data_1NFP # _model_server_result.job_id uL8Qap5hZHueunASfQ0uwg _model_server_result.datetime_utc '2025-03-06 05:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1nfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":230}' # _entry.id 1NFP # _exptl.entry_id 1NFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1NFP _cell.length_a 56.93 _cell.length_b 92.23 _cell.length_c 99.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 49.615 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C6 FMN . A FMN 229 1_555 D C3 MYR . A MYR 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale2 E C6 FMN . A FMN 230 1_555 F C3 MYR . A MYR 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1NFP _atom_sites.fract_transf_matrix[1][1] 0.017565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 423 423 SO4 SO4 . C 3 FMN A 1 229 229 FMN FMN . D 4 MYR A 1 424 229 MYR MYR . E 3 FMN A 1 230 230 FMN FMN . F 4 MYR A 1 425 230 MYR MYR . G 5 HOH A 1 231 231 HOH HOH . G 5 HOH A 2 232 232 HOH HOH . G 5 HOH A 3 233 233 HOH HOH . G 5 HOH A 4 234 234 HOH HOH . G 5 HOH A 5 235 235 HOH HOH . G 5 HOH A 6 236 236 HOH HOH . G 5 HOH A 7 237 237 HOH HOH . G 5 HOH A 8 238 238 HOH HOH . G 5 HOH A 9 239 239 HOH HOH . G 5 HOH A 10 240 240 HOH HOH . G 5 HOH A 11 241 241 HOH HOH . G 5 HOH A 12 242 242 HOH HOH . G 5 HOH A 13 243 243 HOH HOH . G 5 HOH A 14 244 244 HOH HOH . G 5 HOH A 15 245 245 HOH HOH . G 5 HOH A 16 246 246 HOH HOH . G 5 HOH A 17 247 247 HOH HOH . G 5 HOH A 18 248 248 HOH HOH . G 5 HOH A 19 249 249 HOH HOH . G 5 HOH A 20 250 250 HOH HOH . G 5 HOH A 21 251 251 HOH HOH . G 5 HOH A 22 252 252 HOH HOH . G 5 HOH A 23 253 253 HOH HOH . G 5 HOH A 24 254 254 HOH HOH . G 5 HOH A 25 255 255 HOH HOH . G 5 HOH A 26 256 256 HOH HOH . G 5 HOH A 27 257 257 HOH HOH . G 5 HOH A 28 258 258 HOH HOH . G 5 HOH A 29 259 259 HOH HOH . G 5 HOH A 30 260 260 HOH HOH . G 5 HOH A 31 261 261 HOH HOH . G 5 HOH A 32 262 262 HOH HOH . G 5 HOH A 33 263 263 HOH HOH . G 5 HOH A 34 264 264 HOH HOH . G 5 HOH A 35 265 265 HOH HOH . G 5 HOH A 36 266 266 HOH HOH . G 5 HOH A 37 267 267 HOH HOH . G 5 HOH A 38 268 268 HOH HOH . G 5 HOH A 39 269 269 HOH HOH . G 5 HOH A 40 270 270 HOH HOH . G 5 HOH A 41 271 271 HOH HOH . G 5 HOH A 42 272 272 HOH HOH . G 5 HOH A 43 273 273 HOH HOH . G 5 HOH A 44 274 274 HOH HOH . G 5 HOH A 45 275 275 HOH HOH . G 5 HOH A 46 276 276 HOH HOH . G 5 HOH A 47 277 277 HOH HOH . G 5 HOH A 48 278 278 HOH HOH . G 5 HOH A 49 279 279 HOH HOH . G 5 HOH A 50 280 280 HOH HOH . G 5 HOH A 51 281 281 HOH HOH . G 5 HOH A 52 282 282 HOH HOH . G 5 HOH A 53 283 283 HOH HOH . G 5 HOH A 54 284 284 HOH HOH . G 5 HOH A 55 285 285 HOH HOH . G 5 HOH A 56 286 286 HOH HOH . G 5 HOH A 57 287 287 HOH HOH . G 5 HOH A 58 288 288 HOH HOH . G 5 HOH A 59 289 289 HOH HOH . G 5 HOH A 60 290 290 HOH HOH . G 5 HOH A 61 291 291 HOH HOH . G 5 HOH A 62 292 292 HOH HOH . G 5 HOH A 63 293 293 HOH HOH . G 5 HOH A 64 294 294 HOH HOH . G 5 HOH A 65 295 295 HOH HOH . G 5 HOH A 66 296 296 HOH HOH . G 5 HOH A 67 297 297 HOH HOH . G 5 HOH A 68 298 298 HOH HOH . G 5 HOH A 69 299 299 HOH HOH . G 5 HOH A 70 300 300 HOH HOH . G 5 HOH A 71 301 301 HOH HOH . G 5 HOH A 72 302 302 HOH HOH . G 5 HOH A 73 303 303 HOH HOH . G 5 HOH A 74 304 304 HOH HOH . G 5 HOH A 75 305 305 HOH HOH . G 5 HOH A 76 306 306 HOH HOH . G 5 HOH A 77 307 307 HOH HOH . G 5 HOH A 78 308 308 HOH HOH . G 5 HOH A 79 309 309 HOH HOH . G 5 HOH A 80 310 310 HOH HOH . G 5 HOH A 81 311 311 HOH HOH . G 5 HOH A 82 312 312 HOH HOH . G 5 HOH A 83 313 313 HOH HOH . G 5 HOH A 84 314 314 HOH HOH . G 5 HOH A 85 315 315 HOH HOH . G 5 HOH A 86 316 316 HOH HOH . G 5 HOH A 87 317 317 HOH HOH . G 5 HOH A 88 318 318 HOH HOH . G 5 HOH A 89 319 319 HOH HOH . G 5 HOH A 90 320 320 HOH HOH . G 5 HOH A 91 321 321 HOH HOH . G 5 HOH A 92 322 322 HOH HOH . G 5 HOH A 93 323 323 HOH HOH . G 5 HOH A 94 324 324 HOH HOH . G 5 HOH A 95 325 325 HOH HOH . G 5 HOH A 96 326 326 HOH HOH . G 5 HOH A 97 327 327 HOH HOH . G 5 HOH A 98 328 328 HOH HOH . G 5 HOH A 99 329 329 HOH HOH . G 5 HOH A 100 330 330 HOH HOH . G 5 HOH A 101 331 331 HOH HOH . G 5 HOH A 102 332 332 HOH HOH . G 5 HOH A 103 333 333 HOH HOH . G 5 HOH A 104 334 334 HOH HOH . G 5 HOH A 105 335 335 HOH HOH . G 5 HOH A 106 336 336 HOH HOH . G 5 HOH A 107 337 337 HOH HOH . G 5 HOH A 108 338 338 HOH HOH . G 5 HOH A 109 339 339 HOH HOH . G 5 HOH A 110 340 340 HOH HOH . G 5 HOH A 111 341 341 HOH HOH . G 5 HOH A 112 342 342 HOH HOH . G 5 HOH A 113 343 343 HOH HOH . G 5 HOH A 114 344 344 HOH HOH . G 5 HOH A 115 345 345 HOH HOH . G 5 HOH A 116 346 346 HOH HOH . G 5 HOH A 117 347 347 HOH HOH . G 5 HOH A 118 348 348 HOH HOH . G 5 HOH A 119 349 349 HOH HOH . G 5 HOH A 120 350 350 HOH HOH . G 5 HOH A 121 351 351 HOH HOH . G 5 HOH A 122 352 352 HOH HOH . G 5 HOH A 123 353 353 HOH HOH . G 5 HOH A 124 354 354 HOH HOH . G 5 HOH A 125 355 355 HOH HOH . G 5 HOH A 126 356 356 HOH HOH . G 5 HOH A 127 357 357 HOH HOH . G 5 HOH A 128 358 358 HOH HOH . G 5 HOH A 129 359 359 HOH HOH . G 5 HOH A 130 360 360 HOH HOH . G 5 HOH A 131 361 361 HOH HOH . G 5 HOH A 132 362 362 HOH HOH . G 5 HOH A 133 363 363 HOH HOH . G 5 HOH A 134 364 364 HOH HOH . G 5 HOH A 135 365 365 HOH HOH . G 5 HOH A 136 366 366 HOH HOH . G 5 HOH A 137 367 367 HOH HOH . G 5 HOH A 138 368 368 HOH HOH . G 5 HOH A 139 369 369 HOH HOH . G 5 HOH A 140 370 370 HOH HOH . G 5 HOH A 141 371 371 HOH HOH . G 5 HOH A 142 372 372 HOH HOH . G 5 HOH A 143 373 373 HOH HOH . G 5 HOH A 144 374 374 HOH HOH . G 5 HOH A 145 375 375 HOH HOH . G 5 HOH A 146 376 376 HOH HOH . G 5 HOH A 147 377 377 HOH HOH . G 5 HOH A 148 378 378 HOH HOH . G 5 HOH A 149 379 379 HOH HOH . G 5 HOH A 150 380 380 HOH HOH . G 5 HOH A 151 381 381 HOH HOH . G 5 HOH A 152 382 382 HOH HOH . G 5 HOH A 153 383 383 HOH HOH . G 5 HOH A 154 384 384 HOH HOH . G 5 HOH A 155 385 385 HOH HOH . G 5 HOH A 156 386 386 HOH HOH . G 5 HOH A 157 387 387 HOH HOH . G 5 HOH A 158 388 388 HOH HOH . G 5 HOH A 159 389 389 HOH HOH . G 5 HOH A 160 390 390 HOH HOH . G 5 HOH A 161 391 391 HOH HOH . G 5 HOH A 162 392 392 HOH HOH . G 5 HOH A 163 393 393 HOH HOH . G 5 HOH A 164 394 394 HOH HOH . G 5 HOH A 165 395 395 HOH HOH . G 5 HOH A 166 396 396 HOH HOH . G 5 HOH A 167 397 397 HOH HOH . G 5 HOH A 168 398 398 HOH HOH . G 5 HOH A 169 399 399 HOH HOH . G 5 HOH A 170 400 400 HOH HOH . G 5 HOH A 171 401 401 HOH HOH . G 5 HOH A 172 402 402 HOH HOH . G 5 HOH A 173 403 403 HOH HOH . G 5 HOH A 174 404 404 HOH HOH . G 5 HOH A 175 405 405 HOH HOH . G 5 HOH A 176 406 406 HOH HOH . G 5 HOH A 177 407 407 HOH HOH . G 5 HOH A 178 408 408 HOH HOH . G 5 HOH A 179 409 409 HOH HOH . G 5 HOH A 180 410 410 HOH HOH . G 5 HOH A 181 411 411 HOH HOH . G 5 HOH A 182 412 412 HOH HOH . G 5 HOH A 183 413 413 HOH HOH . G 5 HOH A 184 414 414 HOH HOH . G 5 HOH A 185 415 415 HOH HOH . G 5 HOH A 186 416 416 HOH HOH . G 5 HOH A 187 417 417 HOH HOH . G 5 HOH A 188 418 418 HOH HOH . G 5 HOH A 189 419 419 HOH HOH . G 5 HOH A 190 420 420 HOH HOH . G 5 HOH A 191 421 421 HOH HOH . G 5 HOH A 192 422 422 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 3 20.07 35.853 34.624 1 16.07 ? N1 FMN 230 A 1 HETATM 2 C C2 FMN . . . E 3 19.326 36.158 33.59 1 15.99 ? C2 FMN 230 A 1 HETATM 3 O O2 FMN . . . E 3 19.779 36.414 32.515 1 15.94 ? O2 FMN 230 A 1 HETATM 4 N N3 FMN . . . E 3 17.914 36.214 33.657 1 14.83 ? N3 FMN 230 A 1 HETATM 5 C C4 FMN . . . E 3 17.24 35.919 34.805 1 17.76 ? C4 FMN 230 A 1 HETATM 6 O O4 FMN . . . E 3 16.026 35.947 34.798 1 15.47 ? O4 FMN 230 A 1 HETATM 7 C C4A FMN . . . E 3 18.033 35.54 35.946 1 16.48 ? C4A FMN 230 A 1 HETATM 8 N N5 FMN . . . E 3 17.485 35.289 37.126 1 16.97 ? N5 FMN 230 A 1 HETATM 9 C C5A FMN . . . E 3 18.25 34.994 38.233 1 20.21 ? C5A FMN 230 A 1 HETATM 10 C C6 FMN . . . E 3 17.643 34.713 39.454 1 21.66 ? C6 FMN 230 A 1 HETATM 11 C C7 FMN . . . E 3 18.386 34.322 40.531 1 22.96 ? C7 FMN 230 A 1 HETATM 12 C C7M FMN . . . E 3 17.77 33.957 41.877 1 22.93 ? C7M FMN 230 A 1 HETATM 13 C C8 FMN . . . E 3 19.801 34.218 40.429 1 21.03 ? C8 FMN 230 A 1 HETATM 14 C C8M FMN . . . E 3 20.646 33.787 41.604 1 21.43 ? C8M FMN 230 A 1 HETATM 15 C C9 FMN . . . E 3 20.413 34.529 39.222 1 20.55 ? C9 FMN 230 A 1 HETATM 16 C C9A FMN . . . E 3 19.672 34.911 38.138 1 19.57 ? C9A FMN 230 A 1 HETATM 17 N N10 FMN . . . E 3 20.219 35.224 36.888 1 19.02 ? N10 FMN 230 A 1 HETATM 18 C C10 FMN . . . E 3 19.492 35.485 35.792 1 18.16 ? C10 FMN 230 A 1 HETATM 19 C C1' FMN . . . E 3 21.713 35.357 36.805 1 22.07 ? C1' FMN 230 A 1 HETATM 20 C C2' FMN . . . E 3 22.246 34.022 36.209 1 26.7 ? C2' FMN 230 A 1 HETATM 21 O O2' FMN . . . E 3 22.474 33.135 37.306 1 26.38 ? O2' FMN 230 A 1 HETATM 22 C C3' FMN . . . E 3 23.543 34.267 35.476 1 31.47 ? C3' FMN 230 A 1 HETATM 23 O O3' FMN . . . E 3 24.434 34.901 36.398 1 32.17 ? O3' FMN 230 A 1 HETATM 24 C C4' FMN . . . E 3 23.358 35.2 34.288 1 35.56 ? C4' FMN 230 A 1 HETATM 25 O O4' FMN . . . E 3 22.373 34.74 33.335 1 31.85 ? O4' FMN 230 A 1 HETATM 26 C C5' FMN . . . E 3 24.726 35.298 33.58 1 42.44 ? C5' FMN 230 A 1 HETATM 27 O O5' FMN . . . E 3 24.58 36.455 32.475 1 52.66 ? O5' FMN 230 A 1 HETATM 28 P P FMN . . . E 3 25.815 37.124 31.893 1 59.17 ? P FMN 230 A 1 HETATM 29 O O1P FMN . . . E 3 25.178 38.128 30.886 1 59.09 ? O1P FMN 230 A 1 HETATM 30 O O2P FMN . . . E 3 26.667 37.718 32.818 1 59.78 ? O2P FMN 230 A 1 HETATM 31 O O3P FMN . . . E 3 26.628 36.065 31.271 1 59.49 ? O3P FMN 230 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #