data_1NFB # _model_server_result.job_id WO4CivYdK-ipGk9jjJZ9lQ _model_server_result.datetime_utc '2024-11-22 05:30:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 1NFB # _exptl.entry_id 1NFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NFB _cell.length_a 145.19 _cell.length_b 145.19 _cell.length_c 127.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS tetrameric 4 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2,3,4 B,E,F,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 145.19 145.19 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 145.19 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 145.19 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 331 A CYS 331 1_555 C C6 CPR . A CPR 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? covale ? covale2 B SG CYS 331 B CYS 331 1_555 E C6 CPR . B CPR 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 275 n n PA O2A NAD sing 276 n n PA O5B NAD sing 277 n n PA O3 NAD sing 278 n n O2A HOA2 NAD sing 279 n n O5B C5B NAD sing 280 n n C5B C4B NAD sing 281 n n C5B H51A NAD sing 282 n n C5B H52A NAD sing 283 n n C4B O4B NAD sing 284 n n C4B C3B NAD sing 285 n n C4B H4B NAD sing 286 n n O4B C1B NAD sing 287 n n C3B O3B NAD sing 288 n n C3B C2B NAD sing 289 n n C3B H3B NAD sing 290 n n O3B HO3A NAD sing 291 n n C2B O2B NAD sing 292 n n C2B C1B NAD sing 293 n n C2B H2B NAD sing 294 n n O2B HO2A NAD sing 295 n n C1B N9A NAD sing 296 n n C1B H1B NAD sing 297 n n N9A C8A NAD sing 298 n y N9A C4A NAD sing 299 n y C8A N7A NAD doub 300 n y C8A H8A NAD sing 301 n n N7A C5A NAD sing 302 n y C5A C6A NAD sing 303 n y C5A C4A NAD doub 304 n y C6A N6A NAD sing 305 n n C6A N1A NAD doub 306 n y N6A H61A NAD sing 307 n n N6A H62A NAD sing 308 n n N1A C2A NAD sing 309 n y C2A N3A NAD doub 310 n y C2A H2A NAD sing 311 n n N3A C4A NAD sing 312 n y O3 PN NAD sing 313 n n PN O1N NAD doub 314 n n PN O2N NAD sing 315 n n PN O5D NAD sing 316 n n O5D C5D NAD sing 317 n n C5D C4D NAD sing 318 n n C5D H51N NAD sing 319 n n C5D H52N NAD sing 320 n n C4D O4D NAD sing 321 n n C4D C3D NAD sing 322 n n C4D H4D NAD sing 323 n n O4D C1D NAD sing 324 n n C3D O3D NAD sing 325 n n C3D C2D NAD sing 326 n n C3D H3D NAD sing 327 n n O3D HO3N NAD sing 328 n n C2D O2D NAD sing 329 n n C2D C1D NAD sing 330 n n C2D H2D NAD sing 331 n n O2D HO2N NAD sing 332 n n C1D N1N NAD sing 333 n n C1D H1D NAD sing 334 n n N1N C2N NAD sing 335 n y N1N C6N NAD doub 336 n y C2N C3N NAD doub 337 n y C2N H2N NAD sing 338 n n C3N C7N NAD sing 339 n n C3N C4N NAD sing 340 n y C7N O7N NAD doub 341 n n C7N N7N NAD sing 342 n n N7N H71N NAD sing 343 n n N7N H72N NAD sing 344 n n C4N C5N NAD doub 345 n y C4N H4N NAD sing 346 n n C5N C6N NAD sing 347 n y C5N H5N NAD sing 348 n n C6N H6N NAD sing 349 n n # _atom_sites.entry_id 1NFB _atom_sites.fract_transf_matrix[1][1] 0.006888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPR A 1 631 631 CPR CPR . D 3 NAD A 1 701 701 NAD NAD . E 2 CPR B 1 631 631 CPR CPR . F 3 NAD B 1 702 702 NAD NAD . G 4 HOH A 1 702 7 HOH HOH . G 4 HOH A 2 703 8 HOH HOH . G 4 HOH A 3 704 23 HOH HOH . G 4 HOH A 4 705 24 HOH HOH . G 4 HOH A 5 706 25 HOH HOH . G 4 HOH A 6 707 26 HOH HOH . G 4 HOH A 7 708 27 HOH HOH . G 4 HOH A 8 709 28 HOH HOH . G 4 HOH A 9 710 29 HOH HOH . G 4 HOH A 10 711 30 HOH HOH . G 4 HOH A 11 712 31 HOH HOH . G 4 HOH A 12 713 32 HOH HOH . G 4 HOH A 13 714 34 HOH HOH . G 4 HOH A 14 715 35 HOH HOH . G 4 HOH A 15 716 36 HOH HOH . G 4 HOH A 16 717 37 HOH HOH . G 4 HOH A 17 718 38 HOH HOH . G 4 HOH A 18 719 39 HOH HOH . G 4 HOH A 19 720 40 HOH HOH . G 4 HOH A 20 721 41 HOH HOH . G 4 HOH A 21 722 42 HOH HOH . G 4 HOH A 22 723 43 HOH HOH . G 4 HOH A 23 724 44 HOH HOH . G 4 HOH A 24 725 53 HOH HOH . G 4 HOH A 25 726 54 HOH HOH . G 4 HOH A 26 727 55 HOH HOH . G 4 HOH A 27 728 56 HOH HOH . G 4 HOH A 28 729 57 HOH HOH . G 4 HOH A 29 730 58 HOH HOH . G 4 HOH A 30 731 59 HOH HOH . G 4 HOH A 31 732 60 HOH HOH . G 4 HOH A 32 733 61 HOH HOH . G 4 HOH A 33 734 62 HOH HOH . G 4 HOH A 34 735 63 HOH HOH . G 4 HOH A 35 736 64 HOH HOH . G 4 HOH A 36 737 65 HOH HOH . G 4 HOH A 37 738 66 HOH HOH . G 4 HOH A 38 739 67 HOH HOH . G 4 HOH A 39 740 68 HOH HOH . G 4 HOH A 40 741 69 HOH HOH . G 4 HOH A 41 742 70 HOH HOH . G 4 HOH A 42 743 71 HOH HOH . G 4 HOH A 43 744 120 HOH HOH . H 4 HOH B 1 703 1 HOH HOH . H 4 HOH B 2 704 2 HOH HOH . H 4 HOH B 3 705 3 HOH HOH . H 4 HOH B 4 706 4 HOH HOH . H 4 HOH B 5 707 5 HOH HOH . H 4 HOH B 6 708 6 HOH HOH . H 4 HOH B 7 709 9 HOH HOH . H 4 HOH B 8 710 10 HOH HOH . H 4 HOH B 9 711 11 HOH HOH . H 4 HOH B 10 712 12 HOH HOH . H 4 HOH B 11 713 13 HOH HOH . H 4 HOH B 12 714 14 HOH HOH . H 4 HOH B 13 715 15 HOH HOH . H 4 HOH B 14 716 16 HOH HOH . H 4 HOH B 15 717 17 HOH HOH . H 4 HOH B 16 718 18 HOH HOH . H 4 HOH B 17 719 19 HOH HOH . H 4 HOH B 18 720 20 HOH HOH . H 4 HOH B 19 721 21 HOH HOH . H 4 HOH B 20 722 22 HOH HOH . H 4 HOH B 21 723 45 HOH HOH . H 4 HOH B 22 724 46 HOH HOH . H 4 HOH B 23 725 47 HOH HOH . H 4 HOH B 24 726 48 HOH HOH . H 4 HOH B 25 727 49 HOH HOH . H 4 HOH B 26 728 50 HOH HOH . H 4 HOH B 27 729 51 HOH HOH . H 4 HOH B 28 730 72 HOH HOH . H 4 HOH B 29 731 73 HOH HOH . H 4 HOH B 30 732 74 HOH HOH . H 4 HOH B 31 733 75 HOH HOH . H 4 HOH B 32 734 76 HOH HOH . H 4 HOH B 33 735 77 HOH HOH . H 4 HOH B 34 736 78 HOH HOH . H 4 HOH B 35 737 79 HOH HOH . H 4 HOH B 36 738 80 HOH HOH . H 4 HOH B 37 739 81 HOH HOH . H 4 HOH B 38 740 82 HOH HOH . H 4 HOH B 39 741 83 HOH HOH . H 4 HOH B 40 742 85 HOH HOH . H 4 HOH B 41 743 86 HOH HOH . H 4 HOH B 42 744 115 HOH HOH . H 4 HOH B 43 745 167 HOH HOH . H 4 HOH B 44 746 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 48.028 95.431 -47.425 1 138.92 ? PA NAD 702 B 1 HETATM 2 O O1A NAD . . . F 3 48.077 94.642 -46.171 1 138.89 ? O1A NAD 702 B 1 HETATM 3 O O2A NAD . . . F 3 46.839 95.284 -48.29 1 138.86 ? O2A NAD 702 B 1 HETATM 4 O O5B NAD . . . F 3 48.222 97.007 -47.101 1 138.9 ? O5B NAD 702 B 1 HETATM 5 C C5B NAD . . . F 3 49.514 97.632 -47.242 1 138.87 ? C5B NAD 702 B 1 HETATM 6 C C4B NAD . . . F 3 49.669 98.816 -46.292 1 138.86 ? C4B NAD 702 B 1 HETATM 7 O O4B NAD . . . F 3 48.84 99.992 -46.611 1 138.82 ? O4B NAD 702 B 1 HETATM 8 C C3B NAD . . . F 3 49.317 98.406 -44.87 1 138.91 ? C3B NAD 702 B 1 HETATM 9 O O3B NAD . . . F 3 50.482 97.785 -44.257 1 138.86 ? O3B NAD 702 B 1 HETATM 10 C C2B NAD . . . F 3 48.971 99.722 -44.215 1 138.93 ? C2B NAD 702 B 1 HETATM 11 O O2B NAD . . . F 3 50.159 100.359 -43.77 1 138.95 ? O2B NAD 702 B 1 HETATM 12 C C1B NAD . . . F 3 48.359 100.578 -45.341 1 138.85 ? C1B NAD 702 B 1 HETATM 13 N N9A NAD . . . F 3 46.875 100.529 -45.377 1 138.84 ? N9A NAD 702 B 1 HETATM 14 C C8A NAD . . . F 3 46.102 99.456 -45.612 1 138.87 ? C8A NAD 702 B 1 HETATM 15 N N7A NAD . . . F 3 44.816 99.82 -45.579 1 138.88 ? N7A NAD 702 B 1 HETATM 16 C C5A NAD . . . F 3 44.775 101.123 -45.323 1 138.87 ? C5A NAD 702 B 1 HETATM 17 C C6A NAD . . . F 3 43.748 102.074 -45.167 1 138.85 ? C6A NAD 702 B 1 HETATM 18 N N6A NAD . . . F 3 42.478 101.719 -45.275 1 138.87 ? N6A NAD 702 B 1 HETATM 19 N N1A NAD . . . F 3 44.065 103.376 -44.902 1 138.85 ? N1A NAD 702 B 1 HETATM 20 C C2A NAD . . . F 3 45.344 103.779 -44.784 1 138.85 ? C2A NAD 702 B 1 HETATM 21 N N3A NAD . . . F 3 46.339 102.884 -44.929 1 138.83 ? N3A NAD 702 B 1 HETATM 22 C C4A NAD . . . F 3 46.083 101.57 -45.195 1 138.85 ? C4A NAD 702 B 1 HETATM 23 O O3 NAD . . . F 3 49.346 95.091 -48.324 1 138.92 ? O3 NAD 702 B 1 HETATM 24 P PN NAD . . . F 3 50.551 94.113 -47.808 1 138.9 ? PN NAD 702 B 1 HETATM 25 O O1N NAD . . . F 3 50.057 92.711 -47.789 1 138.87 ? O1N NAD 702 B 1 HETATM 26 O O2N NAD . . . F 3 51.142 94.657 -46.561 1 138.88 ? O2N NAD 702 B 1 HETATM 27 O O5D NAD . . . F 3 51.659 94.248 -49.029 1 138.88 ? O5D NAD 702 B 1 HETATM 28 C C5D NAD . . . F 3 51.31 94.583 -50.43 1 138.87 ? C5D NAD 702 B 1 HETATM 29 C C4D NAD . . . F 3 50.406 93.513 -51.104 1 138.87 ? C4D NAD 702 B 1 HETATM 30 O O4D NAD . . . F 3 50.951 92.166 -50.962 1 138.88 ? O4D NAD 702 B 1 HETATM 31 C C3D NAD . . . F 3 49.005 93.463 -50.516 1 138.88 ? C3D NAD 702 B 1 HETATM 32 O O3D NAD . . . F 3 48.132 94.373 -51.195 1 138.86 ? O3D NAD 702 B 1 HETATM 33 C C2D NAD . . . F 3 48.548 92.034 -50.694 1 138.87 ? C2D NAD 702 B 1 HETATM 34 O O2D NAD . . . F 3 47.639 91.913 -51.793 1 138.87 ? O2D NAD 702 B 1 HETATM 35 C C1D NAD . . . F 3 49.844 91.2 -50.947 1 138.89 ? C1D NAD 702 B 1 HETATM 36 N N1N NAD . . . F 3 50.081 90.084 -49.942 1 138.89 ? N1N NAD 702 B 1 HETATM 37 C C2N NAD . . . F 3 48.992 89.252 -49.619 1 138.88 ? C2N NAD 702 B 1 HETATM 38 C C3N NAD . . . F 3 49.126 88.205 -48.711 1 138.85 ? C3N NAD 702 B 1 HETATM 39 C C7N NAD . . . F 3 47.883 87.361 -48.444 1 138.86 ? C7N NAD 702 B 1 HETATM 40 O O7N NAD . . . F 3 47.763 86.695 -47.442 1 138.87 ? O7N NAD 702 B 1 HETATM 41 N N7N NAD . . . F 3 46.977 87.347 -49.404 1 138.87 ? N7N NAD 702 B 1 HETATM 42 C C4N NAD . . . F 3 50.386 87.963 -48.085 1 138.84 ? C4N NAD 702 B 1 HETATM 43 C C5N NAD . . . F 3 51.517 88.777 -48.384 1 138.85 ? C5N NAD 702 B 1 HETATM 44 C C6N NAD . . . F 3 51.376 89.848 -49.318 1 138.87 ? C6N NAD 702 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #