data_1NFB # _model_server_result.job_id TleDiqL-4TmfPOTXgDddUA _model_server_result.datetime_utc '2024-11-22 04:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":631}' # _entry.id 1NFB # _exptl.entry_id 1NFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.66 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-CHLOROPURINE RIBOSIDE,5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NFB _cell.length_a 145.19 _cell.length_b 145.19 _cell.length_c 127.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS tetrameric 4 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2,3,4 B,E,F,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 145.19 145.19 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 145.19 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 145.19 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 331 A CYS 331 1_555 C C6 CPR . A CPR 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? covale ? covale2 B SG CYS 331 B CYS 331 1_555 E C6 CPR . B CPR 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? # _chem_comp.formula 'C10 H13 Cl N4 O7 P 1' _chem_comp.formula_weight 367.66 _chem_comp.id CPR _chem_comp.mon_nstd_flag . _chem_comp.name "6-CHLOROPURINE RIBOSIDE, 5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CPR doub 70 n n P O2P CPR sing 71 n n P O3P CPR sing 72 n n P O5' CPR sing 73 n n O2P HOP2 CPR sing 74 n n O3P HOP3 CPR sing 75 n n O5' C5' CPR sing 76 n n C5' C4' CPR sing 77 n n C5' "H5'1" CPR sing 78 n n C5' "H5'2" CPR sing 79 n n C4' O4' CPR sing 80 n n C4' C3' CPR sing 81 n n C4' H4' CPR sing 82 n n O4' C1' CPR sing 83 n n C3' O3' CPR sing 84 n n C3' C2' CPR sing 85 n n C3' H3' CPR sing 86 n n O3' HO3' CPR sing 87 n n C2' O2' CPR sing 88 n n C2' C1' CPR sing 89 n n C2' H2' CPR sing 90 n n O2' HO2' CPR sing 91 n n C1' N9 CPR sing 92 n n C1' H1' CPR sing 93 n n N9 C8 CPR sing 94 n y N9 C4 CPR sing 95 n y C8 N7 CPR doub 96 n y C8 H8 CPR sing 97 n n N7 C5 CPR sing 98 n y C5 C6 CPR sing 99 n y C5 C4 CPR doub 100 n y C6 CL CPR sing 101 n n C6 N1 CPR doub 102 n y N1 C2 CPR sing 103 n y N1 HN1 CPR sing 104 n n C2 N3 CPR doub 105 n y C2 H2 CPR sing 106 n n N3 C4 CPR sing 107 n y # _atom_sites.entry_id 1NFB _atom_sites.fract_transf_matrix[1][1] 0.006888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPR A 1 631 631 CPR CPR . D 3 NAD A 1 701 701 NAD NAD . E 2 CPR B 1 631 631 CPR CPR . F 3 NAD B 1 702 702 NAD NAD . G 4 HOH A 1 702 7 HOH HOH . G 4 HOH A 2 703 8 HOH HOH . G 4 HOH A 3 704 23 HOH HOH . G 4 HOH A 4 705 24 HOH HOH . G 4 HOH A 5 706 25 HOH HOH . G 4 HOH A 6 707 26 HOH HOH . G 4 HOH A 7 708 27 HOH HOH . G 4 HOH A 8 709 28 HOH HOH . G 4 HOH A 9 710 29 HOH HOH . G 4 HOH A 10 711 30 HOH HOH . G 4 HOH A 11 712 31 HOH HOH . G 4 HOH A 12 713 32 HOH HOH . G 4 HOH A 13 714 34 HOH HOH . G 4 HOH A 14 715 35 HOH HOH . G 4 HOH A 15 716 36 HOH HOH . G 4 HOH A 16 717 37 HOH HOH . G 4 HOH A 17 718 38 HOH HOH . G 4 HOH A 18 719 39 HOH HOH . G 4 HOH A 19 720 40 HOH HOH . G 4 HOH A 20 721 41 HOH HOH . G 4 HOH A 21 722 42 HOH HOH . G 4 HOH A 22 723 43 HOH HOH . G 4 HOH A 23 724 44 HOH HOH . G 4 HOH A 24 725 53 HOH HOH . G 4 HOH A 25 726 54 HOH HOH . G 4 HOH A 26 727 55 HOH HOH . G 4 HOH A 27 728 56 HOH HOH . G 4 HOH A 28 729 57 HOH HOH . G 4 HOH A 29 730 58 HOH HOH . G 4 HOH A 30 731 59 HOH HOH . G 4 HOH A 31 732 60 HOH HOH . G 4 HOH A 32 733 61 HOH HOH . G 4 HOH A 33 734 62 HOH HOH . G 4 HOH A 34 735 63 HOH HOH . G 4 HOH A 35 736 64 HOH HOH . G 4 HOH A 36 737 65 HOH HOH . G 4 HOH A 37 738 66 HOH HOH . G 4 HOH A 38 739 67 HOH HOH . G 4 HOH A 39 740 68 HOH HOH . G 4 HOH A 40 741 69 HOH HOH . G 4 HOH A 41 742 70 HOH HOH . G 4 HOH A 42 743 71 HOH HOH . G 4 HOH A 43 744 120 HOH HOH . H 4 HOH B 1 703 1 HOH HOH . H 4 HOH B 2 704 2 HOH HOH . H 4 HOH B 3 705 3 HOH HOH . H 4 HOH B 4 706 4 HOH HOH . H 4 HOH B 5 707 5 HOH HOH . H 4 HOH B 6 708 6 HOH HOH . H 4 HOH B 7 709 9 HOH HOH . H 4 HOH B 8 710 10 HOH HOH . H 4 HOH B 9 711 11 HOH HOH . H 4 HOH B 10 712 12 HOH HOH . H 4 HOH B 11 713 13 HOH HOH . H 4 HOH B 12 714 14 HOH HOH . H 4 HOH B 13 715 15 HOH HOH . H 4 HOH B 14 716 16 HOH HOH . H 4 HOH B 15 717 17 HOH HOH . H 4 HOH B 16 718 18 HOH HOH . H 4 HOH B 17 719 19 HOH HOH . H 4 HOH B 18 720 20 HOH HOH . H 4 HOH B 19 721 21 HOH HOH . H 4 HOH B 20 722 22 HOH HOH . H 4 HOH B 21 723 45 HOH HOH . H 4 HOH B 22 724 46 HOH HOH . H 4 HOH B 23 725 47 HOH HOH . H 4 HOH B 24 726 48 HOH HOH . H 4 HOH B 25 727 49 HOH HOH . H 4 HOH B 26 728 50 HOH HOH . H 4 HOH B 27 729 51 HOH HOH . H 4 HOH B 28 730 72 HOH HOH . H 4 HOH B 29 731 73 HOH HOH . H 4 HOH B 30 732 74 HOH HOH . H 4 HOH B 31 733 75 HOH HOH . H 4 HOH B 32 734 76 HOH HOH . H 4 HOH B 33 735 77 HOH HOH . H 4 HOH B 34 736 78 HOH HOH . H 4 HOH B 35 737 79 HOH HOH . H 4 HOH B 36 738 80 HOH HOH . H 4 HOH B 37 739 81 HOH HOH . H 4 HOH B 38 740 82 HOH HOH . H 4 HOH B 39 741 83 HOH HOH . H 4 HOH B 40 742 85 HOH HOH . H 4 HOH B 41 743 86 HOH HOH . H 4 HOH B 42 744 115 HOH HOH . H 4 HOH B 43 745 167 HOH HOH . H 4 HOH B 44 746 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CPR . . . C 2 78.512 51.689 7.548 1 75.03 ? P CPR 631 A 1 HETATM 2 O O1P CPR . . . C 2 77.912 50.511 8.204 1 75.83 ? O1P CPR 631 A 1 HETATM 3 O O2P CPR . . . C 2 78.558 52.96 8.287 1 75.14 ? O2P CPR 631 A 1 HETATM 4 O O3P CPR . . . C 2 77.806 51.939 6.132 1 75.5 ? O3P CPR 631 A 1 HETATM 5 O O5' CPR . . . C 2 80.009 51.352 7.111 1 75.12 ? O5' CPR 631 A 1 HETATM 6 C C5' CPR . . . C 2 80.511 50.03 7.121 1 75.39 ? C5' CPR 631 A 1 HETATM 7 C C4' CPR . . . C 2 81.611 49.952 6.096 1 75 ? C4' CPR 631 A 1 HETATM 8 O O4' CPR . . . C 2 82.539 51.068 6.228 1 74.74 ? O4' CPR 631 A 1 HETATM 9 C C3' CPR . . . C 2 82.457 48.717 6.207 1 75.1 ? C3' CPR 631 A 1 HETATM 10 O O3' CPR . . . C 2 81.866 47.621 5.507 1 75.14 ? O3' CPR 631 A 1 HETATM 11 C C2' CPR . . . C 2 83.713 49.136 5.527 1 75.15 ? C2' CPR 631 A 1 HETATM 12 O O2' CPR . . . C 2 83.535 49.125 4.114 1 75.3 ? O2' CPR 631 A 1 HETATM 13 C C1' CPR . . . C 2 83.902 50.577 5.989 1 75.29 ? C1' CPR 631 A 1 HETATM 14 N N9 CPR . . . C 2 84.643 50.638 7.288 1 75.48 ? N9 CPR 631 A 1 HETATM 15 C C8 CPR . . . C 2 84.321 50.016 8.434 1 75.57 ? C8 CPR 631 A 1 HETATM 16 N N7 CPR . . . C 2 85.233 50.316 9.368 1 75.39 ? N7 CPR 631 A 1 HETATM 17 C C5 CPR . . . C 2 86.122 51.125 8.822 1 75.31 ? C5 CPR 631 A 1 HETATM 18 C C6 CPR . . . C 2 87.278 51.75 9.292 1 75.92 ? C6 CPR 631 A 1 HETATM 19 N N1 CPR . . . C 2 87.981 52.529 8.463 1 76.26 ? N1 CPR 631 A 1 HETATM 20 C C2 CPR . . . C 2 87.605 52.711 7.19 1 76.06 ? C2 CPR 631 A 1 HETATM 21 N N3 CPR . . . C 2 86.503 52.122 6.714 1 75.52 ? N3 CPR 631 A 1 HETATM 22 C C4 CPR . . . C 2 85.757 51.323 7.503 1 75.17 ? C4 CPR 631 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #