 29 931 63 HOH HOH . T 6 HOH A 30 932 64 HOH HOH . T 6 HOH A 31 933 65 HOH HOH . T 6 HOH A 32 934 66 HOH HOH . T 6 HOH A 33 935 67 HOH HOH . T 6 HOH A 34 936 68 HOH HOH . T 6 HOH A 35 937 69 HOH HOH . T 6 HOH A 36 938 70 HOH HOH . T 6 HOH A 37 939 71 HOH HOH . T 6 HOH A 38 940 72 HOH HOH . T 6 HOH A 39 941 73 HOH HOH . T 6 HOH A 40 942 74 HOH HOH . T 6 HOH A 41 943 75 HOH HOH . T 6 HOH A 42 944 90 HOH HOH . T 6 HOH A 43 945 91 HOH HOH . T 6 HOH A 44 946 92 HOH HOH . T 6 HOH A 45 947 93 HOH HOH . T 6 HOH A 46 948 94 HOH HOH . U 6 HOH B 1 902 19 HOH HOH . U 6 HOH B 2 903 20 HOH HOH . U 6 HOH B 3 904 29 HOH HOH . U 6 HOH B 4 905 30 HOH HOH . U 6 HOH B 5 906 31 HOH HOH . U 6 HOH B 6 907 32 HOH HOH . U 6 HOH B 7 908 33 HOH HOH . U 6 HOH B 8 909 34 HOH HOH . U 6 HOH B 9 910 35 HOH HOH . U 6 HOH B 10 911 36 HOH HOH . U 6 HOH B 11 912 37 HOH HOH . U 6 HOH B 12 913 38 HOH HOH . U 6 HOH B 13 914 39 HOH HOH . U 6 HOH B 14 915 40 HOH HOH . U 6 HOH B 15 916 41 HOH HOH . U 6 HOH B 16 917 42 HOH HOH . U 6 HOH B 17 918 43 HOH HOH . U 6 HOH B 18 919 44 HOH HOH . U 6 HOH B 19 920 45 HOH HOH . U 6 HOH B 20 921 46 HOH HOH . U 6 HOH B 21 922 47 HOH HOH . U 6 HOH B 22 923 48 HOH HOH . U 6 HOH B 23 924 49 HOH HOH . U 6 HOH B 24 925 50 HOH HOH . U 6 HOH B 25 926 52 HOH HOH . U 6 HOH B 26 927 53 HOH HOH . U 6 HOH B 27 928 54 HOH HOH . U 6 HOH B 28 929 55 HOH HOH . U 6 HOH B 29 930 56 HOH HOH . U 6 HOH B 30 931 57 HOH HOH . U 6 HOH B 31 932 58 HOH HOH . U 6 HOH B 32 933 59 HOH HOH . U 6 HOH B 33 934 60 HOH HOH . U 6 HOH B 34 935 76 HOH HOH . U 6 HOH B 35 936 77 HOH HOH . U 6 HOH B 36 937 78 HOH HOH . U 6 HOH B 37 938 79 HOH HOH . U 6 HOH B 38 939 80 HOH HOH . U 6 HOH B 39 940 81 HOH HOH . U 6 HOH B 40 941 82 HOH HOH . U 6 HOH B 41 942 83 HOH HOH . U 6 HOH B 42 943 84 HOH HOH . U 6 HOH B 43 944 85 HOH HOH . U 6 HOH B 44 945 86 HOH HOH . U 6 HOH B 45 946 87 HOH HOH . U 6 HOH B 46 947 88 HOH HOH . U 6 HOH B 47 948 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C53 MYD . . . H 4 98.539 91.17 51.536 1 60.91 ? C53 MYD 702 B 1 HETATM 2 O O51 MYD . . . H 4 98.056 89.81 51.693 1 60.91 ? O51 MYD 702 B 1 HETATM 3 C C46 MYD . . . H 4 96.834 89.346 51.13 1 60.9 ? C46 MYD 702 B 1 HETATM 4 C C47 MYD . . . H 4 96.882 88.293 50.188 1 60.89 ? C47 MYD 702 B 1 HETATM 5 C C52 MYD . . . H 4 98.239 87.678 49.813 1 60.89 ? C52 MYD 702 B 1 HETATM 6 C C48 MYD . . . H 4 95.686 87.8 49.598 1 60.9 ? C48 MYD 702 B 1 HETATM 7 C C49 MYD . . . H 4 95.469 86.672 48.557 1 60.91 ? C49 MYD 702 B 1 HETATM 8 O O50 MYD . . . H 4 94.026 86.711 48.404 1 60.91 ? O50 MYD 702 B 1 HETATM 9 C C42 MYD . . . H 4 93.455 87.713 49.232 1 60.9 ? C42 MYD 702 B 1 HETATM 10 O O43 MYD . . . H 4 92.23 87.944 49.281 1 60.89 ? O43 MYD 702 B 1 HETATM 11 C C41 MYD . . . H 4 94.45 88.387 49.961 1 60.91 ? C41 MYD 702 B 1 HETATM 12 C C40 MYD . . . H 4 94.41 89.44 50.911 1 60.9 ? C40 MYD 702 B 1 HETATM 13 O O31 MYD . . . H 4 93.201 89.985 51.239 1 60.9 ? O31 MYD 702 B 1 HETATM 14 C C39 MYD . . . H 4 95.606 89.942 51.513 1 60.9 ? C39 MYD 702 B 1 HETATM 15 C C38 MYD . . . H 4 95.561 91.102 52.533 1 60.9 ? C38 MYD 702 B 1 HETATM 16 C C37 MYD . . . H 4 95.394 92.441 51.782 1 60.9 ? C37 MYD 702 B 1 HETATM 17 O O36 MYD . . . H 4 96.466 92.755 50.857 1 60.91 ? O36 MYD 702 B 1 HETATM 18 P P35 MYD . . . H 4 96.225 94.08 49.958 1 60.93 ? P35 MYD 702 B 1 HETATM 19 O O45 MYD . . . H 4 95.972 95.098 51.224 1 60.93 ? O45 MYD 702 B 1 HETATM 20 O O30 MYD . . . H 4 94.881 93.905 49.342 1 60.92 ? O30 MYD 702 B 1 HETATM 21 C C34 MYD . . . H 4 97.119 94.462 49.045 1 60.91 ? C34 MYD 702 B 1 HETATM 22 P P33 MYD . . . H 4 98.067 95.305 49.489 1 60.94 ? P33 MYD 702 B 1 HETATM 23 O O44 MYD . . . H 4 99.328 95.596 48.415 1 60.9 ? O44 MYD 702 B 1 HETATM 24 O O29 MYD . . . H 4 98.78 94.928 50.757 1 60.93 ? O29 MYD 702 B 1 HETATM 25 O O32 MYD . . . H 4 97.6 96.909 49.741 1 60.89 ? O32 MYD 702 B 1 HETATM 26 C C28 MYD . . . H 4 97.28 97.63 48.544 1 60.91 ? C28 MYD 702 B 1 HETATM 27 C C27 MYD . . . H 4 97.103 99.115 48.54 1 60.89 ? C27 MYD 702 B 1 HETATM 28 O O24 MYD . . . H 4 98.283 99.798 49.131 1 60.93 ? O24 MYD 702 B 1 HETATM 29 C C26 MYD . . . H 4 96.841 99.697 47.063 1 60.88 ? C26 MYD 702 B 1 HETATM 30 O O25 MYD . . . H 4 95.43 99.583 46.91 1 60.9 ? O25 MYD 702 B 1 HETATM 31 C C22 MYD . . . H 4 97.152 101.17 47.479 1 60.92 ? C22 MYD 702 B 1 HETATM 32 O O21 MYD . . . H 4 96.03 101.833 48.185 1 60.95 ? O21 MYD 702 B 1 HETATM 33 C C23 MYD . . . H 4 98.46 101.037 48.358 1 60.91 ? C23 MYD 702 B 1 HETATM 34 N N20 MYD . . . H 4 99.646 100.84 47.52 1 60.91 ? N20 MYD 702 B 1 HETATM 35 C C16 MYD . . . H 4 100.255 99.751 47.127 1 60.91 ? C16 MYD 702 B 1 HETATM 36 N N15 MYD . . . H 4 101.451 100.068 46.557 1 60.92 ? N15 MYD 702 B 1 HETATM 37 C C14 MYD . . . H 4 101.567 101.432 46.55 1 60.92 ? C14 MYD 702 B 1 HETATM 38 C C19 MYD . . . H 4 100.424 101.927 47.159 1 60.92 ? C19 MYD 702 B 1 HETATM 39 N N18 MYD . . . H 4 100.284 103.286 47.319 1 60.91 ? N18 MYD 702 B 1 HETATM 40 C C17 MYD . . . H 4 101.194 104.147 46.825 1 60.91 ? C17 MYD 702 B 1 HETATM 41 N N12 MYD . . . H 4 102.274 103.675 46.179 1 60.91 ? N12 MYD 702 B 1 HETATM 42 C C13 MYD . . . H 4 102.478 102.348 46.016 1 60.9 ? C13 MYD 702 B 1 HETATM 43 N N11 MYD . . . H 4 103.51 101.923 45.298 1 60.91 ? N11 MYD 702 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #